Wall clock time and date at job start Tue Mar 31 2020 05:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36967 * 119.99661 * 2 1 4 4 H 1.07999 * 120.00073 * 172.09445 * 3 2 1 5 5 C 1.38982 * 120.00262 * 352.09271 * 3 2 1 6 6 N 1.31412 * 119.99899 * 5.51098 * 5 3 2 7 7 Si 1.86800 * 120.00191 * 185.50636 * 5 3 2 8 8 H 1.48498 * 109.46996 * 90.00333 * 7 5 3 9 9 H 1.48495 * 109.47026 * 210.00089 * 7 5 3 10 10 H 1.48495 * 109.46977 * 330.00112 * 7 5 3 11 11 C 1.34771 * 120.00260 * 180.02562 * 2 1 3 12 12 O 1.21639 * 120.00076 * 184.27079 * 11 2 1 13 13 C 1.47186 * 119.99930 * 4.26438 * 11 2 1 14 14 C 1.38049 * 126.82141 * 307.10557 * 13 11 2 15 15 N 1.34160 * 107.87864 * 179.97438 * 14 13 11 16 16 C 1.46510 * 125.15325 * 179.97438 * 15 14 13 17 17 C 1.52993 * 109.47130 * 74.97721 * 16 15 14 18 18 C 1.52998 * 109.46544 * 194.97830 * 16 15 14 19 19 C 1.52992 * 109.47156 * 314.97411 * 16 15 14 20 20 N 1.39763 * 109.69068 * 359.97438 * 15 14 13 21 21 C 1.31377 * 109.09605 * 0.02562 * 20 15 14 22 22 C 1.48244 * 126.51591 * 179.97438 * 21 20 15 23 23 C 1.39398 * 120.11451 * 132.24286 * 22 21 20 24 24 C 1.37945 * 119.92057 * 179.97438 * 23 22 21 25 25 C 1.38599 * 120.15362 * 359.97438 * 24 23 22 26 26 F 1.35105 * 119.88397 * 180.02562 * 25 24 23 27 27 C 1.38484 * 120.23006 * 0.03986 * 25 24 23 28 28 C 1.38215 * 120.07742 * 359.70286 * 27 25 24 29 29 F 1.35103 * 120.07789 * 180.29863 * 28 27 25 30 30 H 1.08999 * 109.46939 * 182.98149 * 1 2 3 31 31 H 1.09008 * 109.46788 * 302.97338 * 1 2 3 32 32 H 1.08999 * 109.47363 * 62.97716 * 1 2 3 33 33 H 0.97005 * 119.99961 * 180.02562 * 6 5 3 34 34 H 1.08000 * 126.06012 * 0.02562 * 14 13 11 35 35 H 1.09006 * 109.47217 * 59.99890 * 17 16 15 36 36 H 1.08994 * 109.47345 * 179.97438 * 17 16 15 37 37 H 1.09010 * 109.47253 * 299.99863 * 17 16 15 38 38 H 1.08995 * 109.47734 * 59.99792 * 18 16 15 39 39 H 1.09007 * 109.46556 * 180.02562 * 18 16 15 40 40 H 1.08998 * 109.47021 * 299.99489 * 18 16 15 41 41 H 1.09007 * 109.47244 * 59.99942 * 19 16 15 42 42 H 1.08997 * 109.47505 * 180.02562 * 19 16 15 43 43 H 1.09003 * 109.47578 * 300.00677 * 19 16 15 44 44 H 1.07996 * 120.03777 * 359.95885 * 23 22 21 45 45 H 1.08002 * 119.92250 * 180.02562 * 24 23 22 46 46 H 1.08002 * 119.96124 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1862 0.0000 4 1 3.2221 1.1907 0.1286 5 6 1.4648 2.3841 -0.1656 6 7 0.1516 2.3888 -0.2135 7 14 2.4108 3.9875 -0.3198 8 1 2.7116 4.2490 -1.7503 9 1 1.5918 5.0998 0.2251 10 1 3.6809 3.8881 0.4430 11 6 2.1390 -1.1671 -0.0005 12 8 3.3528 -1.1686 0.0779 13 6 1.4061 -2.4400 -0.0959 14 6 0.3609 -2.8549 0.7048 15 7 -0.0217 -4.0705 0.2856 16 6 -1.1048 -4.8632 0.8730 17 6 -2.4531 -4.2788 0.4476 18 6 -0.9995 -6.3100 0.3865 19 6 -0.9924 -4.8288 2.3984 20 7 0.7695 -4.4661 -0.7965 21 6 1.6407 -3.5189 -1.0609 22 6 2.6662 -3.5374 -2.1312 23 6 2.8228 -2.4342 -2.9689 24 6 3.7787 -2.4555 -3.9633 25 6 4.5841 -3.5709 -4.1309 26 9 5.5190 -3.5857 -5.1062 27 6 4.4338 -4.6704 -3.3025 28 6 3.4827 -4.6573 -2.2997 29 9 3.3401 -5.7275 -1.4876 30 1 -0.3633 -1.0263 0.0535 31 1 -0.3633 0.5594 0.8622 32 1 -0.3634 0.4669 -0.9154 33 1 -0.3265 3.2248 -0.3295 34 1 -0.0726 -2.2990 1.5230 35 1 -2.5332 -4.3034 -0.6393 36 1 -3.2589 -4.8688 0.8843 37 1 -2.5281 -3.2480 0.7942 38 1 -0.0389 -6.7263 0.6895 39 1 -1.8056 -6.8997 0.8232 40 1 -1.0795 -6.3345 -0.7003 41 1 -1.0673 -3.7980 2.7451 42 1 -1.7979 -5.4189 2.8356 43 1 -0.0317 -5.2450 2.7016 44 1 2.1963 -1.5641 -2.8398 45 1 3.9003 -1.6007 -4.6121 46 1 5.0641 -5.5371 -3.4367 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096426330.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:11 Heat of formation + Delta-G solvation = -5.095124 kcal Electronic energy + Delta-G solvation = -33505.232752 eV Core-core repulsion = 28840.562229 eV Total energy + Delta-G solvation = -4664.670523 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.150 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -48.92667 -48.77063 -41.00039 -38.58692 -38.07101 -36.50081 -34.62231 -31.99503 -31.63474 -30.75720 -29.88096 -28.81882 -27.61931 -27.47623 -26.22846 -24.60170 -23.56860 -23.05261 -22.06549 -20.62577 -19.57103 -18.57896 -18.01341 -17.06109 -16.93197 -16.63826 -15.97048 -15.83262 -15.73037 -15.35091 -15.19714 -15.11401 -14.52986 -14.30217 -14.12621 -14.04717 -13.98788 -13.69555 -13.53449 -13.08405 -12.84316 -12.64142 -12.46489 -12.42327 -12.17184 -11.96320 -11.93171 -11.81578 -11.66154 -11.45604 -11.41166 -11.28695 -11.16240 -10.99403 -10.83989 -10.48571 -10.36681 -10.18539 -9.38553 -9.04373 -8.90438 -8.58098 -8.30547 -7.89195 -7.83595 -6.26393 -3.80589 0.90059 1.17295 2.10456 2.49168 2.66358 3.17102 3.23939 3.29719 3.52953 3.95840 4.02819 4.14161 4.29000 4.49295 4.54778 4.58772 4.68957 4.72056 4.91376 4.96938 5.07464 5.18985 5.24832 5.27655 5.32628 5.46748 5.50884 5.53473 5.61789 5.70136 5.75682 5.81422 5.89187 6.00073 6.04223 6.05477 6.12169 6.13829 6.20920 6.34629 6.41837 6.74951 6.89198 7.08432 7.21263 7.40039 7.54937 7.89766 8.09334 8.50053 9.19253 9.44723 10.02499 10.67755 Molecular weight = 363.15amu Principal moments of inertia in cm(-1) A = 0.006481 B = 0.004819 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4319.057750 B = 5808.423111 C = 9444.276557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.440 5.440 3 C -0.295 4.295 4 H 0.105 0.895 5 C 0.027 3.973 6 N -0.887 5.887 7 Si 0.930 3.070 8 H -0.277 1.277 9 H -0.284 1.284 10 H -0.269 1.269 11 C 0.507 3.493 12 O -0.586 6.586 13 C -0.219 4.219 14 C 0.076 3.924 15 N -0.357 5.357 16 C 0.180 3.820 17 C -0.160 4.160 18 C -0.142 4.142 19 C -0.161 4.161 20 N -0.272 5.272 21 C 0.132 3.868 22 C -0.036 4.036 23 C -0.020 4.020 24 C -0.159 4.159 25 C 0.130 3.870 26 F -0.134 7.134 27 C -0.198 4.198 28 C 0.152 3.848 29 F -0.124 7.124 30 H 0.027 0.973 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.265 0.735 34 H 0.178 0.822 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.148 0.852 45 H 0.146 0.854 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.165 -13.758 -1.670 14.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.157 5.157 3 C -0.423 4.423 4 H 0.123 0.877 5 C -0.175 4.175 6 N -0.528 5.528 7 Si 0.756 3.244 8 H -0.203 1.203 9 H -0.210 1.210 10 H -0.194 1.194 11 C 0.295 3.705 12 O -0.472 6.472 13 C -0.233 4.233 14 C -0.069 4.069 15 N -0.140 5.140 16 C 0.097 3.903 17 C -0.218 4.218 18 C -0.200 4.200 19 C -0.220 4.220 20 N -0.092 5.092 21 C -0.036 4.036 22 C -0.040 4.040 23 C -0.039 4.039 24 C -0.178 4.178 25 C 0.110 3.890 26 F -0.113 7.113 27 C -0.218 4.218 28 C 0.131 3.869 29 F -0.102 7.102 30 H 0.045 0.955 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.195 0.805 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.086 0.914 44 H 0.166 0.834 45 H 0.164 0.836 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.279 -14.841 -1.873 15.863 hybrid contribution 0.560 1.573 0.324 1.701 sum -4.719 -13.268 -1.549 14.167 Atomic orbital electron populations 1.21925 0.80480 0.96624 1.04326 1.43598 1.05998 1.04503 1.61627 1.19809 0.93919 0.82127 1.46438 0.87685 1.25318 0.95763 0.99645 0.96760 1.70174 1.05952 1.27225 1.49455 0.85861 0.79276 0.80541 0.78687 1.20300 1.20977 1.19389 1.16813 0.86651 0.81799 0.85282 1.90623 1.13437 1.86712 1.56399 1.21552 1.01991 0.98606 1.01196 1.22747 0.96496 0.87392 1.00306 1.48339 1.27224 1.13609 1.24785 1.20731 0.84509 0.91991 0.93074 1.22275 0.94806 1.01921 1.02835 1.21897 1.02679 0.92547 1.02867 1.22266 1.03520 1.03531 0.92639 1.77183 1.06493 1.21644 1.03912 1.21260 0.95068 0.91923 0.95316 1.17715 0.96064 0.94126 0.96052 1.20969 0.95688 0.96497 0.90768 1.21090 0.97162 0.98246 1.01294 1.17326 0.89055 0.94806 0.87808 1.91508 1.62932 1.96833 1.60024 1.20798 1.02430 1.00620 0.97908 1.17196 0.95791 0.83933 0.89964 1.91528 1.94758 1.53120 1.70812 0.95490 0.91649 0.91206 0.92424 0.80469 0.91504 0.90549 0.91441 0.91600 0.91180 0.90983 0.91352 0.90162 0.91418 0.83432 0.83628 0.83468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.43 8.61 59.85 0.52 2.94 16 2 N -0.44 -11.01 3.02 -123.50 -0.37 -11.38 16 3 C -0.30 -7.97 9.55 -14.98 -0.14 -8.11 16 4 H 0.11 2.99 7.18 -52.49 -0.38 2.61 16 5 C 0.03 0.68 5.46 -17.46 -0.10 0.59 16 6 N -0.89 -22.48 9.46 55.50 0.53 -21.96 16 7 Si 0.93 20.30 29.56 -169.99 -5.02 15.28 16 8 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 11 C 0.51 12.45 6.87 -12.63 -0.09 12.36 16 12 O -0.59 -16.40 16.70 5.24 0.09 -16.31 16 13 C -0.22 -4.50 5.29 -102.94 -0.54 -5.05 16 14 C 0.08 1.29 8.19 -16.60 -0.14 1.15 16 15 N -0.36 -5.43 3.40 -48.13 -0.16 -5.59 16 16 C 0.18 1.97 1.22 -131.82 -0.16 1.80 16 17 C -0.16 -1.50 8.70 37.15 0.32 -1.18 16 18 C -0.14 -1.43 8.05 37.16 0.30 -1.13 16 19 C -0.16 -1.46 8.27 37.15 0.31 -1.15 16 20 N -0.27 -4.80 11.35 34.57 0.39 -4.41 16 21 C 0.13 2.56 6.54 -80.56 -0.53 2.03 16 22 C -0.04 -0.66 5.77 -104.84 -0.61 -1.27 16 23 C -0.02 -0.34 9.31 -39.26 -0.37 -0.70 16 24 C -0.16 -2.34 10.01 -39.56 -0.40 -2.74 16 25 C 0.13 1.85 7.30 -39.36 -0.29 1.57 16 26 F -0.13 -1.84 17.26 2.25 0.04 -1.80 16 27 C -0.20 -2.81 9.99 -39.50 -0.39 -3.21 16 28 C 0.15 2.53 7.28 -39.08 -0.28 2.24 16 29 F -0.12 -2.12 16.69 2.25 0.04 -2.08 16 30 H 0.03 0.51 4.20 -51.93 -0.22 0.29 16 31 H 0.06 1.50 7.20 -51.92 -0.37 1.13 16 32 H 0.07 1.65 6.91 -51.93 -0.36 1.29 16 33 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 34 H 0.18 2.61 7.07 -52.49 -0.37 2.23 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 40 H 0.07 0.81 8.01 -51.93 -0.42 0.39 16 41 H 0.07 0.61 7.28 -51.92 -0.38 0.23 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.15 2.66 7.92 -52.49 -0.42 2.25 16 45 H 0.15 1.82 8.06 -52.49 -0.42 1.39 16 46 H 0.15 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 392.34 15.07 5.91 5.91 Total: -1.00 -31.48 392.34 -7.00 -38.48 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -5.85 Total: 3.72 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -2.58 Total: 0.14 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 0.38 Total: -43.34 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: 0.09 Total: -16.31 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.08 Total: -3.88 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.48 -7.00 -38.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096426330.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.380 kcal (2) G-P(sol) polarization free energy of solvation -31.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds