Wall clock time and date at job start Tue Mar 31 2020 06:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36938 * 119.99638 * 2 1 4 4 H 1.08003 * 119.99673 * 144.21995 * 3 2 1 5 5 C 1.38804 * 120.00179 * 324.21300 * 3 2 1 6 6 N 1.31617 * 120.00194 * 157.89745 * 5 3 2 7 7 Si 1.86801 * 120.00304 * 337.89717 * 5 3 2 8 8 H 1.48505 * 109.46970 * 95.58232 * 7 5 3 9 9 H 1.48495 * 109.47334 * 215.58695 * 7 5 3 10 10 H 1.48505 * 109.47062 * 335.58711 * 7 5 3 11 11 S 1.65602 * 119.99748 * 180.02562 * 2 1 3 12 12 O 1.42095 * 106.40284 * 336.45529 * 11 2 1 13 13 O 1.42098 * 106.39760 * 203.54151 * 11 2 1 14 14 C 1.76200 * 107.21844 * 90.00177 * 11 2 1 15 15 C 1.38237 * 119.99213 * 269.71996 * 14 11 2 16 16 C 1.38300 * 119.98963 * 179.74705 * 15 14 11 17 17 Br 1.89097 * 120.01089 * 180.27298 * 16 15 14 18 18 C 1.38343 * 119.97859 * 0.50921 * 16 15 14 19 19 C 1.38194 * 119.99129 * 359.76617 * 18 16 15 20 20 N 1.48007 * 119.99722 * 180.02562 * 19 18 16 21 21 O 1.21802 * 119.99858 * 179.97438 * 20 19 18 22 22 O 1.21798 * 119.99883 * 359.97339 * 20 19 18 23 23 C 1.38215 * 119.99671 * 89.99921 * 14 11 2 24 24 H 1.08999 * 109.47048 * 267.54341 * 1 2 3 25 25 H 1.09001 * 109.47092 * 27.53944 * 1 2 3 26 26 H 1.08996 * 109.47357 * 147.54484 * 1 2 3 27 27 H 0.96997 * 120.00549 * 180.02562 * 6 5 3 28 28 H 1.08010 * 120.00494 * 0.02562 * 15 14 11 29 29 H 1.08001 * 120.00584 * 179.79026 * 18 16 15 30 30 H 1.07996 * 119.98756 * 359.97127 * 23 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.0768 1.2742 0.5469 5 6 1.6521 2.2745 -0.7029 6 7 2.0273 3.4940 -0.3795 7 14 0.4502 2.0090 -2.1080 8 1 -0.9392 2.1637 -1.6068 9 1 0.7061 3.0102 -3.1743 10 1 0.6280 0.6417 -2.6598 11 16 2.2930 -1.4342 -0.0006 12 8 1.4113 -2.4067 0.5434 13 8 3.5759 -1.1570 0.5440 14 6 2.5538 -1.8851 -1.6839 15 6 1.6220 -2.6654 -2.3426 16 6 1.8242 -3.0149 -3.6653 17 35 0.5462 -4.0758 -4.5692 18 6 2.9641 -2.5923 -4.3255 19 6 3.8979 -1.8171 -3.6645 20 7 5.1172 -1.3644 -4.3709 21 8 5.9399 -0.6807 -3.7885 22 8 5.2978 -1.6755 -5.5345 23 6 3.6927 -1.4635 -2.3437 24 1 -0.3633 -0.0440 1.0267 25 1 -0.3633 0.9112 -0.4752 26 1 -0.3634 -0.8671 -0.5515 27 1 1.6793 4.2547 -0.8705 28 1 0.7340 -2.9982 -1.8256 29 1 3.1241 -2.8679 -5.3574 30 1 4.4224 -0.8573 -1.8275 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097114273.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:34 Heat of formation + Delta-G solvation = -26.951795 kcal Electronic energy + Delta-G solvation = -22874.474515 eV Core-core repulsion = 19040.618121 eV Total energy + Delta-G solvation = -3833.856394 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 363.961 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.14674 -39.40001 -36.52607 -36.22307 -36.18470 -34.74963 -32.95350 -32.56558 -32.05574 -29.76197 -26.92643 -26.62298 -24.27236 -23.40018 -22.43131 -19.65119 -18.66343 -18.50713 -17.51132 -17.47717 -16.94953 -16.85730 -16.04437 -15.86658 -15.68018 -14.33630 -14.25321 -13.80896 -13.57813 -13.18171 -13.11882 -12.68789 -12.55285 -12.23071 -11.52011 -11.44008 -11.33006 -11.22938 -11.16370 -11.08106 -11.04693 -10.94213 -10.79974 -10.67536 -10.48706 -10.31999 -9.88886 -9.47913 -9.27995 -8.56630 -7.15616 -4.50580 -0.21283 0.43665 0.99008 1.17922 1.30119 1.47913 2.70056 2.85434 2.88723 2.89380 3.58611 3.81379 4.28325 4.36457 4.47034 4.52859 4.64589 4.71239 4.89385 5.32289 5.46032 5.53187 5.54062 5.80708 5.88319 5.96334 6.16737 6.41063 6.54763 6.93806 7.68700 7.79622 8.34048 8.45571 9.88003 Molecular weight = 363.96amu Principal moments of inertia in cm(-1) A = 0.009753 B = 0.005391 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2870.174803 B = 5192.904740 C = 6042.659150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.811 5.811 3 C -0.222 4.222 4 H 0.136 0.864 5 C 0.061 3.939 6 N -0.791 5.791 7 Si 0.884 3.116 8 H -0.260 1.260 9 H -0.279 1.279 10 H -0.259 1.259 11 S 2.481 3.519 12 O -0.993 6.993 13 O -0.964 6.964 14 C -0.644 4.644 15 C 0.038 3.962 16 C -0.119 4.119 17 Br -0.024 7.024 18 C -0.007 4.007 19 C -0.062 4.062 20 N 0.032 4.968 21 O -0.144 6.144 22 O -0.167 6.167 23 C 0.052 3.948 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.291 0.709 28 H 0.159 0.841 29 H 0.161 0.839 30 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.661 -8.653 -8.021 13.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.633 5.633 3 C -0.377 4.377 4 H 0.153 0.847 5 C -0.159 4.159 6 N -0.426 5.426 7 Si 0.710 3.290 8 H -0.186 1.186 9 H -0.205 1.205 10 H -0.183 1.183 11 S 2.581 3.419 12 O -0.983 6.983 13 O -0.954 6.954 14 C -0.718 4.718 15 C 0.017 3.983 16 C -0.199 4.199 17 Br 0.061 6.939 18 C -0.029 4.029 19 C -0.147 4.147 20 N 0.552 4.448 21 O -0.363 6.363 22 O -0.381 6.381 23 C 0.032 3.968 24 H 0.090 0.910 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.102 0.898 28 H 0.177 0.823 29 H 0.179 0.821 30 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -6.449 -10.019 -7.435 14.045 hybrid contribution 0.078 0.327 -1.781 1.813 sum -6.371 -9.692 -9.217 14.815 Atomic orbital electron populations 1.21660 0.80215 1.01237 1.02732 1.54553 1.11899 1.19914 1.76902 1.19807 1.10510 0.83206 1.24173 0.84723 1.25998 0.97676 0.95118 0.97097 1.69791 1.38052 0.98649 1.36065 0.86799 0.80748 0.79917 0.81566 1.18627 1.20474 1.18263 1.14902 0.74664 0.75169 0.77195 1.93342 1.64955 1.62089 1.77866 1.93387 1.41139 1.84057 1.76779 1.33285 0.98807 1.06161 1.33508 1.21348 0.97434 0.88414 0.91122 1.21794 0.96715 1.05042 0.96378 1.96761 1.53530 1.67005 1.76568 1.20936 0.89864 0.91212 1.00840 1.21235 0.89671 1.08784 0.94965 1.43476 1.01736 0.98768 1.00796 1.94590 1.38780 1.34467 1.68487 1.94505 1.82590 1.60367 1.00634 1.21029 0.95347 0.90466 0.89990 0.90964 0.92384 0.92142 0.89825 0.82305 0.82144 0.80911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.50 8.98 59.85 0.54 2.04 16 2 N -0.81 -16.53 2.90 -66.69 -0.19 -16.73 16 3 C -0.22 -4.99 9.60 -15.06 -0.14 -5.14 16 4 H 0.14 3.29 7.58 -52.48 -0.40 2.89 16 5 C 0.06 1.36 5.31 -17.43 -0.09 1.27 16 6 N -0.79 -18.32 13.97 55.49 0.78 -17.54 16 7 Si 0.88 16.96 24.93 -169.99 -4.24 12.72 16 8 H -0.26 -4.62 6.68 56.52 0.38 -4.24 16 9 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 10 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 11 S 2.48 50.97 5.61 -107.50 -0.60 50.37 16 12 O -0.99 -21.09 16.40 -57.18 -0.94 -22.03 16 13 O -0.96 -22.48 16.20 -57.18 -0.93 -23.41 16 14 C -0.64 -11.68 5.97 -39.59 -0.24 -11.91 16 15 C 0.04 0.60 9.26 -39.56 -0.37 0.23 16 16 C -0.12 -1.70 6.22 -39.52 -0.25 -1.94 16 17 Br -0.02 -0.28 33.70 -68.01 -2.29 -2.57 16 18 C -0.01 -0.11 9.30 -39.56 -0.37 -0.47 16 19 C -0.06 -1.05 6.85 -79.96 -0.55 -1.59 16 20 N 0.03 0.56 4.45 33.96 0.15 0.71 16 21 O -0.14 -2.65 18.45 -29.46 -0.54 -3.20 16 22 O -0.17 -2.82 18.45 -29.46 -0.54 -3.36 16 23 C 0.05 0.94 9.03 -39.58 -0.36 0.58 16 24 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.06 0.99 3.13 -51.93 -0.16 0.83 16 26 H 0.06 0.89 7.88 -51.93 -0.41 0.48 16 27 H 0.29 6.13 8.31 -40.82 -0.34 5.79 16 28 H 0.16 2.26 7.61 -52.48 -0.40 1.86 16 29 H 0.16 1.96 7.61 -52.49 -0.40 1.56 16 30 H 0.17 3.16 7.17 -52.49 -0.38 2.78 16 LS Contribution 303.91 15.07 4.58 4.58 Total: -1.00 -25.91 303.91 -8.32 -34.23 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -1.73 Total: 3.16 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -1.82 Total: -16.94 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: 0.73 Total: -33.56 kcal Atomic # 8 Polarization: -49.04 SS G_CDS: -2.95 Total: -51.99 kcal Atomic # 14 Polarization: 16.96 SS G_CDS: -4.24 Total: 12.72 kcal Atomic # 16 Polarization: 50.97 SS G_CDS: -0.60 Total: 50.37 kcal Atomic # 35 Polarization: -0.28 SS G_CDS: -2.29 Total: -2.57 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -25.91 -8.32 -34.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097114273.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.278 kcal (2) G-P(sol) polarization free energy of solvation -25.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds