Wall clock time and date at job start Tue Mar 31 2020 05:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00085 * 2 1 4 4 H 1.48503 * 109.47410 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47280 * 300.00090 * 3 2 1 6 6 H 1.48505 * 109.47132 * 60.00049 * 3 2 1 7 7 C 1.37880 * 119.99562 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99414 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00299 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47176 * 180.02562 * 9 7 2 11 11 O 1.42898 * 109.47446 * 180.02562 * 10 9 7 12 12 C 1.35908 * 117.00198 * 180.02562 * 11 10 9 13 13 C 1.38951 * 119.96016 * 359.97438 * 12 11 10 14 14 C 1.38331 * 120.33471 * 180.02562 * 13 12 11 15 15 C 1.37881 * 120.25365 * 359.97438 * 14 13 12 16 16 C 1.40063 * 119.91219 * 359.97438 * 15 14 13 17 17 C 1.46748 * 120.16146 * 179.72439 * 16 15 14 18 18 C 1.36533 * 120.00053 * 137.41245 * 17 16 15 19 19 C 1.47357 * 121.00701 * 154.46204 * 18 17 16 20 20 O 1.21657 * 119.70930 * 359.97438 * 19 18 17 21 21 N 1.34309 * 120.57984 * 179.71680 * 19 18 17 22 22 C 1.34279 * 122.87127 * 0.56193 * 21 19 18 23 23 O 1.21611 * 119.40657 * 179.70867 * 22 21 19 24 24 C 1.46990 * 121.18539 * 359.73105 * 22 21 19 25 25 C 1.39437 * 121.34779 * 180.02562 * 24 22 21 26 26 C 1.37920 * 119.67506 * 179.97438 * 25 24 22 27 27 C 1.38655 * 120.70962 * 0.02562 * 26 25 24 28 28 C 1.38076 * 120.51534 * 359.95589 * 27 26 25 29 29 C 1.38968 * 119.57645 * 0.04717 * 28 27 26 30 30 C 1.38317 * 119.95755 * 179.97438 * 12 11 10 31 31 H 0.96997 * 119.99577 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.46797 * 60.00790 * 9 7 2 33 33 H 1.08997 * 109.47410 * 300.00035 * 9 7 2 34 34 H 1.09005 * 109.47048 * 60.00152 * 10 9 7 35 35 H 1.09004 * 109.47008 * 300.00533 * 10 9 7 36 36 H 1.07994 * 119.83143 * 0.02562 * 13 12 11 37 37 H 1.07994 * 119.87409 * 179.97438 * 14 13 12 38 38 H 1.07996 * 120.03826 * 180.02562 * 15 14 13 39 39 H 1.08003 * 119.99945 * 317.41292 * 17 16 15 40 40 H 0.96994 * 118.56064 * 180.29713 * 21 19 18 41 41 H 1.08002 * 120.16254 * 359.97438 * 25 24 22 42 42 H 1.08010 * 119.64448 * 179.97438 * 26 25 24 43 43 H 1.08004 * 119.74302 * 179.97438 * 27 26 25 44 44 H 1.08003 * 120.20853 * 180.02562 * 28 27 26 45 45 H 1.07998 * 120.13314 * 359.97438 * 30 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 8 1.5307 -4.8997 -0.0011 12 6 2.2709 -6.0395 -0.0007 13 6 3.6585 -5.9658 -0.0002 14 6 4.4195 -7.1210 -0.0003 15 6 3.8070 -8.3563 -0.0003 16 6 2.4090 -8.4428 0.0003 17 6 1.7514 -9.7547 -0.0058 18 6 0.6679 -9.9789 0.7941 19 6 -0.3317 -11.0048 0.4481 20 8 -0.1934 -11.6639 -0.5651 21 7 -1.3915 -11.2221 1.2440 22 6 -1.6095 -10.5284 2.3729 23 8 -2.5934 -10.7741 3.0441 24 6 -0.6806 -9.4771 2.8116 25 6 -0.9035 -8.7550 3.9834 26 6 -0.0090 -7.7762 4.3629 27 6 1.1099 -7.5018 3.5912 28 6 1.3488 -8.2056 2.4276 29 6 0.4583 -9.1955 2.0295 30 6 1.6421 -7.2714 -0.0007 31 1 -0.4849 0.8401 -0.0004 32 1 0.6241 -2.5567 -0.8904 33 1 0.6247 -2.5571 0.8896 34 1 2.8719 -3.6044 0.8895 35 1 2.8719 -3.6043 -0.8905 36 1 4.1453 -5.0018 0.0002 37 1 5.4974 -7.0551 -0.0003 38 1 4.4045 -9.2560 0.0001 39 1 2.1246 -10.5429 -0.6430 40 1 -2.0291 -11.9076 0.9904 41 1 -1.7723 -8.9611 4.5910 42 1 -0.1823 -7.2169 5.2705 43 1 1.7999 -6.7316 3.9028 44 1 2.2221 -7.9881 1.8305 45 1 0.5637 -7.3297 -0.0006 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096189872.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:31 Heat of formation + Delta-G solvation = -29.264764 kcal Electronic energy + Delta-G solvation = -31197.583735 eV Core-core repulsion = 26917.968822 eV Total energy + Delta-G solvation = -4279.614913 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.130 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.87753 -40.31459 -39.30294 -38.80043 -37.54092 -35.31354 -34.63242 -33.47356 -31.79399 -31.04477 -30.84182 -29.63753 -29.16085 -25.70188 -25.04091 -24.63348 -23.37519 -22.74773 -22.06273 -21.35804 -20.44607 -19.00706 -18.64047 -17.94393 -17.62553 -16.48357 -16.36642 -16.10328 -15.93080 -15.88414 -15.58956 -15.45294 -15.16330 -14.71464 -14.57421 -14.45927 -14.34495 -14.26831 -13.67699 -13.31261 -13.05492 -12.97350 -12.77078 -12.40831 -12.23595 -11.87105 -11.84504 -11.57722 -11.21397 -11.02142 -10.91098 -10.83578 -10.65902 -10.63674 -10.56522 -10.51013 -10.02056 -9.76557 -9.37833 -9.37204 -9.19206 -8.53245 -8.19606 -8.11941 -6.17815 -4.23108 -0.41516 0.58367 1.11633 1.31730 1.38976 2.07095 2.41736 2.79349 3.21097 3.28258 3.31147 3.49547 3.55939 3.63678 3.69579 4.11091 4.26190 4.33421 4.44045 4.58964 4.69649 4.86063 4.93038 4.97877 5.03528 5.12741 5.18905 5.22282 5.29939 5.38484 5.39685 5.60837 5.65276 5.76157 5.81378 5.84854 5.88014 5.98927 6.09782 6.15096 6.20850 6.27446 6.30012 6.51602 6.52698 6.57250 6.59851 7.01321 7.38153 7.53398 7.53564 7.67924 7.89748 8.14194 8.82622 9.41892 10.93632 Molecular weight = 363.13amu Principal moments of inertia in cm(-1) A = 0.011607 B = 0.002417 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.810439 B =11584.181436 C =12720.523791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.064 3.936 11 O -0.311 6.311 12 C 0.143 3.857 13 C -0.189 4.189 14 C -0.083 4.083 15 C -0.141 4.141 16 C -0.063 4.063 17 C 0.050 3.950 18 C -0.174 4.174 19 C 0.574 3.426 20 O -0.500 6.500 21 N -0.666 5.666 22 C 0.573 3.427 23 O -0.500 6.500 24 C -0.154 4.154 25 C -0.046 4.046 26 C -0.127 4.127 27 C -0.074 4.074 28 C -0.126 4.126 29 C 0.000 4.000 30 C -0.126 4.126 31 H 0.263 0.737 32 H 0.028 0.972 33 H 0.028 0.972 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.136 0.864 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.153 0.847 40 H 0.418 0.582 41 H 0.140 0.860 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.155 0.845 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.021 -21.309 5.241 22.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.010 4.010 11 O -0.224 6.224 12 C 0.095 3.905 13 C -0.208 4.208 14 C -0.101 4.101 15 C -0.159 4.159 16 C -0.063 4.063 17 C 0.031 3.969 18 C -0.177 4.177 19 C 0.365 3.635 20 O -0.375 6.375 21 N -0.330 5.330 22 C 0.365 3.635 23 O -0.375 6.375 24 C -0.157 4.157 25 C -0.065 4.065 26 C -0.145 4.145 27 C -0.092 4.092 28 C -0.143 4.143 29 C -0.001 4.001 30 C -0.144 4.144 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.154 0.846 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.170 0.830 40 H 0.257 0.743 41 H 0.158 0.842 42 H 0.152 0.848 43 H 0.151 0.849 44 H 0.173 0.827 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.328 -21.461 5.131 22.700 hybrid contribution 0.283 0.811 -0.152 0.872 sum 5.611 -20.650 4.979 21.971 Atomic orbital electron populations 1.69982 1.06111 1.26970 1.49502 1.24992 0.94901 0.99423 0.94830 0.86440 0.79948 0.83249 0.77798 1.19636 1.20795 1.20796 1.20977 0.93037 0.90130 1.52473 0.92313 1.19128 0.94142 0.88938 0.98960 1.23401 0.97200 0.80622 0.99746 1.86228 1.36365 1.13089 1.86691 1.18998 0.90023 0.87620 0.93824 1.21681 0.93095 1.00341 1.05690 1.20886 0.99982 0.91500 0.97754 1.21171 0.92639 0.98257 1.03860 1.18533 0.93524 0.91329 1.02946 1.22734 0.88853 0.94009 0.91287 1.20387 0.98583 1.00478 0.98276 1.18231 0.81165 0.81593 0.82472 1.90897 1.75462 1.46715 1.24452 1.44534 1.26736 1.38077 1.23656 1.18222 0.85156 0.80762 0.79362 1.90862 1.28157 1.65754 1.52734 1.19559 0.96257 1.00553 0.99286 1.21128 0.98629 0.92929 0.93795 1.21277 0.94637 0.97883 1.00726 1.21485 0.96757 0.97679 0.93254 1.22029 1.00547 0.94641 0.97076 1.18762 0.93800 0.95087 0.92459 1.20645 1.00464 0.88925 1.04406 0.92678 0.95372 0.95349 0.92931 0.92964 0.84594 0.85302 0.85292 0.82999 0.74255 0.84241 0.84817 0.84907 0.82749 0.84802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.53 -14.03 9.11 -34.44 -0.31 -14.35 16 8 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 9 C 0.03 0.63 5.34 -27.89 -0.15 0.48 16 10 C 0.06 1.24 4.68 37.16 0.17 1.41 16 11 O -0.31 -5.67 10.13 -19.45 -0.20 -5.86 16 12 C 0.14 2.05 6.66 -39.29 -0.26 1.79 16 13 C -0.19 -2.31 9.04 -39.28 -0.36 -2.66 16 14 C -0.08 -0.78 10.02 -39.68 -0.40 -1.18 16 15 C -0.14 -1.21 9.47 -39.03 -0.37 -1.58 16 16 C -0.06 -0.63 3.37 -105.11 -0.35 -0.98 16 17 C 0.05 0.46 9.16 -36.76 -0.34 0.12 16 18 C -0.17 -1.82 5.60 -102.90 -0.58 -2.39 16 19 C 0.57 6.39 7.88 -12.76 -0.10 6.29 16 20 O -0.50 -6.48 17.30 5.23 0.09 -6.39 16 21 N -0.67 -6.88 5.10 -13.68 -0.07 -6.95 16 22 C 0.57 6.75 7.85 -12.94 -0.10 6.65 16 23 O -0.50 -6.91 17.19 5.27 0.09 -6.82 16 24 C -0.15 -1.75 5.89 -104.86 -0.62 -2.37 16 25 C -0.05 -0.48 9.62 -39.25 -0.38 -0.86 16 26 C -0.13 -1.20 10.01 -39.54 -0.40 -1.60 16 27 C -0.07 -0.74 10.03 -39.49 -0.40 -1.13 16 28 C -0.13 -1.34 7.49 -39.37 -0.29 -1.64 16 29 C 0.00 0.00 5.44 -104.67 -0.57 -0.57 16 30 C -0.13 -1.58 6.35 -38.89 -0.25 -1.83 16 31 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.94 7.65 -51.93 -0.40 0.54 16 35 H 0.05 0.96 7.66 -51.93 -0.40 0.56 16 36 H 0.14 1.64 6.27 -52.49 -0.33 1.32 16 37 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.15 1.11 7.88 -52.48 -0.41 0.69 16 40 H 0.42 3.59 8.79 -40.82 -0.36 3.23 16 41 H 0.14 1.32 7.71 -52.49 -0.40 0.91 16 42 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 43 H 0.13 1.15 8.06 -52.48 -0.42 0.72 16 44 H 0.16 1.62 3.66 -52.48 -0.19 1.43 16 45 H 0.13 1.79 7.60 -52.49 -0.40 1.39 16 LS Contribution 384.10 15.07 5.79 5.79 Total: -1.00 -31.72 384.10 -9.69 -41.41 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -4.97 Total: 3.05 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -6.14 Total: -14.82 kcal Atomic # 7 Polarization: -32.55 SS G_CDS: 0.67 Total: -31.88 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.02 Total: -19.07 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.72 -9.69 -41.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096189872.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.144 kcal (2) G-P(sol) polarization free energy of solvation -31.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds