Wall clock time and date at job start Tue Mar 31 2020 06:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35970 * 116.99802 * 2 1 4 4 C 1.38293 * 120.11574 * 0.02562 * 3 2 1 5 5 C 1.38777 * 120.67851 * 180.02562 * 4 3 2 6 6 C 1.36625 * 120.49555 * 359.96671 * 5 4 3 7 7 C 1.39809 * 119.80805 * 0.03015 * 6 5 4 8 8 C 1.46200 * 134.14837 * 179.97438 * 7 6 5 9 9 C 1.35997 * 106.08211 * 180.02562 * 8 7 6 10 10 C 1.46998 * 125.15237 * 179.97438 * 9 8 7 11 11 O 1.21852 * 119.99849 * 359.97438 * 10 9 8 12 12 C 1.46378 * 120.00147 * 180.02562 * 10 9 8 13 13 C 1.34988 * 120.00127 * 173.89740 * 12 10 9 14 14 C 1.47138 * 119.99818 * 347.13252 * 13 12 10 15 15 C 1.39959 * 120.14047 * 136.45917 * 14 13 12 16 16 C 1.37909 * 119.95851 * 179.97438 * 15 14 13 17 17 C 1.38299 * 120.25378 * 0.02562 * 16 15 14 18 18 C 1.39011 * 120.28714 * 359.97438 * 17 16 15 19 19 O 1.35761 * 119.98884 * 180.02562 * 18 17 16 20 20 C 1.34830 * 116.99561 * 356.21573 * 19 18 17 21 21 H 1.08003 * 120.00122 * 5.01807 * 20 19 18 22 22 C 1.38658 * 120.00076 * 185.02071 * 20 19 18 23 23 N 1.31556 * 120.00078 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99880 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46912 * 90.00182 * 24 22 20 26 26 H 1.48500 * 109.47267 * 210.00395 * 24 22 20 27 27 H 1.48503 * 109.46868 * 330.00450 * 24 22 20 28 28 C 1.38564 * 120.03280 * 359.74751 * 18 17 16 29 29 O 1.34889 * 109.69491 * 0.22908 * 9 8 7 30 30 C 1.34814 * 110.84663 * 359.61136 * 29 9 8 31 31 H 1.09007 * 109.47035 * 59.99870 * 1 2 3 32 32 H 1.09003 * 109.47082 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47144 * 300.00242 * 1 2 3 34 34 H 1.07999 * 119.65926 * 0.04069 * 4 3 2 35 35 H 1.08001 * 119.74961 * 180.02562 * 5 4 3 36 36 H 1.08003 * 120.09184 * 180.02562 * 6 5 4 37 37 H 1.07998 * 126.95899 * 0.02562 * 8 7 6 38 38 H 1.07999 * 119.99673 * 353.61986 * 12 10 9 39 39 H 1.07996 * 119.99573 * 167.13052 * 13 12 10 40 40 H 1.07993 * 120.01814 * 359.95494 * 15 14 13 41 41 H 1.08006 * 119.87382 * 180.02562 * 16 15 14 42 42 H 1.08001 * 119.85690 * 180.02562 * 17 16 15 43 43 H 0.97000 * 120.00118 * 179.97438 * 23 22 20 44 44 H 1.07997 * 120.12717 * 180.27809 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2954 2.3728 0.0005 5 6 1.9132 3.6155 0.0000 6 6 3.2760 3.7122 -0.0004 7 6 4.0552 2.5514 -0.0009 8 6 5.4937 2.2905 -0.0018 9 6 5.6312 0.9375 -0.0024 10 6 6.9125 0.2170 -0.0040 11 8 7.9607 0.8382 -0.0054 12 6 6.9291 -1.2467 -0.0052 13 6 8.0990 -1.9083 -0.1309 14 6 9.3115 -1.1862 -0.5472 15 6 10.5287 -1.4242 0.1012 16 6 11.6630 -0.7457 -0.2925 17 6 11.6030 0.1709 -1.3264 18 6 10.3995 0.4153 -1.9777 19 8 10.3476 1.3159 -2.9922 20 6 11.4797 1.9950 -3.2662 21 1 12.3938 1.7541 -2.7438 22 6 11.4705 3.0028 -4.2185 23 7 12.5752 3.6651 -4.4862 24 14 9.8896 3.4191 -5.1225 25 1 9.1496 4.4638 -4.3701 26 1 10.2142 3.9236 -6.4809 27 1 9.0482 2.2006 -5.2350 28 6 9.2538 -0.2640 -1.5957 29 8 4.4137 0.3568 -0.0071 30 6 3.4383 1.2874 -0.0011 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 0.2171 2.3120 0.0016 35 1 1.3122 4.5128 0.0009 36 1 3.7500 4.6827 -0.0004 37 1 6.2866 3.0237 -0.0020 38 1 6.0059 -1.7973 0.0991 39 1 8.1449 -2.9677 0.0742 40 1 10.5796 -2.1386 0.9095 41 1 12.6017 -0.9307 0.2086 42 1 12.4953 0.6984 -1.6297 43 1 12.5688 4.3698 -5.1527 44 1 8.3189 -0.0785 -2.1036 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096316211.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:21 Heat of formation + Delta-G solvation = -21.063278 kcal Electronic energy + Delta-G solvation = -30929.385661 eV Core-core repulsion = 26552.407728 eV Total energy + Delta-G solvation = -4376.977932 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.119 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.62909 -41.24344 -40.60405 -40.17741 -38.26719 -37.99708 -34.79874 -34.41924 -33.55885 -31.80402 -31.21898 -30.74179 -30.10907 -28.28979 -27.27114 -26.42195 -24.18708 -23.88897 -22.93848 -22.61259 -22.11270 -20.57546 -19.59918 -19.36231 -18.97075 -18.37682 -17.93195 -17.67344 -16.97039 -16.73042 -16.49556 -16.45877 -16.28203 -15.99178 -15.85123 -15.66346 -15.18326 -15.08097 -14.66328 -14.58294 -14.41441 -14.29613 -14.14845 -14.01841 -13.71793 -13.35518 -13.28323 -13.13220 -12.70276 -12.54972 -12.50202 -12.45442 -12.27381 -12.26863 -11.99272 -11.37081 -11.21589 -10.98141 -10.97063 -10.77682 -9.79247 -9.25175 -9.05289 -8.96826 -8.52236 -6.23511 -0.93879 -0.15902 0.21720 0.60590 0.71986 1.11592 1.24478 1.29492 1.34533 1.45643 2.12720 2.16600 2.24394 2.56164 2.76089 2.77848 3.04183 3.15570 3.54984 3.64699 3.79377 3.83050 3.90988 4.04615 4.14923 4.22407 4.24546 4.30891 4.38957 4.41940 4.43088 4.48708 4.51880 4.64731 4.75648 4.77626 4.87263 4.99184 5.04779 5.17681 5.20277 5.25759 5.36394 5.37979 5.49718 5.61375 5.68157 5.69219 5.76190 5.89445 6.20772 6.27812 6.38998 6.82748 7.59424 8.59813 Molecular weight = 364.12amu Principal moments of inertia in cm(-1) A = 0.009772 B = 0.002747 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.599892 B =10191.581690 C =12293.170038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.336 6.336 3 C 0.127 3.873 4 C -0.170 4.170 5 C -0.087 4.087 6 C -0.111 4.111 7 C -0.123 4.123 8 C -0.140 4.140 9 C -0.046 4.046 10 C 0.440 3.560 11 O -0.439 6.439 12 C -0.238 4.238 13 C 0.017 3.983 14 C -0.049 4.049 15 C -0.151 4.151 16 C -0.085 4.085 17 C -0.226 4.226 18 C 0.112 3.888 19 O -0.251 6.251 20 C -0.396 4.396 21 H 0.083 0.917 22 C 0.012 3.988 23 N -0.922 5.922 24 Si 0.964 3.036 25 H -0.269 1.269 26 H -0.261 1.261 27 H -0.269 1.269 28 C -0.133 4.133 29 O -0.175 6.175 30 C 0.012 3.988 31 H 0.072 0.928 32 H 0.118 0.882 33 H 0.075 0.925 34 H 0.179 0.821 35 H 0.173 0.827 36 H 0.149 0.851 37 H 0.167 0.833 38 H 0.170 0.830 39 H 0.192 0.808 40 H 0.162 0.838 41 H 0.146 0.854 42 H 0.109 0.891 43 H 0.285 0.715 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.621 -8.259 13.050 31.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.251 6.251 3 C 0.081 3.919 4 C -0.189 4.189 5 C -0.105 4.105 6 C -0.129 4.129 7 C -0.124 4.124 8 C -0.159 4.159 9 C -0.094 4.094 10 C 0.321 3.679 11 O -0.317 6.317 12 C -0.257 4.257 13 C -0.001 4.001 14 C -0.049 4.049 15 C -0.169 4.169 16 C -0.103 4.103 17 C -0.245 4.245 18 C 0.064 3.936 19 O -0.160 6.160 20 C -0.472 4.472 21 H 0.100 0.900 22 C -0.186 4.186 23 N -0.564 5.564 24 Si 0.786 3.214 25 H -0.194 1.194 26 H -0.185 1.185 27 H -0.194 1.194 28 C -0.153 4.153 29 O -0.077 6.077 30 C -0.036 4.036 31 H 0.090 0.910 32 H 0.136 0.864 33 H 0.093 0.907 34 H 0.196 0.804 35 H 0.191 0.809 36 H 0.166 0.834 37 H 0.185 0.815 38 H 0.188 0.812 39 H 0.209 0.791 40 H 0.180 0.820 41 H 0.164 0.836 42 H 0.127 0.873 43 H 0.094 0.906 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -27.132 -8.202 12.778 31.092 hybrid contribution 0.181 1.007 -0.685 1.231 sum -26.951 -7.195 12.093 30.403 Atomic orbital electron populations 1.23472 0.75392 1.06010 1.02978 1.86140 1.24323 1.25859 1.88744 1.17973 0.85882 0.87020 1.01020 1.21507 1.01662 0.90021 1.05690 1.21037 0.93550 0.98565 0.97336 1.20673 0.94169 0.96762 1.01272 1.19961 0.92190 0.94212 1.06033 1.23146 0.95780 0.95259 1.01757 1.22875 0.85640 0.92910 1.08025 1.19791 0.83887 0.91025 0.73165 1.90985 1.31936 1.71857 1.36907 1.23478 1.00713 0.92070 1.09412 1.23002 0.88809 1.01253 0.87044 1.18938 0.95076 0.95843 0.95035 1.21322 0.90638 1.02828 1.02162 1.21079 0.99880 0.94408 0.94931 1.21449 0.97380 1.04138 1.01509 1.19406 0.94952 0.90747 0.88485 1.83525 1.36722 1.49106 1.46615 1.20718 0.87180 1.15906 1.23440 0.89986 1.25188 1.01338 0.94608 0.97462 1.69718 1.28389 1.23716 1.34547 0.85326 0.78790 0.78926 0.78313 1.19365 1.18503 1.19381 1.20222 0.94793 0.99361 1.00893 1.84019 1.12583 1.34896 1.76186 1.19411 0.88615 0.87343 1.08215 0.90950 0.86410 0.90666 0.80409 0.80927 0.83370 0.81501 0.81229 0.79122 0.82034 0.83598 0.87321 0.90577 0.88200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 113.37 1.11 1.23 16 2 O -0.34 -6.59 10.50 -93.21 -0.98 -7.57 16 3 C 0.13 2.71 6.70 22.56 0.15 2.86 16 4 C -0.17 -2.38 9.03 22.41 0.20 -2.18 16 5 C -0.09 -1.19 9.97 22.02 0.22 -0.97 16 6 C -0.11 -2.17 10.06 22.27 0.22 -1.95 16 7 C -0.12 -3.32 6.38 -20.24 -0.13 -3.45 16 8 C -0.14 -4.34 10.81 23.82 0.26 -4.08 16 9 C -0.05 -1.47 7.00 24.05 0.17 -1.30 16 10 C 0.44 14.43 6.14 26.69 0.16 14.60 16 11 O -0.44 -17.79 12.81 -4.83 -0.06 -17.86 16 12 C -0.24 -5.87 9.69 23.64 0.23 -5.64 16 13 C 0.02 0.38 9.80 23.86 0.23 0.62 16 14 C -0.05 -1.62 4.49 -20.16 -0.09 -1.71 16 15 C -0.15 -4.60 9.79 22.61 0.22 -4.38 16 16 C -0.09 -3.04 10.02 22.21 0.22 -2.82 16 17 C -0.23 -10.56 9.17 22.47 0.21 -10.35 16 18 C 0.11 5.75 6.64 22.53 0.15 5.90 16 19 O -0.25 -14.82 8.58 -22.86 -0.20 -15.01 16 20 C -0.40 -24.67 9.94 67.92 0.68 -24.00 16 21 H 0.08 5.30 5.42 -2.91 -0.02 5.28 16 22 C 0.01 0.74 5.49 84.83 0.47 1.21 16 23 N -0.92 -57.09 13.96 21.61 0.30 -56.79 16 24 Si 0.96 48.32 28.62 68.60 1.96 50.28 16 25 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 26 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 27 H -0.27 -13.70 7.11 99.48 0.71 -13.00 16 28 C -0.13 -5.77 6.62 22.71 0.15 -5.62 16 29 O -0.18 -5.31 10.37 -13.39 -0.14 -5.45 16 30 C 0.01 0.34 7.35 23.14 0.17 0.51 16 31 H 0.07 0.37 7.66 -2.38 -0.02 0.35 16 32 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.07 0.34 7.66 -2.39 -0.02 0.32 16 34 H 0.18 1.05 6.26 -2.91 -0.02 1.03 16 35 H 0.17 1.01 8.06 -2.91 -0.02 0.99 16 36 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 37 H 0.17 5.13 8.06 -2.91 -0.02 5.11 16 38 H 0.17 3.14 7.98 -2.91 -0.02 3.12 16 39 H 0.19 2.40 8.06 -2.91 -0.02 2.38 16 40 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 41 H 0.15 4.16 8.06 -2.91 -0.02 4.14 16 42 H 0.11 5.52 5.60 -2.91 -0.02 5.51 16 43 H 0.28 16.12 8.31 -92.71 -0.77 15.35 16 44 H 0.10 4.39 7.13 -2.91 -0.02 4.37 16 Total: -1.00 -83.33 383.59 6.95 -76.37 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 1.06 Total: 17.53 kcal Atomic # 6 Polarization: -46.51 SS G_CDS: 5.00 Total: -41.51 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.30 Total: -56.79 kcal Atomic # 8 Polarization: -44.51 SS G_CDS: -1.38 Total: -45.89 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 1.96 Total: 50.28 kcal Total: -83.33 6.95 -76.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096316211.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.311 kcal (2) G-P(sol) polarization free energy of solvation -83.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds