Wall clock time and date at job start Tue Mar 31 2020 05:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39810 * 120.07481 * 262.71421 * 3 2 1 5 5 C 1.37651 * 119.92725 * 179.97438 * 4 3 2 6 6 C 1.39180 * 120.07012 * 0.02562 * 5 4 3 7 7 N 1.39195 * 119.92083 * 179.97438 * 6 5 4 8 8 C 1.46844 * 110.99562 * 304.20703 * 7 6 5 9 9 C 1.53044 * 109.52154 * 174.16202 * 8 7 6 10 10 C 1.53121 * 109.27467 * 59.18124 * 9 8 7 11 11 N 1.46501 * 109.52162 * 182.44228 * 10 9 8 12 12 S 1.65597 * 120.00144 * 264.68420 * 11 10 9 13 13 O 1.42101 * 104.27931 * 181.06956 * 12 11 10 14 14 O 1.42102 * 104.27699 * 308.92605 * 12 11 10 15 15 C 1.81401 * 104.45126 * 64.99587 * 12 11 10 16 16 C 1.52999 * 109.47094 * 180.02562 * 15 12 11 17 17 C 1.50700 * 109.46967 * 180.02562 * 16 15 12 18 18 H 1.08005 * 119.99983 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00083 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99887 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00026 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47107 * 59.99728 * 21 19 17 23 23 H 1.48497 * 109.47058 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47357 * 299.99904 * 21 19 17 25 25 C 1.53118 * 109.15998 * 302.34543 * 10 9 8 26 26 C 1.46844 * 110.99703 * 180.02562 * 7 6 5 27 27 C 1.39173 * 120.15556 * 0.25219 * 6 5 4 28 28 C 1.37658 * 120.07365 * 359.44544 * 27 6 5 29 29 H 1.08008 * 120.03637 * 0.02562 * 4 3 2 30 30 H 1.07996 * 119.96774 * 180.02562 * 5 4 3 31 31 H 1.08999 * 109.46772 * 294.17627 * 8 7 6 32 32 H 1.08999 * 109.46650 * 54.15113 * 8 7 6 33 33 H 1.09004 * 109.49953 * 299.24201 * 9 8 7 34 34 H 1.08999 * 109.53710 * 179.14224 * 9 8 7 35 35 H 1.08990 * 109.57905 * 62.28541 * 10 9 8 36 36 H 0.97001 * 120.00133 * 84.67911 * 11 10 9 37 37 H 1.09003 * 109.47074 * 300.00338 * 15 12 11 38 38 H 1.09001 * 109.46657 * 60.00135 * 15 12 11 39 39 H 1.08993 * 109.47289 * 300.00085 * 16 15 12 40 40 H 1.09001 * 109.47270 * 60.00496 * 16 15 12 41 41 H 0.97001 * 119.99373 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.50364 * 297.71159 * 25 10 9 43 43 H 1.09002 * 109.53418 * 177.61821 * 25 10 9 44 44 H 1.09000 * 109.46299 * 305.85111 * 26 7 6 45 45 H 1.09003 * 109.46445 * 65.83253 * 26 7 6 46 46 H 1.07998 * 119.96587 * 179.72722 * 27 6 5 47 47 H 1.07994 * 120.03837 * 180.25131 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2685 0.1544 1.2001 5 6 4.6450 0.1540 1.1967 6 6 5.3394 0.0014 0.0001 7 7 6.7313 0.0020 0.0002 8 6 7.2569 1.2246 0.6209 9 6 8.7799 1.1261 0.7352 10 6 9.3806 0.9414 -0.6611 11 7 10.8335 0.7881 -0.5526 12 16 11.8214 2.1036 -0.7424 13 8 13.1344 1.5795 -0.5989 14 8 11.3955 2.6881 -1.9656 15 6 11.4107 3.1836 0.6560 16 6 12.2676 4.4495 0.5915 17 6 11.9269 5.3464 1.7536 18 1 11.1747 5.0436 2.4671 19 6 12.5754 6.5536 1.9060 20 7 13.4916 6.9221 1.0375 21 14 12.1525 7.6657 3.3462 22 1 12.4216 6.9505 4.6195 23 1 12.9843 8.8943 3.2836 24 1 10.7160 8.0360 3.2805 25 6 8.7805 -0.3117 -1.3046 26 6 7.2576 -0.1710 -1.3598 27 6 4.6452 -0.1461 -1.1971 28 6 3.2687 -0.1529 -1.2000 29 1 2.7303 0.2725 2.1290 30 1 5.1868 0.2723 2.1234 31 1 6.9937 2.0858 0.0068 32 1 6.8251 1.3419 1.6148 33 1 9.0435 0.2731 1.3605 34 1 9.1717 2.0399 1.1819 35 1 9.1511 1.8119 -1.2756 36 1 11.2169 -0.0839 -0.3695 37 1 10.3564 3.4560 0.6074 38 1 11.6076 2.6584 1.5907 39 1 13.3219 4.1774 0.6399 40 1 12.0704 4.9745 -0.3431 41 1 13.9476 7.7715 1.1446 42 1 9.0442 -1.1873 -0.7113 43 1 9.1723 -0.4256 -2.3154 44 1 6.8262 -1.0677 -1.8048 45 1 6.9946 0.6971 -1.9642 46 1 5.1871 -0.2600 -2.1243 47 1 2.7306 -0.2715 -2.1289 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096405537.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:57 Heat of formation + Delta-G solvation = -43.624337 kcal Electronic energy + Delta-G solvation = -29579.519047 eV Core-core repulsion = 25467.018158 eV Total energy + Delta-G solvation = -4112.500889 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 363.140 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.44992 -39.42558 -38.12125 -37.57369 -36.97411 -36.24226 -35.86394 -33.13758 -32.64085 -32.58588 -31.40154 -29.83961 -27.56806 -25.46609 -24.97911 -23.57840 -23.10331 -22.61964 -21.17583 -20.25514 -19.74540 -19.06032 -18.38309 -18.09209 -17.40154 -16.99960 -16.67924 -16.50167 -16.20529 -15.69119 -15.55325 -15.20450 -15.14730 -14.97964 -14.85799 -14.54123 -14.46871 -14.42783 -14.39175 -13.74704 -13.69202 -13.36981 -13.29262 -13.17681 -13.10351 -13.06551 -12.89167 -12.81943 -12.68901 -12.30764 -12.27118 -12.19122 -12.09359 -12.06931 -11.87966 -11.67395 -11.38299 -11.08718 -10.62099 -10.60760 -10.27638 -9.94736 -8.79140 -8.22918 -6.36292 -0.62925 -0.13577 0.48118 1.43229 1.46025 1.53996 1.67236 1.88507 1.93604 2.40214 2.68580 2.85693 2.98046 3.02259 3.10806 3.30855 3.69601 3.77529 3.94247 4.00456 4.02032 4.07929 4.15200 4.20869 4.34190 4.34872 4.42028 4.48966 4.57018 4.69638 4.70093 4.77257 4.86314 4.92680 4.93640 5.08349 5.12913 5.22699 5.26406 5.31815 5.32569 5.36925 5.44641 5.46345 5.70723 5.71827 6.02730 6.09486 6.20271 6.29488 6.51784 6.77616 7.33715 8.88922 Molecular weight = 363.14amu Principal moments of inertia in cm(-1) A = 0.010454 B = 0.002218 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.713657 B =12619.955586 C =14731.246874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C 0.283 3.717 3 C -0.082 4.082 4 C -0.039 4.039 5 C -0.149 4.149 6 C 0.144 3.856 7 N -0.489 5.489 8 C 0.058 3.942 9 C -0.147 4.147 10 C 0.135 3.865 11 N -1.099 6.099 12 S 2.617 3.383 13 O -1.002 7.002 14 O -0.998 6.998 15 C -0.587 4.587 16 C 0.019 3.981 17 C -0.534 4.534 18 H 0.079 0.921 19 C -0.006 4.006 20 N -0.935 5.935 21 Si 0.971 3.029 22 H -0.263 1.263 23 H -0.288 1.288 24 H -0.262 1.262 25 C -0.115 4.115 26 C 0.047 3.953 27 C -0.180 4.180 28 C -0.036 4.036 29 H 0.146 0.854 30 H 0.149 0.851 31 H 0.052 0.948 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.426 0.574 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.004 0.996 40 H 0.006 0.994 41 H 0.266 0.734 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.107 0.893 45 H 0.059 0.941 46 H 0.155 0.845 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.752 -18.618 -1.362 25.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.158 5.158 2 C -0.031 4.031 3 C -0.086 4.086 4 C -0.060 4.060 5 C -0.169 4.169 6 C 0.044 3.956 7 N -0.203 5.203 8 C -0.067 4.067 9 C -0.186 4.186 10 C 0.028 3.972 11 N -0.860 5.860 12 S 2.714 3.286 13 O -0.993 6.993 14 O -0.988 6.988 15 C -0.719 4.719 16 C -0.019 4.019 17 C -0.573 4.573 18 H 0.097 0.903 19 C -0.204 4.204 20 N -0.574 5.574 21 Si 0.795 3.205 22 H -0.188 1.188 23 H -0.214 1.214 24 H -0.187 1.187 25 C -0.154 4.154 26 C -0.080 4.080 27 C -0.200 4.200 28 C -0.057 4.057 29 H 0.164 0.836 30 H 0.166 0.834 31 H 0.070 0.930 32 H 0.121 0.879 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.263 0.737 37 H 0.162 0.838 38 H 0.163 0.837 39 H 0.022 0.978 40 H 0.024 0.976 41 H 0.075 0.925 42 H 0.108 0.892 43 H 0.103 0.897 44 H 0.125 0.875 45 H 0.077 0.923 46 H 0.172 0.828 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -18.541 -18.596 -1.904 26.329 hybrid contribution 0.287 1.180 0.660 1.382 sum -18.253 -17.416 -1.245 25.260 Atomic orbital electron populations 1.81286 1.13689 1.11788 1.09043 1.26052 0.92926 0.91861 0.92211 1.16070 0.83025 1.13270 0.96276 1.21171 0.93887 0.94070 0.96841 1.20899 0.93353 1.04827 0.97838 1.19363 0.88470 0.93795 0.93974 1.58782 1.04279 1.36093 1.21124 1.22301 0.94674 0.88615 1.01153 1.22355 0.94500 1.04598 0.97138 1.21139 0.78097 1.00703 0.97218 1.55319 1.16384 1.24521 1.89764 1.04508 0.72896 0.74731 0.76496 1.93504 1.39287 1.78400 1.88077 1.93503 1.82777 1.79211 1.43297 1.30439 1.10923 1.11386 1.19153 1.18818 0.93848 0.91249 0.98020 1.21488 1.22309 1.03107 1.10423 0.90329 1.26109 0.94784 0.99944 0.99544 1.70100 1.26352 1.23035 1.37946 0.85403 0.78639 0.77475 0.78971 1.18813 1.21385 1.18655 1.21859 0.94080 0.97164 1.02328 1.22436 0.94635 1.03366 0.87600 1.21463 0.93992 1.06453 0.98117 1.21181 0.93984 0.93749 0.96786 0.83615 0.83364 0.92974 0.87879 0.88772 0.90088 0.89900 0.73713 0.83773 0.83695 0.97756 0.97573 0.92545 0.89188 0.89677 0.87459 0.92284 0.82800 0.83679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -10.86 18.54 19.00 0.35 -10.51 16 2 C 0.28 4.74 15.33 88.33 1.35 6.09 16 3 C -0.08 -0.94 5.74 -21.27 -0.12 -1.06 16 4 C -0.04 -0.36 9.75 22.51 0.22 -0.14 16 5 C -0.15 -1.33 9.13 22.36 0.20 -1.13 16 6 C 0.14 1.42 5.64 38.42 0.22 1.63 16 7 N -0.49 -4.85 4.69 -695.34 -3.26 -8.11 16 8 C 0.06 0.63 5.25 86.33 0.45 1.08 16 9 C -0.15 -1.93 5.66 30.65 0.17 -1.75 16 10 C 0.14 2.16 2.76 45.07 0.12 2.28 16 11 N -1.10 -21.87 5.37 -169.06 -0.91 -22.78 16 12 S 2.62 84.48 5.44 -56.49 -0.31 84.17 16 13 O -1.00 -39.52 18.08 -127.65 -2.31 -41.83 16 14 O -1.00 -38.66 17.39 -127.65 -2.22 -40.88 16 15 C -0.59 -19.94 5.24 71.98 0.38 -19.56 16 16 C 0.02 0.97 4.98 29.85 0.15 1.12 16 17 C -0.53 -28.23 9.11 25.60 0.23 -28.00 16 18 H 0.08 3.76 7.74 -2.91 -0.02 3.74 16 19 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 20 N -0.93 -55.73 13.29 21.45 0.28 -55.44 16 21 Si 0.97 41.93 29.54 68.60 2.03 43.96 16 22 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 23 H -0.29 -12.45 7.11 99.48 0.71 -11.75 16 24 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 25 C -0.11 -1.25 5.63 30.65 0.17 -1.07 16 26 C 0.05 0.40 4.13 86.33 0.36 0.76 16 27 C -0.18 -1.49 8.79 22.36 0.20 -1.29 16 28 C -0.04 -0.32 9.75 22.51 0.22 -0.10 16 29 H 0.15 0.93 8.06 -2.91 -0.02 0.90 16 30 H 0.15 0.96 7.13 -2.91 -0.02 0.94 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.10 0.88 6.68 -2.39 -0.02 0.87 16 33 H 0.09 1.08 8.14 -2.38 -0.02 1.07 16 34 H 0.08 1.18 5.88 -2.39 -0.01 1.17 16 35 H 0.08 1.53 7.48 -2.39 -0.02 1.51 16 36 H 0.43 6.60 8.80 -96.75 -0.85 5.75 16 37 H 0.14 4.10 6.76 -2.39 -0.02 4.09 16 38 H 0.14 4.22 8.14 -2.39 -0.02 4.20 16 39 H 0.00 0.22 8.14 -2.39 -0.02 0.21 16 40 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 42 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.11 0.59 6.98 -2.39 -0.02 0.57 16 45 H 0.06 0.50 7.71 -2.39 -0.02 0.48 16 46 H 0.15 0.76 5.77 -2.91 -0.02 0.74 16 47 H 0.15 0.85 8.06 -2.91 -0.02 0.83 16 Total: -1.00 -78.95 398.34 -1.39 -80.35 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 0.16 Total: 12.06 kcal Atomic # 6 Polarization: -45.77 SS G_CDS: 4.79 Total: -40.98 kcal Atomic # 7 Polarization: -93.31 SS G_CDS: -3.53 Total: -96.84 kcal Atomic # 8 Polarization: -78.18 SS G_CDS: -4.53 Total: -82.71 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Atomic # 16 Polarization: 84.48 SS G_CDS: -0.31 Total: 84.17 kcal Total: -78.95 -1.39 -80.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096405537.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.723 kcal (2) G-P(sol) polarization free energy of solvation -78.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds