Wall clock time and date at job start Tue Mar 31 2020 06:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35899 * 116.99830 * 2 1 4 4 C 1.38864 * 119.89614 * 180.02562 * 3 2 1 5 5 C 1.37849 * 120.09327 * 179.97438 * 4 3 2 6 6 C 1.39696 * 119.90093 * 0.02562 * 5 4 3 7 7 N 1.36850 * 120.09532 * 179.97438 * 6 5 4 8 8 C 1.30384 * 119.99866 * 134.99781 * 7 6 5 9 9 C 1.47044 * 119.99905 * 179.72475 * 8 7 6 10 10 C 1.39947 * 120.09136 * 359.72057 * 9 8 7 11 11 C 1.37622 * 119.90787 * 179.78825 * 10 9 8 12 12 C 1.39192 * 120.09106 * 0.47172 * 11 10 9 13 13 N 1.39223 * 119.91238 * 179.76466 * 12 11 10 14 14 C 1.46496 * 120.00320 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.46937 * 90.00004 * 14 13 12 16 16 H 1.08001 * 120.00568 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00050 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00125 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 120.00011 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47315 * 89.99657 * 19 17 15 21 21 H 1.48502 * 109.47414 * 209.99852 * 19 17 15 22 22 H 1.48507 * 109.47245 * 329.99917 * 19 17 15 23 23 C 1.46505 * 119.99737 * 0.02562 * 13 12 11 24 24 C 1.52995 * 109.47174 * 90.00177 * 23 13 12 25 25 C 1.47205 * 109.47148 * 180.02562 * 24 23 13 26 26 N 9.15041 * 170.08880 * 319.35317 * 7 1 2 27 27 C 1.39190 * 120.18289 * 359.78501 * 12 11 10 28 28 C 1.37622 * 120.09000 * 359.97438 * 27 12 11 29 29 C 1.39688 * 119.80277 * 0.25175 * 6 5 4 30 30 C 1.37844 * 119.90152 * 359.51120 * 29 6 5 31 31 H 1.08997 * 109.47307 * 60.00063 * 1 2 3 32 32 H 1.09003 * 109.47084 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47342 * 299.99883 * 1 2 3 34 34 H 1.07991 * 119.95746 * 359.97438 * 4 3 2 35 35 H 1.08004 * 120.04837 * 179.97438 * 5 4 3 36 36 H 1.08005 * 119.99914 * 0.02562 * 8 7 6 37 37 H 1.08001 * 120.04999 * 0.03184 * 10 9 8 38 38 H 1.07998 * 119.95717 * 180.26036 * 11 10 9 39 39 H 1.09000 * 109.47273 * 209.99838 * 14 13 12 40 40 H 1.09000 * 109.47156 * 330.00154 * 14 13 12 41 41 H 0.96997 * 120.00101 * 180.02562 * 18 17 15 42 42 H 1.08999 * 109.47073 * 209.99885 * 23 13 12 43 43 H 1.08995 * 109.47147 * 330.00005 * 23 13 12 44 44 H 1.09004 * 109.47322 * 299.99987 * 24 23 13 45 45 H 1.09000 * 109.47661 * 59.99717 * 24 23 13 46 46 H 1.07995 * 119.95792 * 179.97438 * 27 12 11 47 47 H 1.08000 * 120.05017 * 180.02562 * 28 27 12 48 48 H 1.08000 * 120.04682 * 179.74998 * 29 6 5 49 49 H 1.08001 * 119.95274 * 180.23080 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4328 1.2811 -0.0005 5 6 4.0628 2.5072 -0.0011 6 6 3.3039 3.6801 -0.0005 7 7 3.9252 4.8994 -0.0005 8 6 3.5095 5.8429 -0.7987 9 6 4.1732 7.1550 -0.7943 10 6 5.2475 7.3950 0.0698 11 6 5.8688 8.6231 0.0676 12 6 5.4237 9.6288 -0.7855 13 7 6.0517 10.8713 -0.7812 14 6 5.5846 11.9314 -1.6778 15 6 4.5245 12.7463 -0.9827 16 1 4.2280 12.4990 0.0260 17 6 3.9322 13.8070 -1.6348 18 7 3.0066 14.5178 -1.0283 19 14 4.4433 14.2335 -3.3801 20 1 3.5913 13.4884 -4.3415 21 1 4.2794 15.6928 -3.6013 22 1 5.8655 13.8584 -3.5851 23 6 7.1799 11.1186 0.1202 24 6 8.4863 10.7465 -0.5839 25 6 9.6198 10.9944 0.3220 26 7 10.4938 11.1870 1.0247 27 6 4.3521 9.3959 -1.6427 28 6 3.7285 8.1691 -1.6503 29 6 1.9091 3.6045 0.0059 30 6 1.2875 2.3742 0.0014 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 4.0187 0.3739 -0.0005 35 1 5.1415 2.5609 -0.0011 36 1 2.6745 5.6622 -1.4595 37 1 5.5912 6.6164 0.7347 38 1 6.7006 8.8078 0.7311 39 1 6.4216 12.5765 -1.9450 40 1 5.1666 11.4858 -2.5805 41 1 2.5897 15.2638 -1.4872 42 1 7.2022 12.1736 0.3934 43 1 7.0663 10.5128 1.0191 44 1 8.4640 9.6915 -0.8572 45 1 8.5999 11.3523 -1.4829 46 1 4.0094 10.1790 -2.3028 47 1 2.8973 7.9890 -2.3159 48 1 1.3186 4.5087 0.0104 49 1 0.2092 2.3148 0.0026 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096900346.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:52 Heat of formation + Delta-G solvation = 74.948748 kcal Electronic energy + Delta-G solvation = -29721.588720 eV Core-core repulsion = 25614.618689 eV Total energy + Delta-G solvation = -4106.970031 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.169 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.39469 -39.42662 -38.36801 -37.10809 -36.18631 -35.00768 -32.97737 -31.81120 -31.33908 -30.78727 -30.16956 -28.82588 -27.67797 -26.91487 -24.49920 -23.79926 -22.91333 -22.20966 -21.55714 -20.59792 -19.40369 -18.46583 -17.71457 -17.12568 -16.91625 -16.83945 -16.43082 -16.03843 -15.39534 -15.18457 -14.90045 -14.79889 -14.34635 -14.14792 -13.91706 -13.82371 -13.75994 -13.55970 -13.19739 -13.13115 -12.87574 -12.80720 -12.66688 -12.40464 -12.32475 -12.21861 -12.15504 -11.75622 -11.72543 -11.47992 -11.23120 -11.12973 -10.91815 -10.82758 -10.67976 -10.33305 -10.27624 -9.78277 -9.63746 -9.27045 -9.04930 -8.77657 -8.57752 -7.90805 -6.66786 -6.25669 -4.27533 0.63745 1.10372 1.59708 1.90515 2.68335 2.78639 2.79408 2.98512 3.12815 3.19247 3.22545 3.54489 3.60647 4.19772 4.21348 4.30161 4.36637 4.52236 4.61240 4.77869 4.79080 4.85109 4.99990 5.04182 5.05147 5.10414 5.13364 5.21145 5.26998 5.38236 5.41302 5.47075 5.62492 5.71445 5.74702 5.77647 5.94425 6.00776 6.05958 6.10006 6.14385 6.29185 6.35901 6.46866 6.52883 6.58838 6.78469 6.82906 6.96100 7.10738 7.23007 7.37921 7.55959 7.73268 7.99544 8.03250 8.33778 8.81620 9.32628 10.87032 Molecular weight = 363.17amu Principal moments of inertia in cm(-1) A = 0.010703 B = 0.001834 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.354787 B =15265.683823 C =17400.012984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.107 3.893 4 C -0.136 4.136 5 C -0.074 4.074 6 C 0.067 3.933 7 N -0.511 5.511 8 C 0.232 3.768 9 C -0.173 4.173 10 C -0.014 4.014 11 C -0.230 4.230 12 C 0.264 3.736 13 N -0.593 5.593 14 C 0.216 3.784 15 C -0.540 4.540 16 H 0.079 0.921 17 C 0.075 3.925 18 N -0.890 5.890 19 Si 0.871 3.129 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.264 1.264 23 C 0.128 3.872 24 C -0.051 4.051 25 C 0.216 3.784 26 N -0.445 5.445 27 C -0.193 4.193 28 C -0.033 4.033 29 C -0.120 4.120 30 C -0.190 4.190 31 H 0.055 0.945 32 H 0.099 0.901 33 H 0.055 0.945 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.097 0.903 37 H 0.126 0.874 38 H 0.121 0.879 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.266 0.734 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.110 0.890 45 H 0.112 0.888 46 H 0.136 0.864 47 H 0.120 0.880 48 H 0.125 0.875 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.565 -22.258 -2.521 22.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.062 3.938 4 C -0.155 4.155 5 C -0.093 4.093 6 C -0.034 4.034 7 N -0.217 5.217 8 C 0.033 3.967 9 C -0.176 4.176 10 C -0.034 4.034 11 C -0.252 4.252 12 C 0.155 3.845 13 N -0.296 5.296 14 C 0.095 3.905 15 C -0.578 4.578 16 H 0.097 0.903 17 C -0.129 4.129 18 N -0.528 5.528 19 Si 0.697 3.303 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.189 1.189 23 C 0.001 3.999 24 C -0.092 4.092 25 C -0.102 4.102 26 N -0.123 5.123 27 C -0.216 4.216 28 C -0.054 4.054 29 C -0.140 4.140 30 C -0.209 4.209 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.073 0.927 34 H 0.151 0.849 35 H 0.153 0.847 36 H 0.114 0.886 37 H 0.144 0.856 38 H 0.138 0.862 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.076 0.924 42 H 0.110 0.890 43 H 0.098 0.902 44 H 0.128 0.872 45 H 0.130 0.870 46 H 0.154 0.846 47 H 0.138 0.862 48 H 0.143 0.857 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.399 -22.037 -0.840 22.057 hybrid contribution -1.354 0.458 -1.566 2.121 sum -0.955 -21.579 -2.406 21.734 Atomic orbital electron populations 1.23041 0.78505 1.03843 1.01379 1.86051 1.21288 1.27013 1.88968 1.19053 0.92334 0.84045 0.98349 1.20304 0.91241 0.98385 1.05595 1.20819 1.00024 0.89704 0.98793 1.18886 0.91055 0.91601 1.01877 1.68553 1.30922 0.99770 1.22444 1.24325 0.91729 0.90824 0.89794 1.18318 1.02026 0.92711 1.04592 1.20996 0.92268 0.95481 0.94689 1.20610 1.05783 0.94093 1.04760 1.18119 0.90108 0.84843 0.91416 1.46780 1.31204 1.10387 1.41206 1.19807 0.95698 0.85459 0.89499 1.21406 1.20268 1.13131 1.03037 0.90336 1.24894 0.94507 0.95735 0.97749 1.69889 1.25772 1.19467 1.37645 0.86946 0.79663 0.78328 0.85335 1.19844 1.20986 1.18907 1.21227 0.83023 1.03289 0.92320 1.19912 0.87992 1.05113 0.96218 1.29198 0.94217 0.92885 0.93924 1.81288 1.11499 1.09345 1.10141 1.20758 0.98772 0.98200 1.03838 1.20963 0.97094 0.91762 0.95617 1.21534 0.94007 0.97665 1.00782 1.21075 0.99901 0.92072 1.07868 0.92678 0.88307 0.92675 0.84940 0.84745 0.88569 0.85611 0.86161 0.94914 0.94922 0.92364 0.89018 0.90211 0.87174 0.87020 0.84622 0.86184 0.85692 0.85476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.07 10.49 -19.42 -0.20 -3.28 16 3 C 0.11 1.12 6.69 -39.12 -0.26 0.86 16 4 C -0.14 -1.40 9.97 -39.49 -0.39 -1.80 16 5 C -0.07 -0.83 9.99 -39.18 -0.39 -1.22 16 6 C 0.07 0.83 6.17 -84.54 -0.52 0.31 16 7 N -0.51 -6.77 9.51 -9.04 -0.09 -6.86 16 8 C 0.23 2.83 9.85 -14.60 -0.14 2.69 16 9 C -0.17 -2.31 5.87 -105.04 -0.62 -2.92 16 10 C -0.01 -0.19 9.57 -39.17 -0.37 -0.56 16 11 C -0.23 -3.17 9.18 -39.45 -0.36 -3.53 16 12 C 0.26 4.12 6.55 -83.80 -0.55 3.57 16 13 N -0.59 -9.52 2.58 -173.09 -0.45 -9.97 16 14 C 0.22 4.16 3.97 -5.20 -0.02 4.14 16 15 C -0.54 -13.22 9.94 -34.44 -0.34 -13.56 16 16 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 17 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 18 N -0.89 -25.06 13.96 55.43 0.77 -24.29 16 19 Si 0.87 18.75 27.47 -169.99 -4.67 14.08 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.26 -5.28 6.54 56.52 0.37 -4.91 16 23 C 0.13 1.66 5.10 -4.04 -0.02 1.64 16 24 C -0.05 -0.51 6.03 -29.52 -0.18 -0.69 16 25 C 0.22 2.64 15.44 -20.70 -0.32 2.32 16 26 N -0.45 -6.68 18.55 42.23 0.78 -5.89 16 27 C -0.19 -3.05 9.18 -39.45 -0.36 -3.41 16 28 C -0.03 -0.45 9.78 -39.16 -0.38 -0.83 16 29 C -0.12 -1.32 9.18 -39.18 -0.36 -1.68 16 30 C -0.19 -1.88 9.02 -39.49 -0.36 -2.24 16 31 H 0.05 0.27 7.66 -51.93 -0.40 -0.12 16 32 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.28 7.65 -51.93 -0.40 -0.11 16 34 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 35 H 0.13 1.35 8.06 -52.48 -0.42 0.92 16 36 H 0.10 0.97 7.53 -52.48 -0.40 0.58 16 37 H 0.13 1.65 7.54 -52.49 -0.40 1.26 16 38 H 0.12 1.45 6.11 -52.49 -0.32 1.13 16 39 H 0.03 0.61 7.13 -51.93 -0.37 0.24 16 40 H 0.03 0.62 5.60 -51.93 -0.29 0.33 16 41 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.09 1.30 8.07 -51.93 -0.42 0.88 16 43 H 0.08 0.97 6.17 -51.93 -0.32 0.65 16 44 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.14 2.30 6.11 -52.49 -0.32 1.98 16 47 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 48 H 0.13 1.25 7.68 -52.49 -0.40 0.85 16 49 H 0.13 0.97 6.28 -52.49 -0.33 0.64 16 LS Contribution 418.56 15.07 6.31 6.31 Total: -1.00 -30.51 418.56 -9.09 -39.60 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -6.49 Total: 4.24 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -5.06 Total: -13.94 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: 1.02 Total: -47.01 kcal Atomic # 8 Polarization: -3.07 SS G_CDS: -0.20 Total: -3.28 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -4.67 Total: 14.08 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -30.51 -9.09 -39.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096900346.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.550 kcal (2) G-P(sol) polarization free energy of solvation -30.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds