Wall clock time and date at job start Tue Mar 31 2020 06:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35970 * 116.99802 * 2 1 4 4 C 1.38293 * 120.11574 * 0.02562 * 3 2 1 5 5 C 1.38777 * 120.67851 * 180.02562 * 4 3 2 6 6 C 1.36625 * 120.49555 * 359.96671 * 5 4 3 7 7 C 1.39809 * 119.80805 * 0.03015 * 6 5 4 8 8 C 1.46200 * 134.14837 * 179.97438 * 7 6 5 9 9 C 1.35997 * 106.08211 * 180.02562 * 8 7 6 10 10 C 1.46998 * 125.15237 * 179.97438 * 9 8 7 11 11 O 1.21852 * 119.99849 * 359.97438 * 10 9 8 12 12 C 1.46378 * 120.00147 * 180.02562 * 10 9 8 13 13 C 1.34988 * 120.00127 * 173.89740 * 12 10 9 14 14 C 1.47138 * 119.99818 * 347.13252 * 13 12 10 15 15 C 1.39959 * 120.14047 * 136.45917 * 14 13 12 16 16 C 1.37909 * 119.95851 * 179.97438 * 15 14 13 17 17 C 1.38299 * 120.25378 * 0.02562 * 16 15 14 18 18 C 1.39011 * 120.28714 * 359.97438 * 17 16 15 19 19 O 1.35761 * 119.98884 * 180.02562 * 18 17 16 20 20 C 1.34830 * 116.99561 * 356.21573 * 19 18 17 21 21 H 1.08003 * 120.00122 * 5.01807 * 20 19 18 22 22 C 1.38658 * 120.00076 * 185.02071 * 20 19 18 23 23 N 1.31556 * 120.00078 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99880 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46912 * 90.00182 * 24 22 20 26 26 H 1.48500 * 109.47267 * 210.00395 * 24 22 20 27 27 H 1.48503 * 109.46868 * 330.00450 * 24 22 20 28 28 C 1.38564 * 120.03280 * 359.74751 * 18 17 16 29 29 O 1.34889 * 109.69491 * 0.22908 * 9 8 7 30 30 C 1.34814 * 110.84663 * 359.61136 * 29 9 8 31 31 H 1.09007 * 109.47035 * 59.99870 * 1 2 3 32 32 H 1.09003 * 109.47082 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47144 * 300.00242 * 1 2 3 34 34 H 1.07999 * 119.65926 * 0.04069 * 4 3 2 35 35 H 1.08001 * 119.74961 * 180.02562 * 5 4 3 36 36 H 1.08003 * 120.09184 * 180.02562 * 6 5 4 37 37 H 1.07998 * 126.95899 * 0.02562 * 8 7 6 38 38 H 1.07999 * 119.99673 * 353.61986 * 12 10 9 39 39 H 1.07996 * 119.99573 * 167.13052 * 13 12 10 40 40 H 1.07993 * 120.01814 * 359.95494 * 15 14 13 41 41 H 1.08006 * 119.87382 * 180.02562 * 16 15 14 42 42 H 1.08001 * 119.85690 * 180.02562 * 17 16 15 43 43 H 0.97000 * 120.00118 * 179.97438 * 23 22 20 44 44 H 1.07997 * 120.12717 * 180.27809 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2954 2.3728 0.0005 5 6 1.9132 3.6155 0.0000 6 6 3.2760 3.7122 -0.0004 7 6 4.0552 2.5514 -0.0009 8 6 5.4937 2.2905 -0.0018 9 6 5.6312 0.9375 -0.0024 10 6 6.9125 0.2170 -0.0040 11 8 7.9607 0.8382 -0.0054 12 6 6.9291 -1.2467 -0.0052 13 6 8.0990 -1.9083 -0.1309 14 6 9.3115 -1.1862 -0.5472 15 6 10.5287 -1.4242 0.1012 16 6 11.6630 -0.7457 -0.2925 17 6 11.6030 0.1709 -1.3264 18 6 10.3995 0.4153 -1.9777 19 8 10.3476 1.3159 -2.9922 20 6 11.4797 1.9950 -3.2662 21 1 12.3938 1.7541 -2.7438 22 6 11.4705 3.0028 -4.2185 23 7 12.5752 3.6651 -4.4862 24 14 9.8896 3.4191 -5.1225 25 1 9.1496 4.4638 -4.3701 26 1 10.2142 3.9236 -6.4809 27 1 9.0482 2.2006 -5.2350 28 6 9.2538 -0.2640 -1.5957 29 8 4.4137 0.3568 -0.0071 30 6 3.4383 1.2874 -0.0011 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 0.2171 2.3120 0.0016 35 1 1.3122 4.5128 0.0009 36 1 3.7500 4.6827 -0.0004 37 1 6.2866 3.0237 -0.0020 38 1 6.0059 -1.7973 0.0991 39 1 8.1449 -2.9677 0.0742 40 1 10.5796 -2.1386 0.9095 41 1 12.6017 -0.9307 0.2086 42 1 12.4953 0.6984 -1.6297 43 1 12.5688 4.3698 -5.1527 44 1 8.3189 -0.0785 -2.1036 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096316211.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:22 Heat of formation + Delta-G solvation = -1.055385 kcal Electronic energy + Delta-G solvation = -30928.518053 eV Core-core repulsion = 26552.407728 eV Total energy + Delta-G solvation = -4376.110325 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.119 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.64459 -39.98188 -39.58200 -38.65719 -37.21888 -36.59513 -33.46616 -32.56313 -32.33072 -30.83517 -29.93314 -29.45064 -28.83298 -27.70844 -25.50042 -25.02800 -23.09737 -22.79582 -21.71240 -21.29231 -20.85706 -19.28809 -18.32835 -17.85504 -17.57793 -17.44213 -16.70739 -16.56991 -15.82452 -15.78671 -15.43117 -15.26685 -14.93735 -14.66781 -14.31623 -14.10043 -13.80336 -13.67222 -13.57830 -13.42376 -13.17258 -13.07421 -12.65019 -12.62428 -12.41870 -12.26969 -12.10621 -11.78946 -11.68250 -11.62649 -11.45648 -10.93049 -10.88470 -10.72370 -10.15524 -10.02881 -9.92273 -9.60646 -9.34703 -8.87314 -8.82045 -8.14639 -7.75201 -7.33008 -6.37118 -4.03127 0.16603 0.92150 1.05076 1.80414 2.27744 2.35810 2.44391 2.81547 3.24778 3.27911 3.30564 3.39066 3.44058 3.80896 4.27992 4.42657 4.47181 4.52901 4.61921 4.68506 4.74615 4.75790 4.82414 4.97009 5.07452 5.09503 5.11251 5.14424 5.27222 5.39637 5.49147 5.59358 5.75886 5.76250 5.80787 6.00857 6.05145 6.13074 6.15261 6.19886 6.27275 6.30190 6.54529 6.64035 6.78407 7.03460 7.06489 7.16716 7.31759 7.55465 7.61114 7.82920 8.07743 8.98708 9.62086 10.70767 Molecular weight = 364.12amu Principal moments of inertia in cm(-1) A = 0.009772 B = 0.002747 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.599892 B =10191.581690 C =12293.170038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.141 3.859 4 C -0.186 4.186 5 C -0.100 4.100 6 C -0.098 4.098 7 C -0.103 4.103 8 C -0.130 4.130 9 C -0.025 4.025 10 C 0.444 3.556 11 O -0.391 6.391 12 C -0.247 4.247 13 C 0.012 3.988 14 C -0.055 4.055 15 C -0.173 4.173 16 C -0.086 4.086 17 C -0.203 4.203 18 C 0.155 3.845 19 O -0.219 6.219 20 C -0.387 4.387 21 H 0.106 0.894 22 C 0.064 3.936 23 N -0.882 5.882 24 Si 0.903 3.097 25 H -0.273 1.273 26 H -0.282 1.282 27 H -0.260 1.260 28 C -0.128 4.128 29 O -0.167 6.167 30 C 0.041 3.959 31 H 0.057 0.943 32 H 0.102 0.898 33 H 0.057 0.943 34 H 0.140 0.860 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.173 0.827 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.133 0.867 43 H 0.279 0.721 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.416 -6.433 11.237 26.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C 0.095 3.905 4 C -0.205 4.205 5 C -0.118 4.118 6 C -0.116 4.116 7 C -0.104 4.104 8 C -0.150 4.150 9 C -0.073 4.073 10 C 0.322 3.678 11 O -0.265 6.265 12 C -0.265 4.265 13 C -0.007 4.007 14 C -0.055 4.055 15 C -0.192 4.192 16 C -0.105 4.105 17 C -0.222 4.222 18 C 0.103 3.897 19 O -0.125 6.125 20 C -0.462 4.462 21 H 0.123 0.877 22 C -0.139 4.139 23 N -0.520 5.520 24 Si 0.728 3.272 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.184 1.184 28 C -0.147 4.147 29 O -0.068 6.068 30 C -0.007 4.007 31 H 0.076 0.924 32 H 0.120 0.880 33 H 0.076 0.924 34 H 0.158 0.842 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.191 0.809 38 H 0.157 0.843 39 H 0.154 0.846 40 H 0.128 0.872 41 H 0.130 0.870 42 H 0.151 0.849 43 H 0.089 0.911 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -22.899 -6.337 10.936 26.155 hybrid contribution -0.869 0.605 -0.407 1.135 sum -23.768 -5.732 10.529 26.620 Atomic orbital electron populations 1.23113 0.77945 1.04305 1.01472 1.86171 1.21651 1.25990 1.88755 1.17703 0.86562 0.85658 1.00541 1.20984 0.99924 0.91060 1.08554 1.20534 0.94211 0.97067 0.99961 1.20322 0.93117 0.97035 1.01129 1.19770 0.92943 0.93004 1.04693 1.22972 0.94620 0.95171 1.02216 1.22997 0.85331 0.92675 1.06316 1.19258 0.84231 0.89592 0.74769 1.91001 1.30520 1.70779 1.34234 1.23236 0.99249 0.93754 1.10308 1.22662 0.91253 0.99192 0.87551 1.18438 0.92628 0.97501 0.96949 1.20696 0.92030 1.03921 1.02582 1.20671 0.97448 0.95904 0.96436 1.21422 0.98732 1.02453 0.99638 1.18861 0.93004 0.90027 0.87783 1.83586 1.37578 1.47196 1.44116 1.20750 0.87023 1.15207 1.23245 0.87664 1.24431 0.98226 0.94669 0.96597 1.69646 1.26714 1.22522 1.33115 0.86220 0.82736 0.79636 0.78569 1.19877 1.20803 1.18422 1.20084 0.96264 0.98673 0.99705 1.84085 1.12671 1.34441 1.75564 1.18872 0.87607 0.87351 1.06919 0.92398 0.87951 0.92427 0.84208 0.84848 0.84839 0.80916 0.84333 0.84576 0.87203 0.87001 0.84897 0.91137 0.87299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.35 10.50 -19.65 -0.21 -3.56 16 3 C 0.14 1.63 6.70 -39.13 -0.26 1.36 16 4 C -0.19 -1.63 9.03 -39.36 -0.36 -1.99 16 5 C -0.10 -0.85 9.97 -39.96 -0.40 -1.25 16 6 C -0.10 -1.03 10.06 -39.58 -0.40 -1.43 16 7 C -0.10 -1.37 6.38 -105.21 -0.67 -2.04 16 8 C -0.13 -1.90 10.81 -37.19 -0.40 -2.30 16 9 C -0.02 -0.38 7.00 -36.84 -0.26 -0.63 16 10 C 0.44 7.15 6.14 -32.76 -0.20 6.94 16 11 O -0.39 -7.59 12.81 5.05 0.06 -7.53 16 12 C -0.25 -3.30 9.69 -37.46 -0.36 -3.67 16 13 C 0.01 0.16 9.80 -37.13 -0.36 -0.21 16 14 C -0.05 -0.96 4.49 -105.08 -0.47 -1.44 16 15 C -0.17 -2.93 9.79 -39.06 -0.38 -3.32 16 16 C -0.09 -1.59 10.02 -39.68 -0.40 -1.99 16 17 C -0.20 -4.51 9.17 -39.27 -0.36 -4.87 16 18 C 0.15 3.72 6.64 -39.17 -0.26 3.46 16 19 O -0.22 -6.00 8.58 0.02 0.00 -6.00 16 20 C -0.39 -11.16 9.94 30.89 0.31 -10.85 16 21 H 0.11 3.08 5.42 -52.48 -0.28 2.80 16 22 C 0.06 1.83 5.49 -17.51 -0.10 1.73 16 23 N -0.88 -25.92 13.96 55.48 0.77 -25.15 16 24 Si 0.90 22.36 28.62 -169.99 -4.86 17.50 16 25 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.26 -6.50 7.11 56.52 0.40 -6.10 16 28 C -0.13 -2.69 6.62 -38.90 -0.26 -2.95 16 29 O -0.17 -2.48 10.37 2.66 0.03 -2.45 16 30 C 0.04 0.57 7.35 -38.24 -0.28 0.29 16 31 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 32 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 34 H 0.14 0.79 6.26 -52.49 -0.33 0.46 16 35 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 36 H 0.13 1.15 8.06 -52.48 -0.42 0.72 16 37 H 0.17 2.39 8.06 -52.49 -0.42 1.97 16 38 H 0.14 1.50 7.98 -52.49 -0.42 1.09 16 39 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 41 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 42 H 0.13 3.07 5.60 -52.49 -0.29 2.78 16 43 H 0.28 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.11 2.27 7.13 -52.49 -0.37 1.90 16 LS Contribution 383.59 15.07 5.78 5.78 Total: -1.00 -33.95 383.59 -7.89 -41.84 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -4.59 Total: 3.57 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: -4.88 Total: -24.00 kcal Atomic # 7 Polarization: -25.92 SS G_CDS: 0.77 Total: -25.15 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.11 Total: -19.54 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.86 Total: 17.50 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.95 -7.89 -41.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096316211.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.786 kcal (2) G-P(sol) polarization free energy of solvation -33.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds