Wall clock time and date at job start Tue Mar 31 2020 06:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36938 * 119.99638 * 2 1 4 4 H 1.08003 * 119.99673 * 144.21995 * 3 2 1 5 5 C 1.38804 * 120.00179 * 324.21300 * 3 2 1 6 6 N 1.31617 * 120.00194 * 157.89745 * 5 3 2 7 7 Si 1.86801 * 120.00304 * 337.89717 * 5 3 2 8 8 H 1.48505 * 109.46970 * 95.58232 * 7 5 3 9 9 H 1.48495 * 109.47334 * 215.58695 * 7 5 3 10 10 H 1.48505 * 109.47062 * 335.58711 * 7 5 3 11 11 S 1.65602 * 119.99748 * 180.02562 * 2 1 3 12 12 O 1.42095 * 106.40284 * 336.45529 * 11 2 1 13 13 O 1.42098 * 106.39760 * 203.54151 * 11 2 1 14 14 C 1.76200 * 107.21844 * 90.00177 * 11 2 1 15 15 C 1.38237 * 119.99213 * 269.71996 * 14 11 2 16 16 C 1.38300 * 119.98963 * 179.74705 * 15 14 11 17 17 Br 1.89097 * 120.01089 * 180.27298 * 16 15 14 18 18 C 1.38343 * 119.97859 * 0.50921 * 16 15 14 19 19 C 1.38194 * 119.99129 * 359.76617 * 18 16 15 20 20 N 1.48007 * 119.99722 * 180.02562 * 19 18 16 21 21 O 1.21802 * 119.99858 * 179.97438 * 20 19 18 22 22 O 1.21798 * 119.99883 * 359.97339 * 20 19 18 23 23 C 1.38215 * 119.99671 * 89.99921 * 14 11 2 24 24 H 1.08999 * 109.47048 * 267.54341 * 1 2 3 25 25 H 1.09001 * 109.47092 * 27.53944 * 1 2 3 26 26 H 1.08996 * 109.47357 * 147.54484 * 1 2 3 27 27 H 0.96997 * 120.00549 * 180.02562 * 6 5 3 28 28 H 1.08010 * 120.00494 * 0.02562 * 15 14 11 29 29 H 1.08001 * 120.00584 * 179.79026 * 18 16 15 30 30 H 1.07996 * 119.98756 * 359.97127 * 23 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.0768 1.2742 0.5469 5 6 1.6521 2.2745 -0.7029 6 7 2.0273 3.4940 -0.3795 7 14 0.4502 2.0090 -2.1080 8 1 -0.9392 2.1637 -1.6068 9 1 0.7061 3.0102 -3.1743 10 1 0.6280 0.6417 -2.6598 11 16 2.2930 -1.4342 -0.0006 12 8 1.4113 -2.4067 0.5434 13 8 3.5759 -1.1570 0.5440 14 6 2.5538 -1.8851 -1.6839 15 6 1.6220 -2.6654 -2.3426 16 6 1.8242 -3.0149 -3.6653 17 35 0.5462 -4.0758 -4.5692 18 6 2.9641 -2.5923 -4.3255 19 6 3.8979 -1.8171 -3.6645 20 7 5.1172 -1.3644 -4.3709 21 8 5.9399 -0.6807 -3.7885 22 8 5.2978 -1.6755 -5.5345 23 6 3.6927 -1.4635 -2.3437 24 1 -0.3633 -0.0440 1.0267 25 1 -0.3633 0.9112 -0.4752 26 1 -0.3634 -0.8671 -0.5515 27 1 1.6793 4.2547 -0.8705 28 1 0.7340 -2.9982 -1.8256 29 1 3.1241 -2.8679 -5.3574 30 1 4.4224 -0.8573 -1.8275 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097114273.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:33 Heat of formation + Delta-G solvation = -43.010936 kcal Electronic energy + Delta-G solvation = -22875.170892 eV Core-core repulsion = 19040.618121 eV Total energy + Delta-G solvation = -3834.552771 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 363.961 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.52006 -40.72757 -38.03422 -37.89484 -37.76866 -36.60603 -34.17892 -34.15633 -33.41884 -30.93546 -28.39376 -27.99185 -25.90352 -24.80603 -23.76113 -21.09459 -20.18654 -19.97999 -19.13448 -18.88659 -18.49047 -18.26971 -17.55825 -17.35582 -17.12646 -15.96296 -15.53222 -15.19932 -15.00391 -14.70467 -14.66069 -14.06773 -13.95221 -13.64269 -13.03928 -12.91698 -12.87717 -12.80211 -12.64060 -12.57898 -12.51296 -12.47532 -12.27631 -12.14308 -11.93359 -11.63765 -11.26466 -11.00029 -10.46183 -10.16167 -8.74777 -6.23449 -1.55332 -0.91024 -0.46617 -0.16308 -0.10119 0.20070 1.19954 1.32084 1.39255 1.53934 2.04910 2.22390 2.66664 2.90461 3.09835 3.21240 3.26672 3.34362 3.53115 3.82092 4.11798 4.18371 4.28290 4.42559 4.52478 4.58920 4.84007 5.03946 5.09260 5.37835 6.08161 6.29127 6.71697 6.82944 8.35054 Molecular weight = 363.96amu Principal moments of inertia in cm(-1) A = 0.009753 B = 0.005391 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2870.174803 B = 5192.904740 C = 6042.659150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.826 5.826 3 C -0.265 4.265 4 H 0.092 0.908 5 C 0.033 3.967 6 N -0.850 5.850 7 Si 0.924 3.076 8 H -0.233 1.233 9 H -0.288 1.288 10 H -0.248 1.248 11 S 2.543 3.457 12 O -0.991 6.991 13 O -0.996 6.996 14 C -0.664 4.664 15 C 0.044 3.956 16 C -0.117 4.117 17 Br 0.017 6.983 18 C 0.015 3.985 19 C -0.071 4.071 20 N 0.031 4.969 21 O -0.194 6.194 22 O -0.128 6.128 23 C 0.042 3.958 24 H 0.084 0.916 25 H 0.061 0.939 26 H 0.090 0.910 27 H 0.293 0.707 28 H 0.181 0.819 29 H 0.193 0.807 30 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.937 -11.927 -10.661 17.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.651 5.651 3 C -0.414 4.414 4 H 0.110 0.890 5 C -0.182 4.182 6 N -0.486 5.486 7 Si 0.746 3.254 8 H -0.158 1.158 9 H -0.215 1.215 10 H -0.171 1.171 11 S 2.642 3.358 12 O -0.981 6.981 13 O -0.986 6.986 14 C -0.743 4.743 15 C 0.024 3.976 16 C -0.198 4.198 17 Br 0.102 6.898 18 C -0.006 4.006 19 C -0.155 4.155 20 N 0.551 4.449 21 O -0.400 6.400 22 O -0.354 6.354 23 C 0.021 3.979 24 H 0.102 0.898 25 H 0.079 0.921 26 H 0.109 0.891 27 H 0.103 0.897 28 H 0.199 0.801 29 H 0.210 0.790 30 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -8.700 -13.133 -9.922 18.618 hybrid contribution 0.776 0.815 -1.160 1.616 sum -7.924 -12.318 -11.082 18.366 Atomic orbital electron populations 1.22005 0.78346 1.02744 1.04263 1.53966 1.13171 1.18679 1.79298 1.19176 1.10035 0.85177 1.27021 0.89008 1.26406 0.99063 0.94342 0.98368 1.69865 1.41326 0.99446 1.37947 0.86184 0.80436 0.79894 0.78841 1.15785 1.21478 1.17086 1.11078 0.73605 0.74337 0.76751 1.93371 1.65043 1.61599 1.78089 1.93386 1.42674 1.84733 1.77800 1.32568 1.00621 1.09371 1.31709 1.21634 0.97064 0.86940 0.91997 1.21965 0.97238 1.04632 0.95944 1.96835 1.51792 1.65645 1.75528 1.21355 0.88600 0.88745 1.01923 1.21231 0.90002 1.09647 0.94638 1.43568 1.01890 0.98632 1.00836 1.94628 1.39841 1.36644 1.68929 1.94465 1.82068 1.58544 1.00305 1.20919 0.95256 0.90634 0.91063 0.89801 0.92115 0.89118 0.89670 0.80127 0.79024 0.82476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.32 8.98 127.77 1.15 3.47 16 2 N -0.83 -33.79 2.90 -364.90 -1.06 -34.85 16 3 C -0.26 -12.66 9.60 84.03 0.81 -11.85 16 4 H 0.09 4.99 7.58 -2.91 -0.02 4.97 16 5 C 0.03 1.53 5.31 84.86 0.45 1.98 16 6 N -0.85 -42.27 13.97 21.65 0.30 -41.97 16 7 Si 0.92 34.40 24.93 68.60 1.71 36.11 16 8 H -0.23 -7.59 6.68 99.48 0.66 -6.93 16 9 H -0.29 -11.03 7.11 99.48 0.71 -10.32 16 10 H -0.25 -8.60 7.11 99.48 0.71 -7.89 16 11 S 2.54 102.71 5.61 -56.49 -0.32 102.39 16 12 O -0.99 -39.60 16.40 -128.00 -2.10 -41.69 16 13 O -1.00 -47.69 16.20 -128.00 -2.07 -49.77 16 14 C -0.66 -22.84 5.97 22.26 0.13 -22.70 16 15 C 0.04 1.23 9.26 22.28 0.21 1.43 16 16 C -0.12 -2.79 6.22 22.31 0.14 -2.65 16 17 Br 0.02 0.30 33.70 -20.37 -0.69 -0.39 16 18 C 0.01 0.36 9.30 22.28 0.21 0.57 16 19 C -0.07 -2.22 6.85 36.37 0.25 -1.97 16 20 N 0.03 1.05 4.45 -46.48 -0.21 0.85 16 21 O -0.19 -7.28 18.45 18.88 0.35 -6.93 16 22 O -0.13 -3.93 18.45 18.89 0.35 -3.58 16 23 C 0.04 1.48 9.03 22.27 0.20 1.69 16 24 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 25 H 0.06 1.97 3.13 -2.39 -0.01 1.97 16 26 H 0.09 2.35 7.88 -2.39 -0.02 2.33 16 27 H 0.29 13.25 8.31 -92.71 -0.77 12.48 16 28 H 0.18 4.21 7.61 -2.91 -0.02 4.19 16 29 H 0.19 3.56 7.61 -2.91 -0.02 3.54 16 30 H 0.16 6.04 7.17 -2.91 -0.02 6.02 16 Total: -1.00 -58.04 303.91 0.98 -57.06 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: 1.17 Total: 12.82 kcal Atomic # 6 Polarization: -33.59 SS G_CDS: 3.54 Total: -30.05 kcal Atomic # 7 Polarization: -75.01 SS G_CDS: -0.96 Total: -75.97 kcal Atomic # 8 Polarization: -98.49 SS G_CDS: -3.48 Total: -101.97 kcal Atomic # 14 Polarization: 34.40 SS G_CDS: 1.71 Total: 36.11 kcal Atomic # 16 Polarization: 102.71 SS G_CDS: -0.32 Total: 102.39 kcal Atomic # 35 Polarization: 0.30 SS G_CDS: -0.69 Total: -0.39 kcal Total: -58.04 0.98 -57.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097114273.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.047 kcal (2) G-P(sol) polarization free energy of solvation -58.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds