Wall clock time and date at job start Tue Mar 31 2020 05:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30981 * 126.43765 * 2 1 4 4 C 1.35212 * 105.57925 * 180.12307 * 3 2 1 5 5 C 1.48439 * 126.41411 * 179.89925 * 4 3 2 6 6 C 1.39467 * 120.04410 * 359.97429 * 5 4 3 7 7 C 1.38132 * 120.18147 * 180.29705 * 6 5 4 8 8 C 1.38038 * 120.28173 * 359.72026 * 7 6 5 9 9 C 1.39693 * 120.08741 * 0.02562 * 8 7 6 10 10 C 1.47745 * 120.09343 * 180.02562 * 9 8 7 11 11 O 1.21584 * 119.99867 * 144.95501 * 10 9 8 12 12 N 1.34775 * 119.99905 * 324.95075 * 10 9 8 13 13 C 1.36879 * 119.99896 * 4.58381 * 12 10 9 14 14 H 1.08000 * 119.99852 * 316.63709 * 13 12 10 15 15 C 1.39048 * 119.99617 * 136.63934 * 13 12 10 16 16 N 1.31363 * 120.00090 * 343.99419 * 15 13 12 17 17 Si 1.86801 * 119.99448 * 163.99674 * 15 13 12 18 18 H 1.48497 * 109.47160 * 90.00104 * 17 15 13 19 19 H 1.48501 * 109.46650 * 209.99484 * 17 15 13 20 20 H 1.48499 * 109.47425 * 329.99416 * 17 15 13 21 21 C 1.46498 * 119.99902 * 184.58295 * 12 10 9 22 22 C 1.50700 * 109.46953 * 91.60690 * 21 12 10 23 23 C 1.38234 * 119.99842 * 273.50879 * 22 21 12 24 24 C 1.38238 * 119.99492 * 179.76552 * 23 22 21 25 25 C 1.38231 * 120.00459 * 0.49210 * 24 23 22 26 26 C 1.38236 * 119.99752 * 359.79005 * 25 24 23 27 27 C 1.38235 * 120.00126 * 359.94920 * 26 25 24 28 28 C 1.39031 * 120.04422 * 179.71002 * 5 4 3 29 29 N 1.30753 * 107.17050 * 359.64223 * 4 3 2 30 30 O 1.21288 * 110.10239 * 0.22414 * 29 4 3 31 31 H 1.08998 * 109.46877 * 180.25223 * 1 2 3 32 32 H 1.08999 * 109.46894 * 300.25206 * 1 2 3 33 33 H 1.09004 * 109.46939 * 60.25068 * 1 2 3 34 34 H 1.07999 * 119.90833 * 0.02562 * 6 5 4 35 35 H 1.08006 * 119.86426 * 179.73990 * 7 6 5 36 36 H 1.08003 * 119.96336 * 179.97438 * 8 7 6 37 37 H 0.96998 * 119.99199 * 180.02562 * 16 15 13 38 38 H 1.08997 * 109.47133 * 211.60646 * 21 12 10 39 39 H 1.08999 * 109.47285 * 331.60885 * 21 12 10 40 40 H 1.07995 * 119.99986 * 0.02562 * 23 22 21 41 41 H 1.08004 * 119.99655 * 180.25254 * 24 23 22 42 42 H 1.08002 * 120.00517 * 179.76177 * 25 24 23 43 43 H 1.08004 * 120.00052 * 179.97438 * 26 25 24 44 44 H 1.08007 * 120.00199 * 179.97438 * 27 26 25 45 45 H 1.07991 * 120.13731 * 359.97438 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2850 1.0538 0.0000 4 6 3.5485 0.5723 -0.0028 5 6 4.7972 1.3748 -0.0060 6 6 4.7319 2.7680 -0.0069 7 6 5.8921 3.5176 -0.0161 8 6 7.1236 2.8941 -0.0187 9 6 7.2025 1.4994 -0.0125 10 6 8.5206 0.8319 -0.0146 11 8 8.6758 -0.2090 0.5942 12 7 9.5507 1.3767 -0.6916 13 6 9.4029 2.5945 -1.2988 14 1 8.5037 2.8151 -1.8547 15 6 10.4106 3.5475 -1.1998 16 7 11.3474 3.4206 -0.2877 17 14 10.4321 5.0083 -2.3640 18 1 9.6574 6.1268 -1.7691 19 1 11.8347 5.4418 -2.5881 20 1 9.8217 4.6174 -3.6600 21 6 10.8286 0.6656 -0.7775 22 6 10.8431 -0.1935 -2.0156 23 6 10.3192 -1.4720 -1.9758 24 6 10.3282 -2.2583 -3.1128 25 6 10.8702 -1.7697 -4.2868 26 6 11.3994 -0.4932 -4.3250 27 6 11.3856 0.2950 -3.1895 28 6 6.0335 0.7387 -0.0026 29 7 3.4644 -0.7325 0.0035 30 8 2.3009 -1.0752 0.0052 31 1 -0.3633 -1.0276 0.0045 32 1 -0.3633 0.5177 0.8877 33 1 -0.3633 0.5100 -0.8923 34 1 3.7716 3.2621 -0.0049 35 1 5.8356 4.5961 -0.0210 36 1 8.0275 3.4852 -0.0263 37 1 12.0501 4.0857 -0.2185 38 1 11.6437 1.3877 -0.8268 39 1 10.9539 0.0358 0.1032 40 1 9.8991 -1.8551 -1.0576 41 1 9.9151 -3.2558 -3.0828 42 1 10.8806 -2.3854 -5.1741 43 1 11.8233 -0.1116 -5.2422 44 1 11.7995 1.2922 -3.2193 45 1 6.0883 -0.3398 0.0028 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096422300.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:23 Heat of formation + Delta-G solvation = 95.187009 kcal Electronic energy + Delta-G solvation = -31520.714382 eV Core-core repulsion = 27278.788854 eV Total energy + Delta-G solvation = -4241.925528 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.137 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.51303 -39.59541 -38.62744 -37.53203 -35.78144 -35.01577 -33.73945 -32.04644 -31.32842 -30.61966 -30.31200 -30.04698 -28.87758 -26.03204 -25.03253 -24.52681 -23.15932 -22.41592 -21.94401 -20.84977 -20.66915 -19.38559 -18.16388 -18.09466 -17.09678 -16.38910 -15.91316 -15.69067 -15.23109 -14.97243 -14.78069 -14.56822 -14.38982 -14.05578 -13.99008 -13.72945 -13.53037 -13.43794 -13.07878 -12.86790 -12.83325 -12.75192 -12.22429 -12.16264 -12.07338 -11.68063 -11.46933 -11.43712 -11.27765 -11.08641 -10.96901 -10.84133 -10.73813 -10.49323 -10.40780 -10.24671 -10.10951 -9.29285 -8.74924 -8.48599 -8.35760 -8.21118 -8.12730 -7.59424 -6.52800 -4.27128 0.92054 1.43095 1.61473 1.90745 1.97102 2.62948 2.77646 3.01150 3.12298 3.16503 3.51303 3.74855 3.96438 4.02820 4.25692 4.42508 4.73423 4.85906 4.89742 4.97700 5.00710 5.32179 5.36325 5.40553 5.43171 5.44841 5.55549 5.60848 5.80660 5.82990 5.86486 5.96353 5.98562 6.08390 6.14670 6.32911 6.38919 6.45774 6.57905 6.69012 6.75843 6.91744 7.00755 7.01518 7.04148 7.09320 7.26069 7.35828 7.41591 7.59173 7.80451 8.19698 8.20666 8.88459 9.30823 9.75507 10.48286 Molecular weight = 363.14amu Principal moments of inertia in cm(-1) A = 0.009378 B = 0.003195 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2984.968608 B = 8760.694895 C =10648.588192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.169 3.831 3 N -0.478 5.478 4 C 0.230 3.770 5 C -0.056 4.056 6 C -0.067 4.067 7 C -0.146 4.146 8 C -0.043 4.043 9 C -0.098 4.098 10 C 0.517 3.483 11 O -0.593 6.593 12 N -0.422 5.422 13 C -0.341 4.341 14 H 0.091 0.909 15 C 0.048 3.952 16 N -0.854 5.854 17 Si 0.907 3.093 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.266 1.266 21 C 0.146 3.854 22 C -0.078 4.078 23 C -0.106 4.106 24 C -0.131 4.131 25 C -0.134 4.134 26 C -0.132 4.132 27 C -0.096 4.096 28 C -0.041 4.041 29 N -0.378 5.378 30 O 0.077 5.923 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.168 0.832 37 H 0.273 0.727 38 H 0.111 0.889 39 H 0.069 0.931 40 H 0.124 0.876 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.120 0.880 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.855 -2.347 -3.114 13.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.052 4.052 3 N -0.212 5.212 4 C -0.039 4.039 5 C -0.058 4.058 6 C -0.088 4.088 7 C -0.164 4.164 8 C -0.062 4.062 9 C -0.101 4.101 10 C 0.306 3.694 11 O -0.479 6.479 12 N -0.139 5.139 13 C -0.469 4.469 14 H 0.109 0.891 15 C -0.159 4.159 16 N -0.489 5.489 17 Si 0.732 3.268 18 H -0.198 1.198 19 H -0.205 1.205 20 H -0.191 1.191 21 C 0.023 3.977 22 C -0.079 4.079 23 C -0.125 4.125 24 C -0.149 4.149 25 C -0.152 4.152 26 C -0.150 4.150 27 C -0.115 4.115 28 C -0.062 4.062 29 N -0.085 5.085 30 O 0.017 5.983 31 H 0.114 0.886 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.185 0.815 37 H 0.084 0.916 38 H 0.129 0.871 39 H 0.087 0.913 40 H 0.142 0.858 41 H 0.131 0.869 42 H 0.129 0.871 43 H 0.131 0.869 44 H 0.138 0.862 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.779 -2.867 -2.733 12.427 hybrid contribution -0.145 0.757 -0.748 1.074 sum -11.924 -2.110 -3.481 12.599 Atomic orbital electron populations 1.20348 0.80340 1.05443 1.05526 1.28764 0.98880 0.80987 0.96535 1.71942 0.99987 1.28668 1.20607 1.23964 0.92883 0.87226 0.99865 1.17109 0.87033 0.92049 1.09632 1.21165 0.99089 0.91781 0.96720 1.21128 0.91964 1.00035 1.03315 1.22515 0.99368 0.94457 0.89882 1.19934 0.93567 0.93990 1.02567 1.18252 0.85013 0.85527 0.80558 1.90622 1.84584 1.26045 1.46668 1.43132 1.09274 1.16961 1.44495 1.19430 1.06443 0.89632 1.31430 0.89104 1.25420 0.96415 0.98382 0.95718 1.69853 1.14001 1.35687 1.29365 0.86241 0.78138 0.81278 0.81142 1.19787 1.20480 1.19052 1.20412 0.89867 0.94543 0.92840 1.20594 0.96283 0.94227 0.96845 1.21279 0.98442 0.94235 0.98530 1.21056 1.00872 0.99613 0.93384 1.20975 1.00430 0.96182 0.97605 1.21055 1.01132 0.94673 0.98108 1.21105 0.98860 0.99235 0.92285 1.21147 0.89918 1.00310 0.94832 1.74950 0.96598 1.15215 1.21706 1.85287 1.11504 1.35706 1.65776 0.88601 0.87999 0.88002 0.85442 0.85356 0.81483 0.91632 0.87124 0.91258 0.85825 0.86944 0.87079 0.86880 0.86169 0.85194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.29 10.51 36.01 0.38 0.09 16 2 C 0.17 1.90 8.50 -12.99 -0.11 1.79 16 3 N -0.48 -6.98 11.25 -9.88 -0.11 -7.09 16 4 C 0.23 3.95 7.80 -156.12 -1.22 2.73 16 5 C -0.06 -1.02 5.87 -104.94 -0.62 -1.64 16 6 C -0.07 -1.09 9.70 -39.16 -0.38 -1.47 16 7 C -0.15 -2.39 10.02 -39.69 -0.40 -2.79 16 8 C -0.04 -0.85 7.79 -39.11 -0.30 -1.15 16 9 C -0.10 -2.12 5.47 -105.01 -0.57 -2.69 16 10 C 0.52 12.68 7.37 -12.38 -0.09 12.59 16 11 O -0.59 -15.67 15.99 5.29 0.08 -15.58 16 12 N -0.42 -10.16 2.46 -117.21 -0.29 -10.45 16 13 C -0.34 -8.00 6.06 -15.00 -0.09 -8.09 16 14 H 0.09 2.11 6.47 -52.49 -0.34 1.77 16 15 C 0.05 1.10 4.99 -17.45 -0.09 1.01 16 16 N -0.85 -20.70 11.53 55.50 0.64 -20.06 16 17 Si 0.91 17.98 29.58 -169.99 -5.03 12.95 16 18 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 19 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 20 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 21 C 0.15 3.37 5.19 -5.19 -0.03 3.34 16 22 C -0.08 -1.64 5.46 -104.62 -0.57 -2.21 16 23 C -0.11 -2.11 9.72 -39.58 -0.38 -2.50 16 24 C -0.13 -2.25 10.05 -39.58 -0.40 -2.65 16 25 C -0.13 -2.13 10.05 -39.58 -0.40 -2.53 16 26 C -0.13 -2.20 10.05 -39.58 -0.40 -2.59 16 27 C -0.10 -1.85 9.69 -39.58 -0.38 -2.23 16 28 C -0.04 -0.84 9.25 -38.83 -0.36 -1.19 16 29 N -0.38 -6.46 11.85 30.96 0.37 -6.09 16 30 O 0.08 1.05 11.29 18.06 0.20 1.25 16 31 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.13 1.80 7.87 -52.49 -0.41 1.39 16 35 H 0.13 1.71 8.06 -52.48 -0.42 1.29 16 36 H 0.17 3.48 5.59 -52.48 -0.29 3.18 16 37 H 0.27 6.28 8.31 -40.82 -0.34 5.94 16 38 H 0.11 2.64 5.65 -51.93 -0.29 2.35 16 39 H 0.07 1.66 7.28 -51.93 -0.38 1.28 16 40 H 0.12 2.57 7.69 -52.49 -0.40 2.17 16 41 H 0.11 1.65 8.06 -52.48 -0.42 1.22 16 42 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 43 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 44 H 0.12 2.30 8.06 -52.48 -0.42 1.87 16 45 H 0.13 2.76 7.80 -52.49 -0.41 2.35 16 LS Contribution 390.16 15.07 5.88 5.88 Total: -1.00 -29.92 390.16 -9.71 -39.63 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -5.05 Total: 11.72 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -6.41 Total: -12.17 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.61 Total: -43.69 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.29 Total: -14.33 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.92 -9.71 -39.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096422300.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.819 kcal (2) G-P(sol) polarization free energy of solvation -29.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds