Wall clock time and date at job start Tue Mar 31 2020 05:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38400 * 119.84066 * 2 1 4 4 C 1.37909 * 120.15103 * 179.97438 * 3 2 1 5 5 C 1.39693 * 119.84440 * 359.97438 * 4 3 2 6 6 C 1.47659 * 120.15121 * 179.97438 * 5 4 3 7 7 N 1.30431 * 124.20725 * 359.72815 * 6 5 4 8 8 C 1.36430 * 109.09726 * 179.86300 * 7 6 5 9 9 C 1.37742 * 127.28835 * 180.14789 * 8 7 6 10 10 C 1.46678 * 120.00037 * 355.13473 * 9 8 7 11 11 C 1.40158 * 120.16239 * 5.50309 * 10 9 8 12 12 C 1.37867 * 119.93887 * 179.78488 * 11 10 9 13 13 C 1.38335 * 120.27083 * 0.47558 * 12 11 10 14 14 C 1.39051 * 120.32922 * 359.77846 * 13 12 11 15 15 O 1.35764 * 119.97445 * 180.02562 * 14 13 12 16 16 C 1.34824 * 116.99859 * 185.64201 * 15 14 13 17 17 H 1.08002 * 120.00386 * 354.93473 * 16 15 14 18 18 C 1.38653 * 119.99976 * 174.92974 * 16 15 14 19 19 N 1.31556 * 120.00478 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99840 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47287 * 89.99686 * 20 18 16 22 22 H 1.48506 * 109.47102 * 210.00127 * 20 18 16 23 23 H 1.48503 * 109.47000 * 329.99564 * 20 18 16 24 24 C 1.38508 * 120.05427 * 359.97438 * 14 13 12 25 25 C 1.47588 * 105.42224 * 0.38135 * 8 7 6 26 26 O 1.21644 * 127.40024 * 179.77220 * 25 8 7 27 27 O 1.34695 * 124.20171 * 180.02562 * 6 5 4 28 28 C 1.39643 * 119.69274 * 0.02562 * 5 4 3 29 29 C 1.37951 * 119.84674 * 359.76091 * 28 5 4 30 30 C 1.50702 * 119.92665 * 180.23519 * 29 28 5 31 31 H 1.09005 * 109.46548 * 90.00409 * 1 2 3 32 32 H 1.08995 * 109.47304 * 330.00735 * 1 2 3 33 33 H 1.08999 * 109.47188 * 210.00353 * 1 2 3 34 34 H 1.07995 * 119.92749 * 359.97438 * 3 2 1 35 35 H 1.08001 * 120.08325 * 179.97438 * 4 3 2 36 36 H 1.08001 * 120.00025 * 175.13345 * 9 8 7 37 37 H 1.08003 * 120.03095 * 0.02562 * 11 10 9 38 38 H 1.08001 * 119.86022 * 180.23243 * 12 11 10 39 39 H 1.07999 * 119.83444 * 179.76048 * 13 12 11 40 40 H 0.97001 * 120.00199 * 180.02562 * 19 18 16 41 41 H 1.07993 * 120.13684 * 180.02562 * 24 14 13 42 42 H 1.08007 * 120.07597 * 179.97438 * 28 5 4 43 43 H 1.08995 * 109.46963 * 270.25775 * 30 29 28 44 44 H 1.09004 * 109.46658 * 30.25542 * 30 29 28 45 45 H 1.08993 * 109.46966 * 150.25560 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2005 0.0000 4 6 3.5747 1.2080 0.0005 5 6 4.2765 0.0001 0.0016 6 6 5.7531 0.0002 0.0016 7 7 6.4863 1.0789 -0.0045 8 6 7.8034 0.7234 0.0006 9 6 8.8946 1.5639 -0.0002 10 6 8.7036 3.0136 -0.1150 11 6 7.4114 3.5564 -0.1080 12 6 7.2373 4.9201 -0.2116 13 6 8.3331 5.7558 -0.3326 14 6 9.6199 5.2289 -0.3462 15 8 10.6902 6.0557 -0.4647 16 6 11.9009 5.4756 -0.5890 17 1 11.9965 4.4028 -0.5091 18 6 13.0233 6.2564 -0.8194 19 7 14.2046 5.6904 -0.9412 20 14 12.8580 8.1119 -0.9571 21 1 13.0140 8.7239 0.3869 22 1 13.9096 8.6366 -1.8650 23 1 11.5190 8.4505 -1.5027 24 6 9.8106 3.8613 -0.2378 25 6 7.8116 -0.7525 0.0015 26 8 8.7820 -1.4860 0.0017 27 8 6.5103 -1.1138 0.0021 28 6 3.5750 -1.2074 0.0016 29 6 2.1956 -1.2000 0.0055 30 6 1.4368 -2.5021 0.0109 31 1 -0.3632 -0.0001 -1.0277 32 1 -0.3633 0.8900 0.5137 33 1 -0.3633 -0.8899 0.5139 34 1 1.6519 2.1336 -0.0004 35 1 4.1110 2.1454 0.0001 36 1 9.8909 1.1555 0.0836 37 1 6.5530 2.9073 -0.0175 38 1 6.2412 5.3373 -0.2023 39 1 8.1884 6.8227 -0.4172 40 1 14.9899 6.2367 -1.1021 41 1 10.8094 3.4507 -0.2477 42 1 4.1113 -2.1449 0.0020 43 1 1.2549 -2.8208 -1.0154 44 1 2.0223 -3.2617 0.5289 45 1 0.4844 -2.3655 0.5231 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096130179.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:57 Heat of formation + Delta-G solvation = 13.053269 kcal Electronic energy + Delta-G solvation = -30093.561953 eV Core-core repulsion = 25815.782087 eV Total energy + Delta-G solvation = -4277.779866 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.130 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.92341 -39.91016 -39.35170 -38.05034 -37.12171 -35.37895 -34.22907 -32.64393 -32.56669 -32.11220 -29.71624 -29.08000 -28.13034 -26.99344 -25.48569 -25.05002 -22.90185 -22.81797 -21.89438 -21.54446 -20.60840 -19.98933 -18.07411 -17.50213 -17.21881 -17.16274 -16.56830 -16.06349 -15.66567 -15.39442 -15.31918 -14.88343 -14.71204 -14.45289 -14.03459 -13.89510 -13.84495 -13.53485 -13.42698 -13.39586 -13.20596 -13.00480 -12.81555 -12.44794 -12.38382 -12.36032 -12.31063 -12.16577 -11.75794 -11.59314 -11.48222 -11.29221 -11.03829 -10.91345 -10.77138 -10.33203 -9.82613 -9.69758 -9.57778 -9.15903 -8.98109 -8.84843 -7.80581 -7.46493 -6.49702 -4.18427 -0.39832 0.71620 1.01147 1.92142 2.14122 2.20919 2.31466 2.98823 3.17460 3.19980 3.33588 3.43742 3.60030 3.73783 4.16175 4.34367 4.36582 4.44580 4.57156 4.67702 4.71905 4.84016 4.88926 5.00817 5.02097 5.09528 5.16979 5.23039 5.26099 5.33099 5.39233 5.43893 5.54249 5.64029 5.67751 5.74967 5.77805 5.88368 5.96445 6.03552 6.08898 6.21466 6.23044 6.41031 6.47470 6.53599 6.96124 7.01896 7.03410 7.08854 7.37965 7.46985 7.64427 7.91689 8.84588 9.43665 10.57569 Molecular weight = 363.13amu Principal moments of inertia in cm(-1) A = 0.016707 B = 0.001978 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.572418 B =14150.842644 C =15778.532673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.064 4.064 3 C -0.121 4.121 4 C -0.063 4.063 5 C -0.034 4.034 6 C 0.310 3.690 7 N -0.446 5.446 8 C -0.134 4.134 9 C 0.123 3.877 10 C -0.080 4.080 11 C -0.149 4.149 12 C -0.102 4.102 13 C -0.149 4.149 14 C 0.139 3.861 15 O -0.216 6.216 16 C -0.394 4.394 17 H 0.106 0.894 18 C 0.065 3.935 19 N -0.876 5.876 20 Si 0.906 3.094 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.259 1.259 24 C -0.173 4.173 25 C 0.485 3.515 26 O -0.433 6.433 27 O -0.292 6.292 28 C -0.077 4.077 29 C -0.094 4.094 30 C -0.117 4.117 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.133 0.867 35 H 0.142 0.858 36 H 0.154 0.846 37 H 0.163 0.837 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.281 0.719 41 H 0.141 0.859 42 H 0.133 0.867 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.072 -11.245 2.079 29.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.065 4.065 3 C -0.139 4.139 4 C -0.083 4.083 5 C -0.036 4.036 6 C 0.098 3.902 7 N -0.175 5.175 8 C -0.240 4.240 9 C 0.104 3.896 10 C -0.081 4.081 11 C -0.168 4.168 12 C -0.120 4.120 13 C -0.168 4.168 14 C 0.088 3.912 15 O -0.121 6.121 16 C -0.470 4.470 17 H 0.123 0.877 18 C -0.139 4.139 19 N -0.513 5.513 20 Si 0.732 3.268 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.183 1.183 24 C -0.192 4.192 25 C 0.328 3.672 26 O -0.317 6.317 27 O -0.195 6.195 28 C -0.096 4.096 29 C -0.094 4.094 30 C -0.174 4.174 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.151 0.849 35 H 0.160 0.840 36 H 0.171 0.829 37 H 0.179 0.821 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.091 0.909 41 H 0.159 0.841 42 H 0.151 0.849 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -26.390 -10.682 2.027 28.542 hybrid contribution 0.837 -0.053 -0.100 0.845 sum -25.553 -10.735 1.927 27.784 Atomic orbital electron populations 1.20938 0.90914 1.03234 1.02732 1.20019 0.96353 0.92586 0.97508 1.20986 0.93516 0.97892 1.01496 1.21238 0.93916 0.97288 0.95842 1.17414 0.84175 0.94922 1.07060 1.23342 0.92852 0.78917 0.95107 1.70977 1.01764 1.25755 1.19020 1.21474 0.92037 0.91724 1.18764 1.22965 0.96318 0.92003 0.78361 1.18618 0.94228 0.90336 1.04902 1.22257 0.97551 0.95628 1.01320 1.20753 0.97516 0.93305 1.00401 1.20629 0.90096 1.00190 1.05870 1.18921 0.87992 0.89109 0.95197 1.83603 1.13985 1.33945 1.80589 1.20716 0.80246 0.94931 1.51093 0.87690 1.24466 0.93651 1.00388 0.95384 1.69640 0.98399 1.36946 1.46351 0.86169 0.78783 0.83212 0.78668 1.19833 1.20747 1.18349 1.21623 0.99002 0.93230 1.05391 1.21858 0.80626 0.90058 0.74669 1.90971 1.32149 1.62944 1.45632 1.84987 1.20182 1.35562 1.78800 1.21168 0.93644 0.97296 0.97536 1.19642 0.93023 0.95338 1.01356 1.20871 1.00096 0.93759 1.02659 0.90692 0.91216 0.90869 0.84939 0.84013 0.82875 0.82061 0.86146 0.86058 0.90921 0.84120 0.84868 0.90902 0.91327 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.52 9.60 36.01 0.35 -0.17 16 2 C -0.06 -0.44 5.89 -104.52 -0.62 -1.05 16 3 C -0.12 -0.89 9.68 -39.64 -0.38 -1.27 16 4 C -0.06 -0.58 9.66 -39.16 -0.38 -0.96 16 5 C -0.03 -0.36 5.87 -104.98 -0.62 -0.98 16 6 C 0.31 4.06 7.78 -14.30 -0.11 3.95 16 7 N -0.45 -6.40 7.26 -7.85 -0.06 -6.45 16 8 C -0.13 -2.06 6.84 -82.19 -0.56 -2.62 16 9 C 0.12 1.89 10.02 -36.36 -0.36 1.53 16 10 C -0.08 -1.40 5.86 -105.12 -0.62 -2.01 16 11 C -0.15 -2.41 9.32 -39.00 -0.36 -2.77 16 12 C -0.10 -1.58 10.02 -39.68 -0.40 -1.98 16 13 C -0.15 -2.70 9.99 -39.24 -0.39 -3.09 16 14 C 0.14 3.01 6.64 -39.18 -0.26 2.75 16 15 O -0.22 -5.41 8.58 0.02 0.00 -5.41 16 16 C -0.39 -10.66 9.94 30.89 0.31 -10.35 16 17 H 0.11 2.87 5.43 -52.49 -0.29 2.59 16 18 C 0.07 1.77 5.49 -17.52 -0.10 1.67 16 19 N -0.88 -24.67 13.96 55.48 0.77 -23.90 16 20 Si 0.91 21.04 28.62 -169.99 -4.86 16.17 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.26 -6.01 7.11 56.52 0.40 -5.61 16 24 C -0.17 -3.47 8.92 -38.83 -0.35 -3.82 16 25 C 0.48 7.72 8.88 34.54 0.31 8.02 16 26 O -0.43 -7.74 18.05 -18.83 -0.34 -8.08 16 27 O -0.29 -4.19 10.34 -21.54 -0.22 -4.41 16 28 C -0.08 -0.69 9.34 -39.16 -0.37 -1.06 16 29 C -0.09 -0.69 5.87 -104.68 -0.61 -1.31 16 30 C -0.12 -0.58 9.60 36.01 0.35 -0.23 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 33 H 0.07 0.25 5.92 -51.93 -0.31 -0.06 16 34 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.14 1.27 7.76 -52.49 -0.41 0.86 16 36 H 0.15 2.09 8.06 -52.49 -0.42 1.67 16 37 H 0.16 2.40 4.68 -52.48 -0.25 2.16 16 38 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 39 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 40 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.14 2.92 5.63 -52.49 -0.30 2.62 16 42 H 0.13 1.12 7.83 -52.48 -0.41 0.70 16 43 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 45 H 0.07 0.27 5.92 -51.93 -0.31 -0.04 16 LS Contribution 389.51 15.07 5.87 5.87 Total: -1.00 -30.71 389.51 -8.79 -39.49 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -4.77 Total: 2.48 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -5.18 Total: -15.76 kcal Atomic # 7 Polarization: -31.07 SS G_CDS: 0.72 Total: -30.35 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.56 Total: -17.90 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.86 Total: 16.17 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.71 -8.79 -39.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096130179.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.548 kcal (2) G-P(sol) polarization free energy of solvation -30.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds