Wall clock time and date at job start Tue Mar 31 2020 06:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35949 * 116.99703 * 2 1 4 4 C 1.38075 * 120.00462 * 359.97438 * 3 2 1 5 5 C 1.39976 * 119.83964 * 180.02562 * 4 3 2 6 6 C 1.46961 * 120.07862 * 180.02562 * 5 4 3 7 7 C 1.35046 * 120.00015 * 134.97855 * 6 5 4 8 8 C 1.46212 * 120.00438 * 347.18812 * 7 6 5 9 9 O 1.21738 * 119.99551 * 352.81891 * 8 7 6 10 10 N 1.34771 * 120.00570 * 172.81805 * 8 7 6 11 11 C 1.39841 * 120.00373 * 183.12046 * 10 8 7 12 12 C 1.39024 * 120.00088 * 323.85923 * 11 10 8 13 13 C 1.38208 * 120.23395 * 179.72151 * 12 11 10 14 14 C 1.38010 * 120.23110 * 0.55105 * 13 12 11 15 15 C 1.39643 * 119.99301 * 359.72269 * 14 13 12 16 16 C 1.43202 * 120.11394 * 179.97438 * 15 14 13 17 17 N 9.43417 * 141.86780 * 294.36365 * 5 1 2 18 18 C 1.38613 * 120.00187 * 144.12733 * 11 10 8 19 19 C 1.40033 * 119.84627 * 359.97438 * 5 4 3 20 20 C 1.37649 * 119.99714 * 0.02562 * 19 5 4 21 21 C 1.39064 * 120.16099 * 0.27249 * 20 19 5 22 22 O 1.35615 * 119.92018 * 179.70157 * 21 20 19 23 23 C 1.34758 * 116.99950 * 6.43968 * 22 21 20 24 24 H 1.07996 * 120.00165 * 6.40776 * 23 22 21 25 25 C 1.38706 * 119.99839 * 186.40144 * 23 22 21 26 26 N 1.31519 * 120.00092 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99761 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.47305 * 60.00265 * 27 25 23 29 29 H 1.48505 * 109.46934 * 179.97438 * 27 25 23 30 30 H 1.48496 * 109.47272 * 300.00372 * 27 25 23 31 31 H 1.09008 * 109.47144 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47248 * 300.00305 * 1 2 3 33 33 H 1.09001 * 109.46957 * 60.00446 * 1 2 3 34 34 H 1.08002 * 120.07964 * 359.97438 * 4 3 2 35 35 H 1.07999 * 119.99733 * 314.97629 * 6 5 4 36 36 H 1.08005 * 119.99713 * 167.18624 * 7 6 5 37 37 H 0.97008 * 119.99563 * 3.11784 * 10 8 7 38 38 H 1.08006 * 119.87920 * 0.02562 * 12 11 10 39 39 H 1.08005 * 119.88021 * 180.27598 * 13 12 11 40 40 H 1.07996 * 120.00605 * 179.74778 * 14 13 12 41 41 H 1.08005 * 120.11313 * 359.97438 * 18 11 10 42 42 H 1.07992 * 120.00417 * 180.02562 * 19 5 4 43 43 H 1.07993 * 119.92188 * 179.97438 * 20 19 5 44 44 H 0.96998 * 119.99634 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2941 2.3694 -0.0005 5 6 1.9331 3.6148 -0.0011 6 6 1.1379 4.8506 -0.0011 7 6 1.4680 5.8660 0.8258 8 6 2.4255 5.6453 1.9086 9 8 2.8255 4.5207 2.1475 10 7 2.8652 6.6869 2.6421 11 6 3.8298 6.4857 3.6344 12 6 3.8163 5.3192 4.3906 13 6 4.7708 5.1128 5.3687 14 6 5.7371 6.0683 5.6092 15 6 5.7562 7.2460 4.8592 16 6 6.7574 8.2394 5.1070 17 7 7.5518 9.0269 5.3039 18 6 4.7960 7.4518 3.8679 19 6 3.3319 3.6803 -0.0005 20 6 4.0752 2.5218 0.0000 21 6 3.4405 1.2844 -0.0057 22 8 4.1775 0.1461 -0.0113 23 6 5.5116 0.2804 0.1237 24 1 5.9383 1.2502 0.3332 25 6 6.3368 -0.8269 -0.0063 26 7 5.8172 -2.0078 -0.2618 27 14 8.1860 -0.6408 0.1816 28 1 8.4959 -0.1197 1.5372 29 1 8.8375 -1.9628 -0.0009 30 1 8.6945 0.3077 -0.8416 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 0.2155 2.3144 -0.0014 35 1 0.2895 4.9468 -0.6624 36 1 1.0248 6.8411 0.6873 37 1 2.5126 7.5763 2.4817 38 1 3.0602 4.5694 4.2097 39 1 4.7576 4.2024 5.9497 40 1 6.4787 5.9050 6.3771 41 1 4.8059 8.3604 3.2842 42 1 3.8276 4.6398 -0.0005 43 1 5.1539 2.5738 0.0000 44 1 6.3943 -2.7822 -0.3523 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096533306.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:10 Heat of formation + Delta-G solvation = 1.765056 kcal Electronic energy + Delta-G solvation = -31076.107228 eV Core-core repulsion = 26732.411958 eV Total energy + Delta-G solvation = -4343.695270 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.126 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.66082 -41.08075 -39.83071 -39.19967 -37.92813 -37.41053 -35.66214 -34.53315 -33.86805 -32.29478 -31.17413 -30.97067 -29.76253 -27.79302 -27.29881 -25.39528 -24.88624 -23.35518 -23.15768 -22.48897 -20.64017 -19.87608 -19.82202 -19.34419 -18.14485 -17.62592 -17.21235 -17.00064 -16.86033 -16.57908 -16.44594 -16.29794 -15.79526 -15.52860 -15.20484 -15.17404 -15.06098 -14.99061 -14.76272 -14.55981 -14.20633 -13.99028 -13.89802 -13.83533 -13.45750 -13.43498 -13.06351 -12.91228 -12.75051 -12.69013 -12.46187 -12.36305 -12.18983 -11.97289 -11.79579 -11.38946 -11.29939 -10.85331 -10.66224 -10.24661 -9.95422 -9.41815 -9.10460 -8.44372 -8.34893 -6.07941 -0.24015 -0.08700 0.33831 0.68742 1.10057 1.33426 1.45691 1.50024 1.54778 1.89175 2.18482 2.18620 2.43201 2.65387 2.83879 2.87055 2.92871 3.21022 3.48109 3.83191 3.93585 4.04168 4.12438 4.14763 4.18978 4.27983 4.37449 4.43015 4.46991 4.54430 4.62619 4.66251 4.74188 4.79783 4.82203 5.03460 5.12105 5.15374 5.18067 5.25412 5.38916 5.40660 5.49574 5.55031 5.62317 5.83144 5.92925 5.98932 6.10566 6.38888 6.59484 6.72235 6.99707 7.34190 7.84505 8.78822 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.007212 B = 0.003226 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3881.218882 B = 8678.199492 C =11612.789109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.349 6.349 3 C 0.030 3.970 4 C -0.135 4.135 5 C -0.118 4.118 6 C 0.007 3.993 7 C -0.222 4.222 8 C 0.528 3.472 9 O -0.540 6.540 10 N -0.659 5.659 11 C 0.143 3.857 12 C -0.103 4.103 13 C -0.107 4.107 14 C -0.080 4.080 15 C -0.022 4.022 16 C 0.284 3.716 17 N -0.461 5.461 18 C -0.088 4.088 19 C -0.028 4.028 20 C -0.220 4.220 21 C 0.094 3.906 22 O -0.220 6.220 23 C -0.411 4.411 24 H 0.096 0.904 25 C -0.021 4.021 26 N -0.918 5.918 27 Si 1.016 2.984 28 H -0.259 1.259 29 H -0.269 1.269 30 H -0.256 1.256 31 H 0.106 0.894 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.159 0.841 35 H 0.173 0.827 36 H 0.183 0.817 37 H 0.430 0.570 38 H 0.123 0.877 39 H 0.146 0.854 40 H 0.151 0.849 41 H 0.160 0.840 42 H 0.118 0.882 43 H 0.115 0.885 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.142 21.607 5.964 25.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.264 6.264 3 C -0.015 4.015 4 C -0.153 4.153 5 C -0.119 4.119 6 C -0.012 4.012 7 C -0.242 4.242 8 C 0.320 3.680 9 O -0.417 6.417 10 N -0.306 5.306 11 C 0.048 3.952 12 C -0.124 4.124 13 C -0.125 4.125 14 C -0.102 4.102 15 C -0.026 4.026 16 C -0.031 4.031 17 N -0.137 5.137 18 C -0.111 4.111 19 C -0.046 4.046 20 C -0.239 4.239 21 C 0.043 3.957 22 O -0.126 6.126 23 C -0.488 4.488 24 H 0.113 0.887 25 C -0.219 4.219 26 N -0.555 5.555 27 Si 0.834 3.166 28 H -0.183 1.183 29 H -0.193 1.193 30 H -0.181 1.181 31 H 0.124 0.876 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.176 0.824 35 H 0.190 0.810 36 H 0.200 0.800 37 H 0.270 0.730 38 H 0.141 0.859 39 H 0.164 0.836 40 H 0.168 0.832 41 H 0.178 0.822 42 H 0.136 0.864 43 H 0.133 0.867 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.599 21.407 6.324 24.711 hybrid contribution 0.467 -0.444 -0.002 0.644 sum -10.132 20.963 6.322 24.126 Atomic orbital electron populations 1.23236 0.77227 1.04737 1.02014 1.86169 1.22906 1.27156 1.90174 1.18330 0.88853 0.85939 1.08392 1.21145 0.99847 0.89806 1.04550 1.18665 0.92534 0.93342 1.07356 1.22596 0.94982 0.88936 0.94692 1.23020 1.02370 1.02015 0.96778 1.19259 0.81366 0.84081 0.83332 1.91052 1.57164 1.24028 1.69486 1.43357 1.40199 1.12885 1.34204 1.17525 0.91489 0.95516 0.90698 1.21599 0.99825 0.97309 0.93692 1.21191 0.93990 0.99728 0.97596 1.21347 0.98708 0.91290 0.98806 1.15702 0.93934 0.92209 1.00769 1.25723 0.92509 0.92423 0.92417 1.81276 1.11362 1.11367 1.09710 1.20999 0.91807 1.00680 0.97604 1.20690 0.93046 0.95839 0.95044 1.20802 1.00011 0.91555 1.11565 1.19494 0.89840 0.87690 0.98676 1.83967 1.19899 1.27734 1.81043 1.21754 0.79438 0.97281 1.50280 0.88678 1.26570 1.05727 0.93654 0.95959 1.70192 1.38141 1.00073 1.47144 0.84706 0.73566 0.78482 0.79797 1.18342 1.19297 1.18071 0.87586 0.91886 0.91300 0.82354 0.80969 0.80023 0.73030 0.85865 0.83585 0.83165 0.82238 0.86373 0.86746 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.64 9.81 113.37 1.11 1.76 16 2 O -0.35 -16.00 10.28 -79.00 -0.81 -16.81 16 3 C 0.03 1.36 6.70 22.57 0.15 1.51 16 4 C -0.13 -4.60 8.77 22.65 0.20 -4.40 16 5 C -0.12 -3.64 4.43 -20.14 -0.09 -3.73 16 6 C 0.01 0.13 9.79 23.82 0.23 0.36 16 7 C -0.22 -3.06 9.88 23.61 0.23 -2.83 16 8 C 0.53 10.90 6.63 86.31 0.57 11.47 16 9 O -0.54 -17.13 10.02 -4.47 -0.04 -17.18 16 10 N -0.66 -9.21 5.32 -307.58 -1.64 -10.84 16 11 C 0.14 2.52 6.26 38.14 0.24 2.76 16 12 C -0.10 -2.26 8.67 22.45 0.19 -2.07 16 13 C -0.11 -1.97 10.02 22.21 0.22 -1.75 16 14 C -0.08 -1.28 9.75 22.56 0.22 -1.06 16 15 C -0.02 -0.36 5.73 -21.38 -0.12 -0.48 16 16 C 0.28 5.51 15.33 88.34 1.35 6.86 16 17 N -0.46 -11.20 18.54 19.00 0.35 -10.85 16 18 C -0.09 -1.26 9.67 22.67 0.22 -1.04 16 19 C -0.03 -1.02 6.74 22.57 0.15 -0.87 16 20 C -0.22 -10.36 9.10 22.33 0.20 -10.16 16 21 C 0.09 5.06 6.67 22.80 0.15 5.21 16 22 O -0.22 -14.20 9.52 -6.56 -0.06 -14.26 16 23 C -0.41 -25.38 9.42 67.93 0.64 -24.74 16 24 H 0.10 5.46 5.31 -2.91 -0.02 5.44 16 25 C -0.02 -1.28 5.49 84.85 0.47 -0.81 16 26 N -0.92 -58.78 13.67 21.62 0.30 -58.48 16 27 Si 1.02 44.84 29.55 68.60 2.03 46.87 16 28 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 29 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 30 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 31 H 0.11 2.65 8.14 -2.38 -0.02 2.63 16 32 H 0.06 1.56 7.66 -2.39 -0.02 1.54 16 33 H 0.07 1.63 7.66 -2.39 -0.02 1.61 16 34 H 0.16 4.00 6.28 -2.91 -0.02 3.98 16 35 H 0.17 1.67 8.06 -2.91 -0.02 1.64 16 36 H 0.18 0.64 8.06 -2.91 -0.02 0.62 16 37 H 0.43 2.21 8.80 -92.70 -0.82 1.40 16 38 H 0.12 3.32 6.33 -2.91 -0.02 3.30 16 39 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 40 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 41 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 42 H 0.12 3.83 7.24 -2.91 -0.02 3.80 16 43 H 0.11 5.58 5.72 -2.91 -0.02 5.57 16 44 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 Total: -1.00 -90.73 388.83 6.74 -83.98 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.27 Total: 21.60 kcal Atomic # 6 Polarization: -30.38 SS G_CDS: 6.35 Total: -24.03 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -0.99 Total: -80.17 kcal Atomic # 8 Polarization: -47.33 SS G_CDS: -0.92 Total: -48.25 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -90.73 6.74 -83.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096533306.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.748 kcal (2) G-P(sol) polarization free energy of solvation -90.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds