Wall clock time and date at job start Tue Mar 31 2020 05:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38400 * 119.84066 * 2 1 4 4 C 1.37909 * 120.15103 * 179.97438 * 3 2 1 5 5 C 1.39693 * 119.84440 * 359.97438 * 4 3 2 6 6 C 1.47659 * 120.15121 * 179.97438 * 5 4 3 7 7 N 1.30431 * 124.20725 * 359.72815 * 6 5 4 8 8 C 1.36430 * 109.09726 * 179.86300 * 7 6 5 9 9 C 1.37742 * 127.28835 * 180.14789 * 8 7 6 10 10 C 1.46678 * 120.00037 * 355.13473 * 9 8 7 11 11 C 1.40158 * 120.16239 * 5.50309 * 10 9 8 12 12 C 1.37867 * 119.93887 * 179.78488 * 11 10 9 13 13 C 1.38335 * 120.27083 * 0.47558 * 12 11 10 14 14 C 1.39051 * 120.32922 * 359.77846 * 13 12 11 15 15 O 1.35764 * 119.97445 * 180.02562 * 14 13 12 16 16 C 1.34824 * 116.99859 * 185.64201 * 15 14 13 17 17 H 1.08002 * 120.00386 * 354.93473 * 16 15 14 18 18 C 1.38653 * 119.99976 * 174.92974 * 16 15 14 19 19 N 1.31556 * 120.00478 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99840 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47287 * 89.99686 * 20 18 16 22 22 H 1.48506 * 109.47102 * 210.00127 * 20 18 16 23 23 H 1.48503 * 109.47000 * 329.99564 * 20 18 16 24 24 C 1.38508 * 120.05427 * 359.97438 * 14 13 12 25 25 C 1.47588 * 105.42224 * 0.38135 * 8 7 6 26 26 O 1.21644 * 127.40024 * 179.77220 * 25 8 7 27 27 O 1.34695 * 124.20171 * 180.02562 * 6 5 4 28 28 C 1.39643 * 119.69274 * 0.02562 * 5 4 3 29 29 C 1.37951 * 119.84674 * 359.76091 * 28 5 4 30 30 C 1.50702 * 119.92665 * 180.23519 * 29 28 5 31 31 H 1.09005 * 109.46548 * 90.00409 * 1 2 3 32 32 H 1.08995 * 109.47304 * 330.00735 * 1 2 3 33 33 H 1.08999 * 109.47188 * 210.00353 * 1 2 3 34 34 H 1.07995 * 119.92749 * 359.97438 * 3 2 1 35 35 H 1.08001 * 120.08325 * 179.97438 * 4 3 2 36 36 H 1.08001 * 120.00025 * 175.13345 * 9 8 7 37 37 H 1.08003 * 120.03095 * 0.02562 * 11 10 9 38 38 H 1.08001 * 119.86022 * 180.23243 * 12 11 10 39 39 H 1.07999 * 119.83444 * 179.76048 * 13 12 11 40 40 H 0.97001 * 120.00199 * 180.02562 * 19 18 16 41 41 H 1.07993 * 120.13684 * 180.02562 * 24 14 13 42 42 H 1.08007 * 120.07597 * 179.97438 * 28 5 4 43 43 H 1.08995 * 109.46963 * 270.25775 * 30 29 28 44 44 H 1.09004 * 109.46658 * 30.25542 * 30 29 28 45 45 H 1.08993 * 109.46966 * 150.25560 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2005 0.0000 4 6 3.5747 1.2080 0.0005 5 6 4.2765 0.0001 0.0016 6 6 5.7531 0.0002 0.0016 7 7 6.4863 1.0789 -0.0045 8 6 7.8034 0.7234 0.0006 9 6 8.8946 1.5639 -0.0002 10 6 8.7036 3.0136 -0.1150 11 6 7.4114 3.5564 -0.1080 12 6 7.2373 4.9201 -0.2116 13 6 8.3331 5.7558 -0.3326 14 6 9.6199 5.2289 -0.3462 15 8 10.6902 6.0557 -0.4647 16 6 11.9009 5.4756 -0.5890 17 1 11.9965 4.4028 -0.5091 18 6 13.0233 6.2564 -0.8194 19 7 14.2046 5.6904 -0.9412 20 14 12.8580 8.1119 -0.9571 21 1 13.0140 8.7239 0.3869 22 1 13.9096 8.6366 -1.8650 23 1 11.5190 8.4505 -1.5027 24 6 9.8106 3.8613 -0.2378 25 6 7.8116 -0.7525 0.0015 26 8 8.7820 -1.4860 0.0017 27 8 6.5103 -1.1138 0.0021 28 6 3.5750 -1.2074 0.0016 29 6 2.1956 -1.2000 0.0055 30 6 1.4368 -2.5021 0.0109 31 1 -0.3632 -0.0001 -1.0277 32 1 -0.3633 0.8900 0.5137 33 1 -0.3633 -0.8899 0.5139 34 1 1.6519 2.1336 -0.0004 35 1 4.1110 2.1454 0.0001 36 1 9.8909 1.1555 0.0836 37 1 6.5530 2.9073 -0.0175 38 1 6.2412 5.3373 -0.2023 39 1 8.1884 6.8227 -0.4172 40 1 14.9899 6.2367 -1.1021 41 1 10.8094 3.4507 -0.2477 42 1 4.1113 -2.1449 0.0020 43 1 1.2549 -2.8208 -1.0154 44 1 2.0223 -3.2617 0.5289 45 1 0.4844 -2.3655 0.5231 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096130179.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:56 Heat of formation + Delta-G solvation = -1.801938 kcal Electronic energy + Delta-G solvation = -30094.206123 eV Core-core repulsion = 25815.782087 eV Total energy + Delta-G solvation = -4278.424036 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.130 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.13341 -40.94380 -40.54452 -39.37308 -38.67857 -36.64016 -34.97854 -34.45565 -33.41131 -33.17997 -31.07387 -30.35874 -28.87655 -27.72530 -27.21647 -26.19099 -24.09384 -23.72102 -23.08295 -22.79356 -21.60553 -21.10525 -19.83380 -19.02533 -18.52626 -18.40334 -17.57491 -17.01582 -16.91037 -16.65354 -16.24443 -16.11660 -15.86646 -15.71802 -15.38687 -15.21374 -15.07735 -14.58685 -14.48375 -14.28374 -14.19789 -14.03262 -13.97261 -13.74943 -13.52546 -13.43330 -13.12105 -13.06305 -12.79827 -12.71672 -12.56428 -12.50760 -12.22643 -12.05420 -12.05164 -11.82226 -11.44124 -11.09927 -11.00524 -10.72722 -9.89023 -9.68348 -9.26202 -8.80805 -8.50327 -6.24172 -1.59015 -0.13831 0.40506 0.54205 0.66498 1.13386 1.14953 1.32517 1.36615 1.51955 1.77715 2.27483 2.45363 2.58055 2.74470 2.77218 2.99458 3.13660 3.61065 3.82206 3.84089 3.89800 3.96022 4.07927 4.15014 4.26132 4.28978 4.33630 4.43470 4.54500 4.56924 4.76064 4.78236 4.82539 4.86233 4.90070 4.96642 4.99596 5.03522 5.04155 5.23486 5.34757 5.36811 5.38264 5.45564 5.60982 5.64988 5.68134 5.71300 5.78340 5.85750 5.97149 6.14561 6.30757 6.83547 7.55307 8.60866 Molecular weight = 363.13amu Principal moments of inertia in cm(-1) A = 0.016707 B = 0.001978 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.572418 B =14150.842644 C =15778.532673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.056 4.056 3 C -0.123 4.123 4 C -0.066 4.066 5 C -0.065 4.065 6 C 0.331 3.669 7 N -0.467 5.467 8 C -0.120 4.120 9 C 0.104 3.896 10 C -0.079 4.079 11 C -0.137 4.137 12 C -0.086 4.086 13 C -0.147 4.147 14 C 0.104 3.896 15 O -0.242 6.242 16 C -0.400 4.400 17 H 0.082 0.918 18 C 0.009 3.991 19 N -0.923 5.923 20 Si 0.971 3.029 21 H -0.266 1.266 22 H -0.271 1.271 23 H -0.259 1.259 24 C -0.191 4.191 25 C 0.486 3.514 26 O -0.455 6.455 27 O -0.291 6.291 28 C -0.082 4.082 29 C -0.099 4.099 30 C -0.118 4.118 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.158 0.842 35 H 0.143 0.857 36 H 0.161 0.839 37 H 0.182 0.818 38 H 0.169 0.831 39 H 0.140 0.860 40 H 0.284 0.716 41 H 0.119 0.881 42 H 0.133 0.867 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.466 -11.073 2.241 34.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.057 4.057 3 C -0.140 4.140 4 C -0.085 4.085 5 C -0.066 4.066 6 C 0.120 3.880 7 N -0.196 5.196 8 C -0.226 4.226 9 C 0.084 3.916 10 C -0.079 4.079 11 C -0.155 4.155 12 C -0.103 4.103 13 C -0.166 4.166 14 C 0.056 3.944 15 O -0.150 6.150 16 C -0.476 4.476 17 H 0.099 0.901 18 C -0.189 4.189 19 N -0.563 5.563 20 Si 0.793 3.207 21 H -0.191 1.191 22 H -0.196 1.196 23 H -0.183 1.183 24 C -0.211 4.211 25 C 0.330 3.670 26 O -0.340 6.340 27 O -0.194 6.194 28 C -0.102 4.102 29 C -0.099 4.099 30 C -0.174 4.174 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.175 0.825 35 H 0.161 0.839 36 H 0.178 0.822 37 H 0.198 0.802 38 H 0.187 0.813 39 H 0.157 0.843 40 H 0.094 0.906 41 H 0.137 0.863 42 H 0.151 0.849 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -31.839 -10.532 2.198 33.608 hybrid contribution 1.940 -0.480 -0.106 2.002 sum -29.899 -11.012 2.092 31.931 Atomic orbital electron populations 1.21037 0.88708 1.04448 1.03717 1.20440 0.97989 0.92138 0.95124 1.21304 0.92805 0.99263 1.00642 1.21364 0.94819 0.96693 0.95653 1.17560 0.82522 0.96316 1.10214 1.24036 0.93832 0.78043 0.92040 1.70939 1.00928 1.25946 1.21785 1.21486 0.92623 0.91271 1.17218 1.22892 0.96992 0.91261 0.80406 1.18729 0.94049 0.90920 1.04244 1.22670 0.97323 0.96464 0.99020 1.21266 0.98822 0.92580 0.97674 1.20973 0.89072 1.01647 1.04938 1.19487 0.88543 0.89646 0.96762 1.83542 1.13767 1.34460 1.83207 1.20672 0.81719 0.94236 1.51014 0.90058 1.25289 0.93262 1.04953 0.95414 1.69732 0.99172 1.38578 1.48829 0.85205 0.78758 0.77722 0.78985 1.19116 1.19558 1.18328 1.21545 0.99054 0.93462 1.06993 1.21966 0.80871 0.90177 0.74018 1.90957 1.33133 1.63480 1.46449 1.85006 1.19601 1.36247 1.78555 1.21296 0.94598 0.96803 0.97483 1.19957 0.92469 0.96843 1.00630 1.20941 1.00532 0.92493 1.03445 0.89618 0.90051 0.89732 0.82457 0.83895 0.82202 0.80195 0.81345 0.84253 0.90612 0.86322 0.84896 0.90100 0.91207 0.89255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.50 9.60 71.24 0.68 0.18 16 2 C -0.06 -0.56 5.89 -19.80 -0.12 -0.67 16 3 C -0.12 -1.34 9.68 22.23 0.22 -1.12 16 4 C -0.07 -1.03 9.66 22.54 0.22 -0.81 16 5 C -0.06 -1.25 5.87 -20.10 -0.12 -1.36 16 6 C 0.33 8.27 7.78 87.39 0.68 8.94 16 7 N -0.47 -12.74 7.26 -293.06 -2.13 -14.87 16 8 C -0.12 -3.67 6.84 40.78 0.28 -3.39 16 9 C 0.10 3.29 10.02 24.36 0.24 3.53 16 10 C -0.08 -2.78 5.86 -20.19 -0.12 -2.89 16 11 C -0.14 -4.14 9.32 22.65 0.21 -3.93 16 12 C -0.09 -2.40 10.02 22.20 0.22 -2.17 16 13 C -0.15 -5.14 9.99 22.49 0.22 -4.92 16 14 C 0.10 4.63 6.64 22.53 0.15 4.78 16 15 O -0.24 -12.63 8.58 -22.83 -0.20 -12.82 16 16 C -0.40 -22.99 9.94 67.92 0.68 -22.31 16 17 H 0.08 4.88 5.43 -2.91 -0.02 4.87 16 18 C 0.01 0.53 5.49 84.83 0.47 1.00 16 19 N -0.92 -54.65 13.96 21.61 0.30 -54.35 16 20 Si 0.97 44.58 28.62 68.60 1.96 46.54 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 23 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 24 C -0.19 -8.10 8.92 22.75 0.20 -7.90 16 25 C 0.49 15.46 8.88 70.29 0.62 16.08 16 26 O -0.45 -16.49 18.05 18.84 0.34 -16.15 16 27 O -0.29 -8.15 10.34 9.12 0.09 -8.06 16 28 C -0.08 -1.32 9.34 22.54 0.21 -1.11 16 29 C -0.10 -1.17 5.87 -19.90 -0.12 -1.28 16 30 C -0.12 -0.79 9.60 71.24 0.68 -0.11 16 31 H 0.09 0.24 8.14 -2.38 -0.02 0.22 16 32 H 0.08 0.19 8.08 -2.39 -0.02 0.17 16 33 H 0.08 0.19 5.92 -2.39 -0.01 0.17 16 34 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 35 H 0.14 2.13 7.76 -2.91 -0.02 2.11 16 36 H 0.16 4.70 8.06 -2.91 -0.02 4.68 16 37 H 0.18 4.85 4.68 -2.91 -0.01 4.84 16 38 H 0.17 3.15 8.06 -2.91 -0.02 3.13 16 39 H 0.14 4.32 8.06 -2.91 -0.02 4.29 16 40 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 41 H 0.12 5.47 5.63 -2.91 -0.02 5.45 16 42 H 0.13 2.06 7.83 -2.91 -0.02 2.03 16 43 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.07 0.47 8.08 -2.39 -0.02 0.45 16 45 H 0.09 0.31 5.92 -2.39 -0.01 0.29 16 Total: -1.00 -70.47 389.51 6.95 -63.52 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 1.06 Total: 15.66 kcal Atomic # 6 Polarization: -24.99 SS G_CDS: 5.52 Total: -19.47 kcal Atomic # 7 Polarization: -67.39 SS G_CDS: -1.83 Total: -69.22 kcal Atomic # 8 Polarization: -37.27 SS G_CDS: 0.24 Total: -37.04 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.96 Total: 46.54 kcal Total: -70.47 6.95 -63.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096130179.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.718 kcal (2) G-P(sol) polarization free energy of solvation -70.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds