Wall clock time and date at job start Tue Mar 31 2020 06:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35949 * 116.99703 * 2 1 4 4 C 1.38075 * 120.00462 * 359.97438 * 3 2 1 5 5 C 1.39976 * 119.83964 * 180.02562 * 4 3 2 6 6 C 1.46961 * 120.07862 * 180.02562 * 5 4 3 7 7 C 1.35046 * 120.00015 * 134.97855 * 6 5 4 8 8 C 1.46212 * 120.00438 * 347.18812 * 7 6 5 9 9 O 1.21738 * 119.99551 * 352.81891 * 8 7 6 10 10 N 1.34771 * 120.00570 * 172.81805 * 8 7 6 11 11 C 1.39841 * 120.00373 * 183.12046 * 10 8 7 12 12 C 1.39024 * 120.00088 * 323.85923 * 11 10 8 13 13 C 1.38208 * 120.23395 * 179.72151 * 12 11 10 14 14 C 1.38010 * 120.23110 * 0.55105 * 13 12 11 15 15 C 1.39643 * 119.99301 * 359.72269 * 14 13 12 16 16 C 1.43202 * 120.11394 * 179.97438 * 15 14 13 17 17 N 9.43417 * 141.86780 * 294.36365 * 5 1 2 18 18 C 1.38613 * 120.00187 * 144.12733 * 11 10 8 19 19 C 1.40033 * 119.84627 * 359.97438 * 5 4 3 20 20 C 1.37649 * 119.99714 * 0.02562 * 19 5 4 21 21 C 1.39064 * 120.16099 * 0.27249 * 20 19 5 22 22 O 1.35615 * 119.92018 * 179.70157 * 21 20 19 23 23 C 1.34758 * 116.99950 * 6.43968 * 22 21 20 24 24 H 1.07996 * 120.00165 * 6.40776 * 23 22 21 25 25 C 1.38706 * 119.99839 * 186.40144 * 23 22 21 26 26 N 1.31519 * 120.00092 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99761 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.47305 * 60.00265 * 27 25 23 29 29 H 1.48505 * 109.46934 * 179.97438 * 27 25 23 30 30 H 1.48496 * 109.47272 * 300.00372 * 27 25 23 31 31 H 1.09008 * 109.47144 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47248 * 300.00305 * 1 2 3 33 33 H 1.09001 * 109.46957 * 60.00446 * 1 2 3 34 34 H 1.08002 * 120.07964 * 359.97438 * 4 3 2 35 35 H 1.07999 * 119.99733 * 314.97629 * 6 5 4 36 36 H 1.08005 * 119.99713 * 167.18624 * 7 6 5 37 37 H 0.97008 * 119.99563 * 3.11784 * 10 8 7 38 38 H 1.08006 * 119.87920 * 0.02562 * 12 11 10 39 39 H 1.08005 * 119.88021 * 180.27598 * 13 12 11 40 40 H 1.07996 * 120.00605 * 179.74778 * 14 13 12 41 41 H 1.08005 * 120.11313 * 359.97438 * 18 11 10 42 42 H 1.07992 * 120.00417 * 180.02562 * 19 5 4 43 43 H 1.07993 * 119.92188 * 179.97438 * 20 19 5 44 44 H 0.96998 * 119.99634 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2941 2.3694 -0.0005 5 6 1.9331 3.6148 -0.0011 6 6 1.1379 4.8506 -0.0011 7 6 1.4680 5.8660 0.8258 8 6 2.4255 5.6453 1.9086 9 8 2.8255 4.5207 2.1475 10 7 2.8652 6.6869 2.6421 11 6 3.8298 6.4857 3.6344 12 6 3.8163 5.3192 4.3906 13 6 4.7708 5.1128 5.3687 14 6 5.7371 6.0683 5.6092 15 6 5.7562 7.2460 4.8592 16 6 6.7574 8.2394 5.1070 17 7 7.5518 9.0269 5.3039 18 6 4.7960 7.4518 3.8679 19 6 3.3319 3.6803 -0.0005 20 6 4.0752 2.5218 0.0000 21 6 3.4405 1.2844 -0.0057 22 8 4.1775 0.1461 -0.0113 23 6 5.5116 0.2804 0.1237 24 1 5.9383 1.2502 0.3332 25 6 6.3368 -0.8269 -0.0063 26 7 5.8172 -2.0078 -0.2618 27 14 8.1860 -0.6408 0.1816 28 1 8.4959 -0.1197 1.5372 29 1 8.8375 -1.9628 -0.0009 30 1 8.6945 0.3077 -0.8416 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 0.2155 2.3144 -0.0014 35 1 0.2895 4.9468 -0.6624 36 1 1.0248 6.8411 0.6873 37 1 2.5126 7.5763 2.4817 38 1 3.0602 4.5694 4.2097 39 1 4.7576 4.2024 5.9497 40 1 6.4787 5.9050 6.3771 41 1 4.8059 8.3604 3.2842 42 1 3.8276 4.6398 -0.0005 43 1 5.1539 2.5738 0.0000 44 1 6.3943 -2.7822 -0.3523 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096533306.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:11 Heat of formation + Delta-G solvation = 25.075663 kcal Electronic energy + Delta-G solvation = -31075.096405 eV Core-core repulsion = 26732.411958 eV Total energy + Delta-G solvation = -4342.684447 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.126 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.69605 -39.58522 -38.84174 -37.50287 -36.78922 -36.18055 -34.69597 -33.08628 -32.18213 -31.49216 -30.13119 -29.49413 -28.43125 -26.48311 -25.41137 -24.42245 -23.92114 -22.34548 -21.53623 -21.31157 -19.55514 -19.00659 -18.03699 -17.90114 -16.75442 -16.50326 -16.29482 -16.00063 -15.55365 -15.26179 -15.10362 -14.79106 -14.49113 -14.29151 -14.17886 -13.99273 -13.74522 -13.61404 -13.44229 -13.34219 -13.30061 -12.96988 -12.76691 -12.57043 -12.29736 -12.07586 -11.69446 -11.61875 -11.49167 -11.39804 -11.10134 -10.88979 -10.67572 -10.52495 -10.46861 -10.37002 -9.66984 -9.46638 -9.22078 -9.14175 -8.72408 -8.37063 -7.78822 -6.72323 -6.47036 -3.99066 0.58403 0.88773 1.21323 2.26803 2.40599 2.54876 2.75131 2.99867 3.13919 3.15305 3.17473 3.38037 3.65828 3.74084 3.95430 4.06978 4.55633 4.57939 4.81838 4.83358 4.99654 5.04182 5.09332 5.14480 5.20761 5.33364 5.45031 5.51259 5.54302 5.58617 5.68612 5.77609 5.87028 5.93883 6.01357 6.14977 6.18074 6.22370 6.29556 6.39216 6.47817 6.64997 6.74942 6.97610 7.09886 7.23271 7.23941 7.32593 7.40612 7.65638 7.94684 8.22568 8.24182 8.97247 9.68935 10.69735 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.007212 B = 0.003226 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3881.218882 B = 8678.199492 C =11612.789109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.305 6.305 3 C 0.042 3.958 4 C -0.134 4.134 5 C -0.161 4.161 6 C 0.036 3.964 7 C -0.268 4.268 8 C 0.540 3.460 9 O -0.489 6.489 10 N -0.680 5.680 11 C 0.155 3.845 12 C -0.086 4.086 13 C -0.099 4.099 14 C -0.088 4.088 15 C -0.017 4.017 16 C 0.261 3.739 17 N -0.423 5.423 18 C -0.104 4.104 19 C -0.016 4.016 20 C -0.219 4.219 21 C 0.152 3.848 22 O -0.155 6.155 23 C -0.388 4.388 24 H 0.093 0.907 25 C 0.041 3.959 26 N -0.852 5.852 27 Si 0.940 3.060 28 H -0.268 1.268 29 H -0.277 1.277 30 H -0.269 1.269 31 H 0.089 0.911 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.408 0.592 38 H 0.148 0.852 39 H 0.138 0.862 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.099 0.901 43 H 0.131 0.869 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.850 16.507 5.773 20.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.219 6.219 3 C -0.003 4.003 4 C -0.154 4.154 5 C -0.163 4.163 6 C 0.017 3.983 7 C -0.289 4.289 8 C 0.332 3.668 9 O -0.363 6.363 10 N -0.326 5.326 11 C 0.060 3.940 12 C -0.107 4.107 13 C -0.117 4.117 14 C -0.109 4.109 15 C -0.021 4.021 16 C -0.055 4.055 17 N -0.099 5.099 18 C -0.127 4.127 19 C -0.035 4.035 20 C -0.239 4.239 21 C 0.096 3.904 22 O -0.057 6.057 23 C -0.463 4.463 24 H 0.111 0.889 25 C -0.165 4.165 26 N -0.485 5.485 27 Si 0.765 3.235 28 H -0.193 1.193 29 H -0.202 1.202 30 H -0.194 1.194 31 H 0.108 0.892 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.135 0.865 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.244 0.756 38 H 0.165 0.835 39 H 0.155 0.845 40 H 0.150 0.850 41 H 0.151 0.849 42 H 0.117 0.883 43 H 0.149 0.851 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.241 16.180 6.120 19.162 hybrid contribution 0.201 0.611 -0.103 0.652 sum -8.041 16.792 6.017 19.566 Atomic orbital electron populations 1.22857 0.80612 1.02778 1.00098 1.86226 1.19196 1.26464 1.90018 1.17938 0.89339 0.84383 1.08622 1.20653 0.97986 0.90904 1.05832 1.18011 0.92794 0.91226 1.14221 1.22349 0.93284 0.91207 0.91482 1.22482 1.05965 1.00587 0.99896 1.18650 0.81247 0.84273 0.82626 1.91026 1.55292 1.21789 1.68222 1.43583 1.41115 1.12433 1.35457 1.17494 0.90581 0.95559 0.90320 1.21636 0.99616 0.97032 0.92441 1.21061 0.94035 0.99010 0.97641 1.21149 0.98986 0.91930 0.98865 1.15645 0.93887 0.92349 1.00186 1.25687 0.93143 0.93083 0.93547 1.81242 1.10152 1.10087 1.08386 1.20825 0.93130 1.00412 0.98299 1.20501 0.91886 0.96568 0.94516 1.20724 1.00334 0.90834 1.11977 1.18851 0.88274 0.87572 0.95712 1.84009 1.19591 1.25644 1.76436 1.21382 0.78790 0.96767 1.49407 0.88940 1.25332 1.00446 0.94330 0.96366 1.70039 1.36284 0.99044 1.43164 0.85790 0.80357 0.78054 0.79342 1.19336 1.20193 1.19393 0.89219 0.93726 0.93713 0.86498 0.85778 0.85673 0.75591 0.83476 0.84455 0.85024 0.84904 0.88289 0.85109 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.81 101.05 0.99 1.48 16 2 O -0.30 -6.68 10.28 -34.19 -0.35 -7.03 16 3 C 0.04 0.93 6.70 -39.12 -0.26 0.67 16 4 C -0.13 -2.42 8.77 -38.99 -0.34 -2.76 16 5 C -0.16 -2.72 4.43 -105.04 -0.46 -3.19 16 6 C 0.04 0.44 9.79 -37.18 -0.36 0.07 16 7 C -0.27 -2.77 9.88 -37.52 -0.37 -3.14 16 8 C 0.54 6.69 6.63 -13.06 -0.09 6.61 16 9 O -0.49 -8.17 10.02 5.15 0.05 -8.12 16 10 N -0.68 -6.22 5.32 -11.21 -0.06 -6.27 16 11 C 0.16 1.58 6.26 -83.77 -0.52 1.06 16 12 C -0.09 -0.98 8.67 -39.30 -0.34 -1.32 16 13 C -0.10 -0.96 10.02 -39.68 -0.40 -1.35 16 14 C -0.09 -0.78 9.75 -39.14 -0.38 -1.16 16 15 C -0.02 -0.16 5.73 -106.96 -0.61 -0.77 16 16 C 0.26 2.81 15.33 -22.48 -0.34 2.47 16 17 N -0.42 -5.48 18.54 41.83 0.78 -4.70 16 18 C -0.10 -0.91 9.67 -38.96 -0.38 -1.29 16 19 C -0.02 -0.30 6.74 -39.12 -0.26 -0.57 16 20 C -0.22 -4.88 9.10 -39.49 -0.36 -5.24 16 21 C 0.15 3.79 6.67 -38.76 -0.26 3.53 16 22 O -0.15 -4.53 9.52 -13.95 -0.13 -4.66 16 23 C -0.39 -10.91 9.42 30.91 0.29 -10.62 16 24 H 0.09 2.41 5.31 -52.49 -0.28 2.13 16 25 C 0.04 1.13 5.49 -17.51 -0.10 1.03 16 26 N -0.85 -25.07 13.67 55.48 0.76 -24.31 16 27 Si 0.94 20.54 29.55 -169.99 -5.02 15.52 16 28 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 29 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 30 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 31 H 0.09 1.15 8.14 -51.92 -0.42 0.72 16 32 H 0.04 0.59 7.66 -51.93 -0.40 0.20 16 33 H 0.04 0.58 7.66 -51.93 -0.40 0.18 16 34 H 0.12 1.72 6.28 -52.49 -0.33 1.39 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 36 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 37 H 0.41 2.25 8.80 -40.82 -0.36 1.89 16 38 H 0.15 1.95 6.33 -52.48 -0.33 1.62 16 39 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 40 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 42 H 0.10 1.70 7.24 -52.49 -0.38 1.32 16 43 H 0.13 2.93 5.72 -52.49 -0.30 2.63 16 44 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 388.83 15.07 5.86 5.86 Total: -1.00 -35.35 388.83 -7.13 -42.48 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -4.45 Total: 5.76 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -4.56 Total: -14.51 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 1.47 Total: -35.29 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.43 Total: -19.81 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.35 -7.13 -42.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096533306.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.556 kcal (2) G-P(sol) polarization free energy of solvation -35.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds