Wall clock time and date at job start Tue Mar 31 2020 05:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35944 * 116.99949 * 2 1 4 4 C 1.38053 * 120.00135 * 359.97438 * 3 2 1 5 5 C 1.40061 * 119.83549 * 180.02562 * 4 3 2 6 6 C 1.46771 * 120.08543 * 180.02562 * 5 4 3 7 7 C 1.35787 * 119.99957 * 201.63616 * 6 5 4 8 8 S 1.77486 * 127.96700 * 7.55028 * 7 6 5 9 9 C 1.77225 * 94.57125 * 179.97438 * 8 7 6 10 10 O 1.21635 * 126.55303 * 180.02562 * 9 8 7 11 11 N 1.33786 * 106.89080 * 0.02562 * 9 8 7 12 12 C 1.46505 * 120.24057 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47086 * 299.97568 * 12 11 9 14 14 C 1.52998 * 109.47120 * 59.97336 * 12 11 9 15 15 C 1.32264 * 119.52057 * 359.67499 * 11 9 8 16 16 O 1.21707 * 122.52405 * 180.35634 * 15 11 9 17 17 C 1.40120 * 119.82336 * 359.77648 * 5 4 3 18 18 C 1.37626 * 119.99157 * 0.47775 * 17 5 4 19 19 C 1.39068 * 120.16980 * 359.49698 * 18 17 5 20 20 O 1.35613 * 119.91173 * 180.25223 * 19 18 17 21 21 C 1.34754 * 117.00306 * 354.35217 * 20 19 18 22 22 H 1.08000 * 119.99726 * 356.25353 * 21 20 19 23 23 C 1.38680 * 120.00149 * 176.24861 * 21 20 19 24 24 N 1.31535 * 120.00281 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00111 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.46986 * 90.00321 * 25 23 21 27 27 H 1.48494 * 109.47363 * 210.00274 * 25 23 21 28 28 H 1.48500 * 109.47265 * 330.00618 * 25 23 21 29 29 H 1.09003 * 109.46911 * 299.99583 * 1 2 3 30 30 H 1.09003 * 109.47181 * 59.99654 * 1 2 3 31 31 H 1.08994 * 109.47306 * 179.97438 * 1 2 3 32 32 H 1.08000 * 120.08033 * 0.04713 * 4 3 2 33 33 H 1.07999 * 120.00210 * 21.64353 * 6 5 4 34 34 H 1.09001 * 109.47316 * 179.97438 * 12 11 9 35 35 H 1.09002 * 109.47053 * 300.00417 * 13 12 11 36 36 H 1.09001 * 109.47255 * 59.99702 * 13 12 11 37 37 H 1.08999 * 109.47602 * 179.97438 * 13 12 11 38 38 H 1.09001 * 109.47030 * 59.99970 * 14 12 11 39 39 H 1.09001 * 109.47212 * 180.02562 * 14 12 11 40 40 H 1.09006 * 109.47446 * 300.00233 * 14 12 11 41 41 H 1.08006 * 120.00239 * 180.25099 * 17 5 4 42 42 H 1.08001 * 119.91353 * 179.77161 * 18 17 5 43 43 H 0.97000 * 120.00286 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2943 2.3691 -0.0005 5 6 1.9338 3.6152 -0.0011 6 6 1.1398 4.8496 -0.0011 7 6 1.6917 6.0119 -0.4352 8 16 3.2704 6.2481 -1.2111 9 6 3.0803 8.0013 -1.3872 10 8 3.8827 8.7710 -1.8803 11 7 1.8856 8.3162 -0.8740 12 6 1.4278 9.7079 -0.8704 13 6 2.4082 10.5652 -0.0675 14 6 1.3572 10.2253 -2.3085 15 6 1.1178 7.3611 -0.3764 16 8 0.0195 7.5850 0.0978 17 6 3.3335 3.6802 0.0037 18 6 4.0760 2.5214 -0.0011 19 6 3.4408 1.2843 -0.0001 20 8 4.1776 0.1458 0.0004 21 6 5.5130 0.2812 -0.1183 22 1 5.9453 1.2594 -0.2690 23 6 6.3323 -0.8354 -0.0470 24 7 5.8059 -2.0268 0.1361 25 14 8.1835 -0.6478 -0.2123 26 1 8.7809 -0.4311 1.1300 27 1 8.7540 -1.8791 -0.8151 28 1 8.4873 0.5162 -1.0830 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2157 2.3141 -0.0002 33 1 0.1167 4.8336 0.3443 34 1 0.4390 9.7639 -0.4151 35 1 2.4586 10.1965 0.9570 36 1 3.3970 10.5092 -0.5228 37 1 2.0679 11.6007 -0.0652 38 1 0.6587 9.6145 -2.8805 39 1 1.0170 11.2609 -2.3058 40 1 2.3460 10.1693 -2.7638 41 1 3.8296 4.6396 0.0074 42 1 5.1548 2.5730 -0.0012 43 1 6.3789 -2.8079 0.1857 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096838612.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:45 Heat of formation + Delta-G solvation = -67.793376 kcal Electronic energy + Delta-G solvation = -29423.978211 eV Core-core repulsion = 25142.303428 eV Total energy + Delta-G solvation = -4281.674783 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.102 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.74752 -39.91644 -38.79582 -37.88957 -36.81317 -36.15288 -34.11718 -33.00759 -32.32128 -29.92145 -28.89861 -27.55672 -26.86319 -25.88454 -25.07728 -24.62059 -22.24926 -21.76010 -20.62460 -19.64965 -18.79766 -18.42177 -17.68225 -17.05832 -16.73292 -16.30427 -15.76943 -15.61292 -15.35928 -15.29500 -14.83003 -14.57818 -14.30254 -14.27226 -14.17853 -13.81261 -13.74404 -13.53399 -13.40172 -12.94641 -12.57425 -12.40060 -12.09400 -11.98503 -11.96086 -11.70584 -11.60898 -11.44802 -11.37415 -11.25666 -11.03702 -10.91314 -10.63502 -10.37817 -10.32955 -10.00755 -9.87845 -9.63942 -9.16898 -8.38950 -7.99608 -7.07679 -6.83553 -4.29179 0.28162 0.87275 1.51975 1.70047 1.99788 2.31220 2.62645 2.90923 2.96837 3.00340 3.03058 3.68610 3.79160 4.10495 4.22401 4.52974 4.68356 4.72533 4.75240 4.78246 5.00473 5.05769 5.24676 5.28991 5.38181 5.43135 5.43343 5.46752 5.49976 5.64261 5.64793 5.72115 5.74710 5.89028 5.92468 6.03789 6.10585 6.28893 6.58211 6.65049 6.77657 6.88584 6.90531 7.02010 7.27696 7.48939 7.57403 7.91096 8.58706 9.24636 10.30768 Molecular weight = 363.10amu Principal moments of inertia in cm(-1) A = 0.012659 B = 0.002597 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.256880 B =10778.517570 C =12694.458539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.302 6.302 3 C 0.055 3.945 4 C -0.127 4.127 5 C -0.191 4.191 6 C 0.122 3.878 7 C -0.299 4.299 8 S -0.002 6.002 9 C 0.511 3.489 10 O -0.449 6.449 11 N -0.567 5.567 12 C 0.119 3.881 13 C -0.167 4.167 14 C -0.167 4.167 15 C 0.566 3.434 16 O -0.495 6.495 17 C -0.045 4.045 18 C -0.223 4.223 19 C 0.152 3.848 20 O -0.133 6.133 21 C -0.384 4.384 22 H 0.103 0.897 23 C 0.042 3.958 24 N -0.833 5.833 25 Si 0.948 3.052 26 H -0.268 1.268 27 H -0.273 1.273 28 H -0.261 1.261 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.127 0.873 33 H 0.146 0.854 34 H 0.110 0.890 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.127 0.873 42 H 0.141 0.859 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.075 14.757 -1.049 16.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.216 6.216 3 C 0.010 3.990 4 C -0.147 4.147 5 C -0.193 4.193 6 C 0.097 3.903 7 C -0.414 4.414 8 S 0.235 5.765 9 C 0.194 3.806 10 O -0.324 6.324 11 N -0.312 5.312 12 C 0.015 3.985 13 C -0.225 4.225 14 C -0.225 4.225 15 C 0.357 3.643 16 O -0.371 6.371 17 C -0.066 4.066 18 C -0.242 4.242 19 C 0.093 3.907 20 O -0.031 6.031 21 C -0.458 4.458 22 H 0.121 0.879 23 C -0.167 4.167 24 N -0.463 5.463 25 Si 0.771 3.229 26 H -0.193 1.193 27 H -0.198 1.198 28 H -0.186 1.186 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.111 0.889 32 H 0.145 0.855 33 H 0.163 0.837 34 H 0.128 0.872 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.144 0.856 42 H 0.159 0.841 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.070 13.814 -1.405 15.582 hybrid contribution -0.395 1.104 0.323 1.217 sum -7.466 14.919 -1.082 16.717 Atomic orbital electron populations 1.22944 0.79945 1.03268 1.00498 1.86242 1.19764 1.26011 1.89607 1.17990 0.89279 0.84684 1.07037 1.20795 0.98675 0.90523 1.04659 1.18024 0.92662 0.90947 1.17649 1.21812 0.97314 0.88390 0.82820 1.23099 1.00564 0.96127 1.21629 1.86697 1.19736 1.01058 1.69014 1.23048 0.82253 0.96086 0.79252 1.90825 1.44236 1.54552 1.42810 1.46508 1.18406 1.11033 1.55289 1.21498 1.00361 0.78275 0.98349 1.22178 1.00505 0.99744 1.00064 1.22180 1.03782 1.01727 0.94800 1.17534 0.84535 0.85097 0.77098 1.90834 1.18544 1.84457 1.43308 1.21162 0.92409 0.97658 0.95385 1.20783 1.00905 0.90336 1.12212 1.18919 0.88286 0.87435 0.96037 1.83978 1.20007 1.26249 1.72889 1.21697 0.78181 0.96293 1.49668 0.87948 1.25517 1.01362 0.94066 0.95721 1.70045 1.37123 0.98578 1.40512 0.85586 0.79074 0.78925 0.79318 1.19348 1.19828 1.18550 0.93304 0.93327 0.88854 0.85482 0.83676 0.87231 0.92117 0.90642 0.90581 0.92145 0.90578 0.90652 0.85554 0.84108 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.37 16 2 O -0.30 -5.89 10.28 -34.18 -0.35 -6.25 16 3 C 0.06 1.08 6.70 -39.12 -0.26 0.82 16 4 C -0.13 -2.02 8.78 -38.97 -0.34 -2.36 16 5 C -0.19 -3.00 5.79 -105.06 -0.61 -3.61 16 6 C 0.12 1.64 9.82 -37.01 -0.36 1.28 16 7 C -0.30 -4.20 6.33 -37.02 -0.23 -4.43 16 8 S 0.00 -0.03 19.07 -107.50 -2.05 -2.08 16 9 C 0.51 7.16 7.66 53.61 0.41 7.57 16 10 O -0.45 -6.80 14.51 5.25 0.08 -6.72 16 11 N -0.57 -7.45 2.43 -113.93 -0.28 -7.72 16 12 C 0.12 1.29 3.18 -67.93 -0.22 1.07 16 13 C -0.17 -1.59 9.14 37.16 0.34 -1.25 16 14 C -0.17 -1.58 9.14 37.16 0.34 -1.24 16 15 C 0.57 8.04 7.62 -13.93 -0.11 7.94 16 16 O -0.49 -7.74 16.60 5.18 0.09 -7.65 16 17 C -0.05 -0.77 8.59 -39.10 -0.34 -1.11 16 18 C -0.22 -4.35 9.11 -39.50 -0.36 -4.71 16 19 C 0.15 3.37 6.67 -38.75 -0.26 3.12 16 20 O -0.13 -3.48 9.52 -13.93 -0.13 -3.61 16 21 C -0.38 -9.67 9.45 30.90 0.29 -9.37 16 22 H 0.10 2.33 5.24 -52.49 -0.28 2.06 16 23 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 24 N -0.83 -22.32 13.67 55.48 0.76 -21.56 16 25 Si 0.95 18.49 29.55 -169.99 -5.02 13.47 16 26 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 27 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 28 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 29 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 30 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.13 1.60 6.28 -52.49 -0.33 1.27 16 33 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.11 1.17 7.00 -51.93 -0.36 0.81 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.83 6.45 -51.93 -0.33 0.49 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.82 6.45 -51.93 -0.33 0.49 16 41 H 0.13 1.97 4.70 -29.77 -0.14 1.83 16 42 H 0.14 2.68 5.67 -52.49 -0.30 2.39 16 43 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 374.41 15.07 5.64 5.64 Total: -1.00 -29.42 374.41 -6.62 -36.04 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -4.54 Total: 4.41 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -0.81 Total: -3.97 kcal Atomic # 7 Polarization: -29.77 SS G_CDS: 0.48 Total: -29.28 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.32 Total: -24.23 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.02 Total: 13.47 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -2.05 Total: -2.08 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.42 -6.62 -36.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096838612.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.748 kcal (2) G-P(sol) polarization free energy of solvation -29.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds