Wall clock time and date at job start Tue Mar 31 2020 06:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 120.00035 * 2 1 4 4 C 1.50703 * 109.46962 * 269.99907 * 3 2 1 5 5 H 1.08000 * 119.99850 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99760 * 179.97438 * 4 3 2 7 7 N 1.31508 * 120.00168 * 0.02562 * 6 4 3 8 8 Si 1.86795 * 119.99717 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47179 * 90.00232 * 8 6 4 10 10 H 1.48498 * 109.47201 * 210.00084 * 8 6 4 11 11 H 1.48504 * 109.47381 * 330.00305 * 8 6 4 12 12 C 1.34775 * 119.99788 * 179.97438 * 2 1 3 13 13 O 1.21287 * 119.99764 * 180.02562 * 12 2 1 14 14 C 1.50694 * 120.00379 * 359.97438 * 12 2 1 15 15 S 1.80997 * 109.47471 * 179.97438 * 14 12 2 16 16 C 1.76200 * 100.00036 * 180.02562 * 15 14 12 17 17 N 1.31441 * 125.93268 * 0.02592 * 16 15 14 18 18 C 1.34384 * 109.63048 * 179.97438 * 17 16 15 19 19 C 1.47259 * 125.61218 * 179.97438 * 18 17 16 20 20 C 1.34688 * 120.00082 * 200.04396 * 19 18 17 21 21 C 1.46553 * 120.00148 * 9.96672 * 20 19 18 22 22 C 1.36394 * 125.34463 * 216.71493 * 21 20 19 23 23 C 1.37735 * 114.38993 * 179.78920 * 22 21 20 24 24 C 1.33708 * 115.21349 * 0.49868 * 23 22 21 25 25 S 1.75816 * 109.99786 * 359.72625 * 24 23 22 26 26 N 1.31754 * 108.77720 * 0.02562 * 18 17 16 27 27 N 1.35220 * 125.92874 * 180.02562 * 16 15 14 28 28 H 0.96995 * 126.71838 * 0.02562 * 27 16 15 29 29 H 1.09004 * 109.46836 * 270.00280 * 1 2 3 30 30 H 1.09005 * 109.47039 * 29.99820 * 1 2 3 31 31 H 1.08991 * 109.47271 * 150.00244 * 1 2 3 32 32 H 1.09002 * 109.47017 * 29.99788 * 3 2 1 33 33 H 1.09000 * 109.47174 * 149.99499 * 3 2 1 34 34 H 0.96998 * 119.99962 * 179.97438 * 7 6 4 35 35 H 1.09008 * 109.47050 * 59.99895 * 14 12 2 36 36 H 1.09002 * 109.47449 * 300.00498 * 14 12 2 37 37 H 1.07999 * 119.99581 * 20.05035 * 19 18 17 38 38 H 1.07998 * 119.99993 * 189.96110 * 20 19 18 39 39 H 1.07996 * 122.80946 * 359.95587 * 22 21 20 40 40 H 1.08002 * 122.39397 * 180.20149 * 23 22 21 41 41 H 1.07999 * 124.99948 * 179.70888 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0974 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5533 3.6181 -0.6732 8 14 3.4380 3.4167 -3.4339 9 1 2.3079 4.2590 -3.9015 10 1 4.6979 4.2002 -3.4961 11 1 3.5561 2.2194 -4.3044 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0017 15 16 2.5615 -3.8480 0.0014 16 6 1.4414 -5.2082 0.0021 17 7 0.1295 -5.1270 0.0022 18 6 -0.3992 -6.3625 0.0022 19 6 -1.8372 -6.6797 0.0028 20 6 -2.2586 -7.8949 0.4026 21 6 -1.3203 -8.8228 1.0401 22 6 -1.3099 -10.1760 0.8692 23 6 -0.3248 -10.8308 1.5747 24 6 0.4582 -10.0458 2.3221 25 16 -0.0354 -8.3670 2.1514 26 7 0.5807 -7.2432 0.0027 27 7 1.7822 -6.5167 0.0026 28 1 2.6808 -6.8820 0.0031 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8899 -0.5137 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1384 0.5139 34 1 4.0302 4.4439 -0.8505 35 1 0.7584 -2.5306 -0.8881 36 1 0.7590 -2.5295 0.8919 37 1 -2.5539 -5.9380 -0.3174 38 1 -3.2880 -8.1856 0.2534 39 1 -2.0134 -10.6907 0.2317 40 1 -0.1971 -11.9024 1.5314 41 1 1.2735 -10.3920 2.9399 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096940032.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:15 Heat of formation + Delta-G solvation = 119.037632 kcal Electronic energy + Delta-G solvation = -26079.332395 eV Core-core repulsion = 22215.378924 eV Total energy + Delta-G solvation = -3863.953471 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 364.077 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.02845 -39.05195 -37.99213 -35.10756 -34.97300 -32.75603 -32.53525 -30.99351 -30.08339 -28.76440 -27.47911 -25.75521 -24.89119 -23.51496 -22.80949 -22.59312 -20.14766 -19.61688 -19.04911 -18.33596 -16.93638 -16.69273 -16.65050 -16.46290 -16.08255 -15.68136 -15.35613 -15.09598 -14.73131 -14.33801 -14.06222 -13.74737 -13.36501 -13.25611 -12.90865 -12.80464 -12.55492 -12.32504 -12.26699 -12.07237 -12.03141 -11.90924 -11.27339 -11.21592 -11.04758 -10.93700 -10.77820 -10.58455 -10.49053 -10.37957 -10.20800 -9.78723 -9.69493 -9.22205 -8.50276 -8.47849 -8.28508 -7.80456 -7.65764 -6.08885 -4.13972 0.14894 0.85064 1.27877 1.42507 1.68928 1.88675 1.94059 2.53221 2.66656 3.04550 3.15976 3.28184 3.35192 3.39852 3.80712 4.05395 4.40738 4.42876 4.52577 4.81957 4.88074 5.11623 5.14549 5.19834 5.25993 5.31678 5.39260 5.62070 5.63787 5.75594 5.87232 5.93779 5.97575 6.08671 6.16437 6.16815 6.28320 6.65784 6.91317 7.34088 7.40934 7.70162 7.86395 8.16143 8.21493 8.74378 8.92779 9.51178 10.99261 Molecular weight = 364.08amu Principal moments of inertia in cm(-1) A = 0.025711 B = 0.001832 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.778982 B =15280.856873 C =15547.292048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.591 5.591 3 C 0.245 3.755 4 C -0.529 4.529 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.520 3.480 13 O -0.529 6.529 14 C -0.137 4.137 15 S 0.083 5.917 16 C 0.248 3.752 17 N -0.526 5.526 18 C 0.237 3.763 19 C -0.066 4.066 20 C -0.050 4.050 21 C -0.165 4.165 22 C -0.121 4.121 23 C -0.141 4.141 24 C -0.230 4.230 25 S 0.173 5.827 26 N -0.273 5.273 27 N -0.464 5.464 28 H 0.444 0.556 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.036 0.964 33 H 0.046 0.954 34 H 0.264 0.736 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.151 0.849 38 H 0.147 0.853 39 H 0.138 0.862 40 H 0.135 0.865 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.877 -26.543 5.206 29.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.323 5.323 3 C 0.126 3.874 4 C -0.568 4.568 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 C 0.304 3.696 13 O -0.407 6.407 14 C -0.289 4.289 15 S 0.310 5.690 16 C -0.138 4.138 17 N -0.259 5.259 18 C -0.044 4.044 19 C -0.088 4.088 20 C -0.075 4.075 21 C -0.283 4.283 22 C -0.152 4.152 23 C -0.172 4.172 24 C -0.367 4.367 25 S 0.441 5.559 26 N -0.104 5.104 27 N -0.185 5.185 28 H 0.290 0.710 29 H 0.067 0.933 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.169 0.831 38 H 0.165 0.835 39 H 0.156 0.844 40 H 0.153 0.847 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -9.727 -25.375 5.895 27.807 hybrid contribution -1.041 -1.131 -1.619 2.232 sum -10.769 -26.505 4.276 28.927 Atomic orbital electron populations 1.21744 0.80889 1.03018 1.00881 1.48077 1.06507 1.07281 1.70463 1.19383 0.92637 0.77562 0.97775 1.21408 1.36805 1.06406 0.92152 0.92345 1.24934 0.95264 0.96351 0.97528 1.69925 1.38222 1.14307 1.30774 0.86480 0.77708 0.78622 0.84527 1.20612 1.21054 1.19844 1.19363 0.87702 0.84074 0.78484 1.90725 1.13192 1.86474 1.50329 1.23885 1.01669 0.94460 1.08901 1.86559 1.01576 0.89656 1.91242 1.26930 0.95771 0.91428 0.99629 1.71196 1.04134 1.24222 1.26341 1.22594 0.94986 0.86535 1.00287 1.21161 0.88490 0.96999 1.02191 1.21441 0.98196 0.91601 0.96223 1.23349 1.02476 0.96799 1.05689 1.20594 1.00605 0.92135 1.01833 1.19926 0.96819 1.00872 0.99552 1.25887 1.06198 0.97138 1.07443 1.84287 1.27644 1.05995 1.37982 1.78709 0.89968 1.17324 1.24442 1.47883 1.09210 1.03202 1.58165 0.70980 0.93274 0.90352 0.92118 0.94601 0.93581 0.92638 0.85974 0.86121 0.83100 0.83531 0.84380 0.84708 0.82385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.18 10.24 59.85 0.61 1.79 16 2 N -0.59 -12.00 2.86 -182.95 -0.52 -12.52 16 3 C 0.25 6.22 5.16 -5.19 -0.03 6.19 16 4 C -0.53 -14.66 9.39 -34.44 -0.32 -14.98 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 8 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.52 10.26 7.69 -10.99 -0.08 10.18 16 13 O -0.53 -12.62 15.44 5.55 0.09 -12.54 16 14 C -0.14 -1.99 4.24 36.00 0.15 -1.83 16 15 S 0.08 1.15 21.45 -107.50 -2.31 -1.16 16 16 C 0.25 3.15 8.30 -89.42 -0.74 2.41 16 17 N -0.53 -7.06 10.60 -11.45 -0.12 -7.18 16 18 C 0.24 2.93 6.79 -156.56 -1.06 1.87 16 19 C -0.07 -0.62 10.24 -37.17 -0.38 -1.00 16 20 C -0.05 -0.41 10.10 -37.49 -0.38 -0.79 16 21 C -0.17 -1.59 5.14 -36.90 -0.19 -1.78 16 22 C -0.12 -1.03 10.18 -40.43 -0.41 -1.45 16 23 C -0.14 -1.17 10.15 -41.35 -0.42 -1.59 16 24 C -0.23 -2.00 11.21 29.14 0.33 -1.68 16 25 S 0.17 1.76 19.09 -107.50 -2.05 -0.29 16 26 N -0.27 -3.32 8.30 31.94 0.27 -3.05 16 27 N -0.46 -5.16 7.47 30.44 0.23 -4.93 16 28 H 0.44 3.65 8.96 -182.37 -1.63 2.02 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 31 H 0.06 0.74 6.44 -51.93 -0.33 0.41 16 32 H 0.04 0.91 8.07 -51.93 -0.42 0.50 16 33 H 0.05 1.31 7.42 -51.93 -0.39 0.93 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 35 H 0.12 1.64 7.40 -51.91 -0.38 1.25 16 36 H 0.12 1.54 8.11 -51.92 -0.42 1.11 16 37 H 0.15 1.10 8.06 -52.49 -0.42 0.67 16 38 H 0.15 0.72 8.06 -52.49 -0.42 0.29 16 39 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 40 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 382.65 15.07 5.77 5.77 Total: -1.00 -34.50 382.65 -12.05 -46.55 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -6.08 Total: -0.81 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -3.02 Total: -1.02 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: 0.58 Total: -53.04 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.09 Total: -12.54 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -4.36 Total: -1.45 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.50 -12.05 -46.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096940032.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.587 kcal (2) G-P(sol) polarization free energy of solvation -34.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds