Wall clock time and date at job start Tue Mar 31 2020 05:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38376 * 119.92177 * 2 1 4 4 C 1.38378 * 120.31088 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.92258 * 179.97438 * 4 3 2 6 6 C 1.37928 * 120.15133 * 359.97438 * 4 3 2 7 7 C 1.39666 * 119.84528 * 359.97438 * 6 4 3 8 8 C 1.47664 * 120.15135 * 180.02562 * 7 6 4 9 9 N 1.30430 * 124.20111 * 180.02562 * 8 7 6 10 10 C 1.36427 * 109.09748 * 180.02562 * 9 8 7 11 11 C 1.37745 * 127.29026 * 179.97438 * 10 9 8 12 12 C 1.46678 * 120.00264 * 354.87891 * 11 10 9 13 13 C 1.40161 * 120.15802 * 5.80154 * 12 11 10 14 14 C 1.37864 * 119.94016 * 180.02562 * 13 12 11 15 15 C 1.38337 * 120.27004 * 0.02653 * 14 13 12 16 16 C 1.39061 * 120.32762 * 359.97360 * 15 14 13 17 17 O 1.35758 * 119.97402 * 180.02562 * 16 15 14 18 18 C 1.34829 * 117.00266 * 174.31058 * 17 16 15 19 19 H 1.08000 * 119.99839 * 5.04736 * 18 17 16 20 20 C 1.38656 * 120.00193 * 185.04484 * 18 17 16 21 21 N 1.31558 * 119.99725 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99956 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47268 * 59.99878 * 22 20 18 24 24 H 1.48496 * 109.47218 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47343 * 300.00007 * 22 20 18 26 26 C 1.38504 * 120.05094 * 0.27357 * 16 15 14 27 27 C 1.47587 * 105.41895 * 0.23716 * 10 9 8 28 28 O 1.21646 * 127.40061 * 179.76264 * 27 10 9 29 29 O 1.34688 * 124.20681 * 0.02562 * 8 7 6 30 30 C 1.37930 * 119.92492 * 180.27623 * 2 1 3 31 31 H 1.09004 * 109.47015 * 90.00143 * 1 2 3 32 32 H 1.09001 * 109.47215 * 210.00049 * 1 2 3 33 33 H 1.09002 * 109.46972 * 330.00372 * 1 2 3 34 34 H 1.08010 * 119.84559 * 0.02562 * 3 2 1 35 35 H 1.09004 * 109.47173 * 270.02160 * 5 4 3 36 36 H 1.08994 * 109.47201 * 30.02699 * 5 4 3 37 37 H 1.09001 * 109.46977 * 150.02510 * 5 4 3 38 38 H 1.08000 * 120.08057 * 180.02562 * 6 4 3 39 39 H 1.08004 * 119.99706 * 174.88274 * 11 10 9 40 40 H 1.08001 * 120.03345 * 0.04304 * 13 12 11 41 41 H 1.07995 * 119.86700 * 179.97438 * 14 13 12 42 42 H 1.08000 * 119.84025 * 179.97438 * 15 14 13 43 43 H 0.97000 * 119.99268 * 179.97438 * 21 20 18 44 44 H 1.08000 * 120.12785 * 179.70535 * 26 16 15 45 45 H 1.08004 * 120.07708 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1993 0.0000 4 6 3.5810 1.2087 -0.0005 5 6 4.3239 2.5199 -0.0011 6 6 4.2819 0.0208 -0.0005 7 6 3.5917 -1.1934 0.0005 8 6 4.3353 -2.4692 0.0011 9 7 3.7724 -3.6458 0.0016 10 6 4.7428 -4.6048 0.0027 11 6 4.5661 -5.9709 0.0039 12 6 3.2172 -6.5358 0.1177 13 6 2.0973 -5.6931 0.1031 14 6 0.8316 -6.2289 0.2108 15 6 0.6614 -7.5962 0.3342 16 6 1.7646 -8.4426 0.3500 17 8 1.5892 -9.7834 0.4708 18 6 2.6881 -10.5569 0.3611 19 1 3.6624 -10.1005 0.2667 20 6 2.5673 -11.9381 0.3696 21 7 1.3805 -12.4939 0.4852 22 14 4.0899 -13.0097 0.2183 23 1 5.0110 -12.7232 1.3473 24 1 3.6937 -14.4404 0.2529 25 1 4.7753 -12.7174 -1.0662 26 6 3.0425 -7.9183 0.2478 27 6 6.0220 -3.8687 0.0086 28 8 7.1443 -4.3377 0.0152 29 8 5.6789 -2.5625 0.0012 30 6 2.1951 -1.1954 -0.0058 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.6534 2.1325 0.0004 35 1 4.5023 2.8360 -1.0289 36 1 3.7291 3.2747 0.5132 37 1 5.2777 2.3973 0.5120 38 1 5.3619 0.0295 -0.0005 39 1 5.4207 -6.6260 -0.0788 40 1 2.2257 -4.6251 0.0071 41 1 -0.0304 -5.5785 0.1998 42 1 -0.3333 -8.0084 0.4185 43 1 1.2961 -13.4602 0.4907 44 1 3.9004 -8.5741 0.2647 45 1 1.6551 -2.1307 -0.0099 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096130176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:48 Heat of formation + Delta-G solvation = -7.367062 kcal Electronic energy + Delta-G solvation = -30184.413595 eV Core-core repulsion = 25905.748237 eV Total energy + Delta-G solvation = -4278.665358 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.130 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.12452 -40.83106 -40.48603 -39.33682 -38.56907 -36.61033 -34.54979 -34.40475 -34.13862 -33.04449 -30.85272 -29.98841 -28.26118 -27.65998 -27.46125 -26.85300 -24.51785 -23.63212 -23.27571 -22.19078 -21.61940 -21.04929 -19.80944 -18.78424 -18.49348 -18.38992 -17.46497 -16.97781 -16.93009 -16.75845 -16.41338 -16.11003 -15.95082 -15.58788 -15.40413 -15.07064 -14.92974 -14.46537 -14.37101 -14.23666 -14.16554 -13.98136 -13.90145 -13.71219 -13.52614 -13.26953 -13.06931 -12.98532 -12.74324 -12.65950 -12.51084 -12.44387 -12.34004 -12.18818 -12.08314 -11.97036 -11.37126 -11.07649 -10.94292 -10.67770 -9.92676 -9.56772 -9.20950 -8.81291 -8.47607 -6.16340 -1.57671 -0.12490 0.36888 0.56623 0.71523 1.14576 1.15854 1.35488 1.45022 1.50444 1.79741 2.16464 2.46128 2.58993 2.73552 2.82505 3.13523 3.44504 3.63312 3.82170 3.84201 3.88030 3.93277 4.14916 4.18572 4.30028 4.32882 4.41117 4.45579 4.53006 4.57438 4.70566 4.73100 4.89125 4.89646 4.92695 4.94353 5.01808 5.03743 5.08108 5.16229 5.24197 5.32566 5.40154 5.54706 5.57641 5.60986 5.64234 5.69107 5.79803 5.95308 5.98534 6.09631 6.31857 6.96973 7.75191 8.74808 Molecular weight = 363.13amu Principal moments of inertia in cm(-1) A = 0.015130 B = 0.002093 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.228084 B =13377.497184 C =15200.662567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.088 4.088 3 C -0.089 4.089 4 C -0.089 4.089 5 C -0.114 4.114 6 C -0.094 4.094 7 C -0.051 4.051 8 C 0.328 3.672 9 N -0.466 5.466 10 C -0.124 4.124 11 C 0.110 3.890 12 C -0.077 4.077 13 C -0.144 4.144 14 C -0.085 4.085 15 C -0.159 4.159 16 C 0.099 3.901 17 O -0.228 6.228 18 C -0.414 4.414 19 H 0.103 0.897 20 C -0.020 4.020 21 N -0.918 5.918 22 Si 1.014 2.986 23 H -0.258 1.258 24 H -0.273 1.273 25 H -0.258 1.258 26 C -0.195 4.195 27 C 0.487 3.513 28 O -0.454 6.454 29 O -0.290 6.290 30 C -0.076 4.076 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.156 0.844 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.134 0.866 39 H 0.169 0.831 40 H 0.180 0.820 41 H 0.162 0.838 42 H 0.124 0.876 43 H 0.272 0.728 44 H 0.131 0.869 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.432 31.280 -1.683 31.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.088 4.088 3 C -0.107 4.107 4 C -0.089 4.089 5 C -0.171 4.171 6 C -0.114 4.114 7 C -0.052 4.052 8 C 0.117 3.883 9 N -0.195 5.195 10 C -0.230 4.230 11 C 0.091 3.909 12 C -0.077 4.077 13 C -0.162 4.162 14 C -0.103 4.103 15 C -0.178 4.178 16 C 0.049 3.951 17 O -0.135 6.135 18 C -0.490 4.490 19 H 0.120 0.880 20 C -0.218 4.218 21 N -0.556 5.556 22 Si 0.833 3.167 23 H -0.182 1.182 24 H -0.197 1.197 25 H -0.182 1.182 26 C -0.215 4.215 27 C 0.331 3.669 28 O -0.339 6.339 29 O -0.193 6.193 30 C -0.096 4.096 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.174 0.826 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.152 0.848 39 H 0.186 0.814 40 H 0.197 0.803 41 H 0.180 0.820 42 H 0.142 0.858 43 H 0.081 0.919 44 H 0.148 0.852 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.084 30.461 -1.627 30.524 hybrid contribution 1.597 -1.358 0.005 2.096 sum 2.681 29.103 -1.622 29.271 Atomic orbital electron populations 1.20877 0.88703 1.04103 1.03498 1.20126 0.97771 0.91972 0.98945 1.21557 0.93423 0.98768 0.96978 1.20110 0.94261 0.95509 0.98998 1.20867 1.00216 0.92501 1.03477 1.21306 1.00686 0.90770 0.98600 1.17543 0.92670 0.86143 1.08866 1.23966 0.76769 0.95113 0.92456 1.70962 1.29724 0.97524 1.21307 1.21530 0.89269 0.94675 1.17518 1.22944 0.97252 0.90853 0.79830 1.18732 0.92903 0.92115 1.03950 1.22606 0.90999 1.02694 0.99923 1.21190 0.98511 0.92768 0.97830 1.20907 0.97093 0.93857 1.05984 1.19736 0.94548 0.85008 0.95848 1.83974 1.35889 1.12844 1.80827 1.21731 0.86153 0.88283 1.52866 0.88024 1.26511 1.01998 0.97346 0.95956 1.70167 1.25067 1.11902 1.48417 0.84710 0.75643 0.76459 0.79863 1.18241 1.19739 1.18233 1.21506 0.97205 0.94918 1.07841 1.21926 0.90493 0.80456 0.74040 1.90951 1.25384 1.71052 1.46515 1.85000 1.25591 1.30208 1.78548 1.21228 0.91229 0.99805 0.97335 0.90037 0.91030 0.89658 0.82634 0.90025 0.89646 0.91087 0.84780 0.81376 0.80328 0.82012 0.85782 0.91851 0.85186 0.84359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 10.01 71.24 0.71 -0.20 16 2 C -0.09 -1.09 5.87 -19.90 -0.12 -1.21 16 3 C -0.09 -0.89 9.35 22.34 0.21 -0.68 16 4 C -0.09 -1.04 5.87 -19.90 -0.12 -1.15 16 5 C -0.11 -0.73 10.01 71.24 0.71 -0.02 16 6 C -0.09 -1.51 9.34 22.54 0.21 -1.30 16 7 C -0.05 -1.01 5.87 -20.10 -0.12 -1.12 16 8 C 0.33 8.21 7.78 87.39 0.68 8.89 16 9 N -0.47 -12.81 7.27 -293.06 -2.13 -14.94 16 10 C -0.12 -3.68 6.84 40.78 0.28 -3.40 16 11 C 0.11 3.31 10.02 24.36 0.24 3.56 16 12 C -0.08 -2.67 5.86 -20.19 -0.12 -2.79 16 13 C -0.14 -4.59 9.32 22.65 0.21 -4.37 16 14 C -0.09 -2.66 10.02 22.20 0.22 -2.44 16 15 C -0.16 -6.31 9.99 22.49 0.22 -6.08 16 16 C 0.10 4.68 6.64 22.53 0.15 4.83 16 17 O -0.23 -13.24 9.76 -22.82 -0.22 -13.47 16 18 C -0.41 -23.40 9.48 67.92 0.64 -22.76 16 19 H 0.10 5.21 5.20 -2.91 -0.02 5.20 16 20 C -0.02 -1.12 5.49 84.83 0.47 -0.66 16 21 N -0.92 -55.30 13.67 21.61 0.30 -55.01 16 22 Si 1.01 42.26 29.55 68.60 2.03 44.29 16 23 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 24 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 25 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 26 C -0.20 -8.15 8.92 22.75 0.20 -7.95 16 27 C 0.49 14.94 8.88 70.29 0.62 15.56 16 28 O -0.45 -15.68 18.05 18.83 0.34 -15.34 16 29 O -0.29 -7.98 10.34 9.26 0.10 -7.89 16 30 C -0.08 -1.30 9.31 22.54 0.21 -1.09 16 31 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.07 0.60 8.08 -2.39 -0.02 0.58 16 33 H 0.08 0.40 8.08 -2.39 -0.02 0.38 16 34 H 0.16 0.67 8.06 -2.91 -0.02 0.65 16 35 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.08 0.30 8.08 -2.39 -0.02 0.28 16 37 H 0.07 0.45 8.08 -2.39 -0.02 0.44 16 38 H 0.13 2.04 7.83 -2.91 -0.02 2.02 16 39 H 0.17 4.37 8.06 -2.91 -0.02 4.35 16 40 H 0.18 5.08 4.68 -2.91 -0.01 5.06 16 41 H 0.16 3.65 8.06 -2.91 -0.02 3.63 16 42 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 43 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 44 H 0.13 5.40 5.63 -2.91 -0.02 5.38 16 45 H 0.14 2.38 7.76 -2.91 -0.02 2.35 16 Total: -1.00 -72.58 395.09 6.99 -65.59 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 1.05 Total: 21.15 kcal Atomic # 6 Polarization: -29.93 SS G_CDS: 5.53 Total: -24.40 kcal Atomic # 7 Polarization: -68.11 SS G_CDS: -1.83 Total: -69.95 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: 0.21 Total: -36.69 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -72.58 6.99 -65.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096130176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.225 kcal (2) G-P(sol) polarization free energy of solvation -72.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds