Wall clock time and date at job start Tue Mar 31 2020 06:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33393 * 125.20381 * 2 1 4 4 C 1.38416 * 114.92414 * 179.97438 * 3 2 1 5 5 C 1.33392 * 114.91949 * 0.02562 * 4 3 2 6 6 C 1.50702 * 125.20212 * 180.02562 * 5 4 3 7 7 N 1.46908 * 109.46808 * 90.00352 * 6 5 4 8 8 C 1.46840 * 111.00092 * 45.73443 * 7 6 5 9 9 C 1.53037 * 109.52386 * 185.79926 * 8 7 6 10 10 C 1.53155 * 109.23997 * 300.76909 * 9 8 7 11 11 C 1.53159 * 109.08237 * 57.82118 * 10 9 8 12 12 C 1.46836 * 110.99828 * 169.99963 * 7 6 5 13 13 C 1.50293 * 109.54113 * 297.92725 * 10 9 8 14 14 O 1.21298 * 118.61942 * 42.57729 * 13 10 9 15 15 N 1.33697 * 122.76342 * 222.56249 * 13 10 9 16 16 C 1.37099 * 118.53784 * 181.69300 * 15 13 10 17 17 H 1.08002 * 119.99787 * 21.33192 * 16 15 13 18 18 C 1.38951 * 119.99979 * 201.34230 * 16 15 13 19 19 N 1.31409 * 120.00314 * 16.33876 * 18 16 15 20 20 Si 1.86803 * 119.99634 * 196.34974 * 18 16 15 21 21 H 1.48495 * 109.47618 * 59.99416 * 20 18 16 22 22 H 1.48498 * 109.47094 * 179.97438 * 20 18 16 23 23 H 1.48508 * 109.46642 * 299.99100 * 20 18 16 24 24 C 1.46013 * 122.93563 * 1.71144 * 15 13 10 25 25 C 1.52989 * 110.03161 * 341.84734 * 24 15 13 26 26 N 1.46915 * 109.36510 * 177.37840 * 10 9 8 27 27 C 1.46910 * 110.99574 * 47.28768 * 26 10 9 28 28 S 1.75878 * 125.20370 * 179.69540 * 2 1 3 29 29 H 1.09004 * 109.47175 * 89.99684 * 1 2 3 30 30 H 1.08998 * 109.47484 * 330.00026 * 1 2 3 31 31 H 1.08996 * 109.47209 * 209.99797 * 1 2 3 32 32 H 1.08002 * 122.53879 * 359.95526 * 3 2 1 33 33 H 1.07999 * 122.54333 * 180.02562 * 4 3 2 34 34 H 1.09003 * 109.47134 * 209.99706 * 6 5 4 35 35 H 1.09000 * 109.47170 * 330.00380 * 6 5 4 36 36 H 1.08998 * 109.46427 * 305.82032 * 8 7 6 37 37 H 1.09003 * 109.45717 * 65.78304 * 8 7 6 38 38 H 1.08996 * 109.50611 * 180.84201 * 9 8 7 39 39 H 1.08997 * 109.50974 * 60.70158 * 9 8 7 40 40 H 1.09009 * 109.50755 * 182.25494 * 11 10 9 41 41 H 1.09000 * 109.50851 * 62.11572 * 11 10 9 42 42 H 1.09000 * 109.46373 * 294.21579 * 12 7 6 43 43 H 1.09000 * 109.46184 * 54.18398 * 12 7 6 44 44 H 0.97001 * 119.99974 * 180.02562 * 19 18 16 45 45 H 1.09000 * 109.37931 * 102.01504 * 24 15 13 46 46 H 1.08994 * 109.38159 * 221.67679 * 24 15 13 47 47 H 1.09001 * 109.59127 * 170.04886 * 25 24 15 48 48 H 1.08998 * 109.59233 * 290.49689 * 25 24 15 49 49 H 1.09003 * 109.46908 * 60.00048 * 27 26 10 50 50 H 1.08996 * 109.46971 * 179.97438 * 27 26 10 51 51 H 1.08996 * 109.47148 * 300.00410 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8430 0.0006 5 6 3.9750 -0.4477 0.0005 6 6 5.3860 -0.9770 0.0016 7 7 5.8432 -1.1494 1.3870 8 6 4.8172 -1.8136 2.2009 9 6 5.2667 -1.8464 3.6634 10 6 6.5945 -2.6027 3.7665 11 6 7.6325 -1.9158 2.8740 12 6 7.1155 -1.8810 1.4340 13 6 6.4012 -4.0221 3.3120 14 8 5.7320 -4.2291 2.3217 15 7 6.9359 -5.0663 3.9533 16 6 6.7330 -6.3224 3.4427 17 1 6.4691 -6.4465 2.4027 18 6 6.8666 -7.4358 4.2631 19 7 6.8668 -7.2932 5.5695 20 14 7.0464 -9.1354 3.5091 21 1 8.2600 -9.1720 2.6542 22 1 7.1723 -10.1458 4.5901 23 1 5.8499 -9.4397 2.6836 24 6 7.7261 -4.9289 5.1734 25 6 8.2100 -3.4854 5.3245 26 7 7.0602 -2.5817 5.1597 27 6 5.9745 -2.9381 6.0830 28 16 2.5209 -1.4371 0.0076 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 0.8899 0.5138 31 1 -0.3633 -0.8900 0.5138 32 1 1.8669 2.0895 -0.0007 33 1 4.3720 1.6351 0.0010 34 1 5.4141 -1.9378 -0.5125 35 1 6.0393 -0.2711 -0.5114 36 1 3.8790 -1.2646 2.1215 37 1 4.6729 -2.8328 1.8423 38 1 4.5118 -2.3527 4.2649 39 1 5.3990 -0.8273 4.0265 40 1 8.5694 -2.4719 2.9110 41 1 7.7986 -0.8977 3.2260 42 1 6.9619 -2.8999 1.0786 43 1 7.8458 -1.3808 0.7980 44 1 6.9605 -8.0705 6.1422 45 1 7.1127 -5.1965 6.0337 46 1 8.5870 -5.5955 5.1237 47 1 8.6445 -3.3473 6.3146 48 1 8.9576 -3.2687 4.5614 49 1 5.6136 -3.9400 5.8501 50 1 6.3464 -2.9153 7.1073 51 1 5.1579 -2.2240 5.9766 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096230114.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:20 Heat of formation + Delta-G solvation = 44.137306 kcal Electronic energy + Delta-G solvation = -32673.704211 eV Core-core repulsion = 28700.842047 eV Total energy + Delta-G solvation = -3972.862164 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.172 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.69028 -38.40421 -37.26004 -36.27035 -34.85389 -32.81622 -31.64110 -30.95553 -30.50794 -28.58126 -27.86645 -25.74711 -25.28663 -24.08785 -23.16002 -22.17087 -21.95618 -21.42992 -20.33642 -18.54012 -17.74371 -16.95469 -16.66541 -16.26880 -15.68265 -15.26043 -14.98023 -14.85936 -14.47751 -14.40163 -14.22969 -13.94051 -13.85391 -13.73014 -13.17698 -13.13969 -12.80538 -12.54742 -12.46366 -12.30106 -12.03427 -11.91502 -11.74176 -11.64596 -11.52975 -11.33250 -11.27241 -11.18055 -10.99128 -10.92423 -10.61512 -10.57224 -10.55106 -10.40474 -10.25150 -10.17288 -9.79222 -9.09476 -8.82660 -8.45051 -8.30008 -7.82366 -7.71336 -7.30976 -6.31878 -3.94463 1.02764 1.67151 2.09456 2.78482 3.13503 3.20038 3.23713 3.83416 4.03146 4.30454 4.39569 4.78498 4.83506 4.86724 5.02370 5.16513 5.21204 5.27234 5.34069 5.37157 5.46472 5.53749 5.63341 5.70713 5.74079 5.80305 5.83497 5.83913 5.90425 5.95830 6.00763 6.03994 6.15103 6.21201 6.22139 6.28174 6.34357 6.37103 6.38792 6.42177 6.52138 6.58830 6.61596 6.75019 6.90670 7.20005 7.41128 7.44121 7.46295 7.52958 7.53254 8.12662 8.42382 9.15139 9.42431 9.93492 10.64448 Molecular weight = 363.17amu Principal moments of inertia in cm(-1) A = 0.012902 B = 0.003159 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.691586 B = 8861.823369 C = 9776.584382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.190 4.190 3 C -0.142 4.142 4 C -0.125 4.125 5 C -0.165 4.165 6 C 0.125 3.875 7 N -0.526 5.526 8 C 0.027 3.973 9 C -0.083 4.083 10 C 0.105 3.895 11 C -0.087 4.087 12 C 0.052 3.948 13 C 0.428 3.572 14 O -0.586 6.586 15 N -0.432 5.432 16 C -0.311 4.311 17 H 0.099 0.901 18 C 0.033 3.967 19 N -0.880 5.880 20 Si 0.924 3.076 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.099 3.901 25 C 0.023 3.977 26 N -0.525 5.525 27 C 0.013 3.987 28 S 0.108 5.892 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.044 0.956 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.057 0.943 43 H 0.066 0.934 44 H 0.268 0.732 45 H 0.092 0.908 46 H 0.065 0.935 47 H 0.083 0.917 48 H 0.072 0.928 49 H 0.044 0.956 50 H 0.064 0.936 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.079 14.230 -5.241 15.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.308 4.308 3 C -0.172 4.172 4 C -0.155 4.155 5 C -0.283 4.283 6 C -0.004 4.004 7 N -0.251 5.251 8 C -0.101 4.101 9 C -0.122 4.122 10 C 0.011 3.989 11 C -0.125 4.125 12 C -0.076 4.076 13 C 0.215 3.785 14 O -0.471 6.471 15 N -0.150 5.150 16 C -0.439 4.439 17 H 0.117 0.883 18 C -0.170 4.170 19 N -0.520 5.520 20 Si 0.751 3.249 21 H -0.200 1.200 22 H -0.209 1.209 23 H -0.198 1.198 24 C -0.026 4.026 25 C -0.105 4.105 26 N -0.249 5.249 27 C -0.135 4.135 28 S 0.373 5.627 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.152 0.848 33 H 0.156 0.844 34 H 0.062 0.938 35 H 0.106 0.894 36 H 0.083 0.917 37 H 0.112 0.888 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.097 0.903 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.110 0.890 46 H 0.084 0.916 47 H 0.101 0.899 48 H 0.090 0.910 49 H 0.063 0.937 50 H 0.083 0.917 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.410 13.360 -5.186 14.994 hybrid contribution 0.148 -1.076 -0.479 1.187 sum -4.262 12.284 -5.665 14.183 Atomic orbital electron populations 1.20302 0.88177 1.03013 1.02437 1.24541 0.99892 0.96343 1.10023 1.20018 0.92992 0.98920 1.05314 1.20008 0.95931 0.95865 1.03740 1.24359 0.98275 0.96433 1.09200 1.20541 0.89022 0.99542 0.91288 1.62237 1.03971 1.50624 1.08247 1.22785 0.93467 1.01051 0.92799 1.21442 0.94528 0.99564 0.96661 1.21171 0.96245 0.92995 0.88447 1.21442 0.96736 1.00869 0.93486 1.22122 0.90669 0.97940 0.96858 1.20243 0.83809 0.86977 0.87486 1.90317 1.43109 1.84941 1.28770 1.43251 1.43157 1.05909 1.22665 1.19647 1.46784 0.81170 0.96323 0.88305 1.25300 0.96772 0.99984 0.94980 1.69964 1.48153 1.31128 1.02709 0.86025 0.79149 0.81221 0.78491 1.19973 1.20935 1.19821 1.21974 0.96728 0.93908 0.89976 1.22806 0.93725 0.91697 1.02278 1.62734 1.07602 1.50688 1.03859 1.22491 0.94350 1.00516 0.96121 1.84675 0.96421 1.08840 1.72809 0.91019 0.90777 0.91380 0.84809 0.84408 0.93785 0.89400 0.91747 0.88795 0.91816 0.90997 0.91794 0.90312 0.92499 0.91546 0.92192 0.89031 0.91630 0.89873 0.90970 0.93739 0.91717 0.91565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 10.38 36.00 0.37 -0.33 16 2 C -0.19 -2.23 6.51 -36.00 -0.23 -2.46 16 3 C -0.14 -1.61 10.05 -41.21 -0.41 -2.02 16 4 C -0.12 -1.53 10.05 -41.21 -0.41 -1.94 16 5 C -0.17 -2.27 4.45 -36.00 -0.16 -2.43 16 6 C 0.13 1.79 5.77 -4.97 -0.03 1.77 16 7 N -0.53 -8.50 4.80 -236.12 -1.13 -9.63 16 8 C 0.03 0.48 4.42 -3.84 -0.02 0.46 16 9 C -0.08 -1.51 4.04 -26.63 -0.11 -1.61 16 10 C 0.10 1.99 0.44 -132.78 -0.06 1.93 16 11 C -0.09 -1.48 4.83 -26.63 -0.13 -1.60 16 12 C 0.05 0.88 5.17 -3.84 -0.02 0.86 16 13 C 0.43 10.07 5.37 -11.66 -0.06 10.01 16 14 O -0.59 -15.23 11.01 5.54 0.06 -15.17 16 15 N -0.43 -10.81 2.79 -115.63 -0.32 -11.13 16 16 C -0.31 -8.56 9.13 -14.93 -0.14 -8.69 16 17 H 0.10 2.87 7.25 -52.49 -0.38 2.49 16 18 C 0.03 0.86 5.04 -17.47 -0.09 0.77 16 19 N -0.88 -23.03 10.57 55.50 0.59 -22.44 16 20 Si 0.92 20.67 29.58 -169.99 -5.03 15.64 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 C 0.10 2.18 3.98 -4.31 -0.02 2.16 16 25 C 0.02 0.42 5.96 -3.68 -0.02 0.39 16 26 N -0.53 -9.34 4.89 -228.31 -1.12 -10.46 16 27 C 0.01 0.23 8.08 60.07 0.49 0.72 16 28 S 0.11 1.50 21.68 -107.50 -2.33 -0.84 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 35 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.06 1.12 5.51 -51.93 -0.29 0.83 16 37 H 0.09 2.04 5.03 -51.93 -0.26 1.78 16 38 H 0.06 1.19 6.49 -51.93 -0.34 0.86 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.06 1.09 6.57 -51.92 -0.34 0.75 16 41 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.06 1.15 6.20 -51.93 -0.32 0.82 16 43 H 0.07 0.95 8.12 -51.93 -0.42 0.53 16 44 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 45 H 0.09 2.17 5.61 -51.93 -0.29 1.88 16 46 H 0.07 1.52 7.63 -51.93 -0.40 1.12 16 47 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 48 H 0.07 1.24 6.28 -51.93 -0.33 0.92 16 49 H 0.04 0.93 5.96 -51.93 -0.31 0.62 16 50 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 51 H 0.07 1.06 6.25 -51.93 -0.32 0.74 16 LS Contribution 384.84 15.07 5.80 5.80 Total: -1.00 -29.29 384.84 -12.31 -41.60 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -7.78 Total: 8.66 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -1.05 Total: -2.03 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: -1.98 Total: -53.66 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: 0.06 Total: -15.17 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.33 Total: -0.84 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.29 -12.31 -41.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096230114.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.741 kcal (2) G-P(sol) polarization free energy of solvation -29.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds