Wall clock time and date at job start Tue Mar 31 2020 05:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30816 * 1 3 3 Si 1.86806 * 119.99885 * 2 1 4 4 H 1.48494 * 109.47480 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46762 * 300.00283 * 3 2 1 6 6 H 1.48502 * 109.47209 * 59.99520 * 3 2 1 7 7 C 1.39943 * 120.00365 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99943 * 163.71065 * 7 2 1 9 9 C 1.41393 * 119.99622 * 343.70275 * 7 2 1 10 10 C 1.40727 * 120.24910 * 334.19500 * 9 7 2 11 11 C 1.37597 * 119.74539 * 180.27468 * 10 9 7 12 12 C 1.38657 * 120.24978 * 359.70140 * 11 10 9 13 13 C 1.38610 * 120.50210 * 0.02729 * 12 11 10 14 14 C 1.37645 * 120.24497 * 359.97253 * 13 12 11 15 15 C 1.50703 * 120.12440 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.46756 * 264.99748 * 15 14 13 17 17 O 1.34922 * 119.99404 * 180.02562 * 16 15 14 18 18 N 1.29035 * 120.00320 * 0.02562 * 16 15 14 19 19 S 1.65598 * 120.00247 * 179.97438 * 18 16 15 20 20 O 1.42098 * 106.40159 * 66.45686 * 19 18 16 21 21 O 1.42108 * 106.40361 * 293.54290 * 19 18 16 22 22 C 1.76198 * 107.22069 * 180.02562 * 19 18 16 23 23 C 1.38240 * 119.97277 * 89.99925 * 22 19 18 24 24 C 1.38203 * 120.02296 * 180.23341 * 23 22 19 25 25 C 1.38460 * 119.97285 * 359.50906 * 24 23 22 26 26 F 1.35099 * 120.02655 * 180.20672 * 25 24 23 27 27 C 1.38460 * 119.94941 * 0.49396 * 25 24 23 28 28 C 1.38199 * 119.97310 * 359.73547 * 27 25 24 29 29 H 0.97000 * 120.00307 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.12720 * 0.02562 * 10 9 7 31 31 H 1.08008 * 119.87366 * 179.72907 * 11 10 9 32 32 H 1.08000 * 119.74764 * 180.02562 * 12 11 10 33 33 H 1.07995 * 119.87706 * 179.97438 * 13 12 11 34 34 H 1.08998 * 109.47070 * 145.00010 * 15 14 13 35 35 H 1.08997 * 109.47232 * 25.00086 * 15 14 13 36 36 H 0.96692 * 114.00476 * 359.97438 * 17 16 15 37 37 H 1.07993 * 119.99312 * 359.96146 * 23 22 19 38 38 H 1.07996 * 120.01225 * 179.72550 * 24 23 22 39 39 H 1.08001 * 120.01245 * 179.71744 * 27 25 24 40 40 H 1.08000 * 119.98524 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7021 1.3466 -0.0006 5 1 1.8833 2.3965 -1.2125 6 1 1.8833 2.3966 1.2124 7 6 2.0079 -1.2119 -0.0005 8 1 3.0555 -1.2305 -0.2629 9 6 1.3436 -2.4119 0.3426 10 6 0.2103 -2.3815 1.1763 11 6 -0.4248 -3.5561 1.5082 12 6 0.0440 -4.7660 1.0194 13 6 1.1559 -4.8074 0.1929 14 6 1.8071 -3.6449 -0.1522 15 6 3.0154 -3.6930 -1.0515 16 6 4.2662 -3.7188 -0.2112 17 8 5.4769 -3.7624 -0.8050 18 7 4.1792 -3.6992 1.0761 19 16 5.5535 -3.7281 1.9994 20 8 6.2273 -2.5011 1.7547 21 8 6.1526 -4.9993 1.7878 22 6 5.0489 -3.6914 3.6872 23 6 4.8156 -4.8739 4.3641 24 6 4.4151 -4.8462 5.6866 25 6 4.2575 -3.6338 6.3364 26 9 3.8700 -3.6056 7.6303 27 6 4.4914 -2.4501 5.6573 28 6 4.8872 -2.4801 4.3335 29 1 -0.4850 0.8400 0.0004 30 1 -0.1570 -1.4401 1.5575 31 1 -1.2922 -3.5355 2.1515 32 1 -0.4610 -5.6830 1.2848 33 1 1.5127 -5.7554 -0.1817 34 1 3.0265 -2.8116 -1.6926 35 1 2.9736 -4.5906 -1.6685 36 1 5.4409 -3.7745 -1.7712 37 1 4.9421 -5.8196 3.8582 38 1 4.2286 -5.7701 6.2140 39 1 4.3643 -1.5036 6.1618 40 1 5.0693 -1.5569 3.8035 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097138732.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:11 Heat of formation + Delta-G solvation = -95.364142 kcal Electronic energy + Delta-G solvation = -30334.381849 eV Core-core repulsion = 25928.051203 eV Total energy + Delta-G solvation = -4406.330646 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 363.077 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.15114 -39.53880 -38.92788 -37.59829 -36.77930 -35.45708 -34.11751 -33.67866 -31.54731 -31.30464 -30.80541 -29.52342 -27.13964 -25.10921 -23.28447 -23.25233 -21.95061 -21.00397 -19.89613 -19.52505 -18.41622 -17.81774 -17.29420 -16.98679 -16.63450 -16.44569 -15.79704 -15.63188 -15.25783 -14.72972 -14.64337 -14.49508 -13.75254 -13.72291 -13.58889 -13.46686 -13.41320 -13.33297 -12.64935 -12.62636 -12.46491 -11.86304 -11.76649 -11.68664 -11.63946 -11.58660 -11.24292 -11.18412 -11.04045 -10.75472 -10.70241 -10.42634 -10.25476 -9.64432 -9.55457 -9.44787 -9.26024 -9.21947 -9.17575 -7.38762 -7.36127 -6.79993 -4.42182 0.50040 0.83083 1.10650 1.81110 2.72076 2.89839 3.05954 3.12520 3.15650 3.22483 3.48243 3.68869 3.90140 4.00565 4.02227 4.45424 4.58285 4.72350 4.85733 4.86201 5.10747 5.41329 5.54027 5.54571 5.72184 5.74579 5.83165 5.88401 5.98008 6.02282 6.15160 6.22924 6.44423 6.66291 6.68953 7.02020 7.07866 7.23010 7.25058 7.35328 7.58002 7.84893 7.98854 8.07878 8.23933 8.58697 8.84646 8.94663 10.13519 Molecular weight = 363.08amu Principal moments of inertia in cm(-1) A = 0.008064 B = 0.004418 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3471.466053 B = 6335.868005 C = 6813.251506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.079 3.921 3 Si 0.895 3.105 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.459 4.459 8 H 0.075 0.925 9 C 0.136 3.864 10 C -0.158 4.158 11 C -0.105 4.105 12 C -0.239 4.239 13 C -0.075 4.075 14 C -0.180 4.180 15 C -0.046 4.046 16 C 0.497 3.503 17 O -0.523 6.523 18 N -0.900 5.900 19 S 2.630 3.370 20 O -0.973 6.973 21 O -0.981 6.981 22 C -0.650 4.650 23 C 0.013 3.987 24 C -0.177 4.177 25 C 0.150 3.850 26 F -0.134 7.134 27 C -0.175 4.175 28 C 0.017 3.983 29 H 0.280 0.720 30 H 0.116 0.884 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.117 0.883 35 H 0.098 0.902 36 H 0.423 0.577 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.489 -5.218 2.331 8.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.197 1.197 7 C -0.489 4.489 8 H 0.093 0.907 9 C 0.134 3.866 10 C -0.177 4.177 11 C -0.123 4.123 12 C -0.258 4.258 13 C -0.093 4.093 14 C -0.182 4.182 15 C -0.086 4.086 16 C 0.277 3.723 17 O -0.320 6.320 18 N -0.760 5.760 19 S 2.724 3.276 20 O -0.962 6.962 21 O -0.970 6.970 22 C -0.738 4.738 23 C -0.007 4.007 24 C -0.196 4.196 25 C 0.130 3.870 26 F -0.112 7.112 27 C -0.194 4.194 28 C -0.002 4.002 29 H 0.091 0.909 30 H 0.134 0.866 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.134 0.866 35 H 0.116 0.884 36 H 0.281 0.719 37 H 0.167 0.833 38 H 0.162 0.838 39 H 0.163 0.837 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.962 -5.057 3.227 9.190 hybrid contribution 0.174 0.859 0.282 0.921 sum 7.136 -4.197 3.509 8.992 Atomic orbital electron populations 1.69813 1.07467 1.29079 1.35399 1.25852 0.94650 1.01125 0.92268 0.86462 0.81453 0.81491 0.78698 1.18089 1.19963 1.19671 1.19507 0.97160 0.90965 1.41222 0.90693 1.17252 0.90569 0.91069 0.87703 1.21287 0.98957 0.96622 1.00863 1.20682 0.98560 0.93507 0.99570 1.20286 1.01582 0.96111 1.07809 1.20259 0.95767 0.95408 0.97895 1.18791 0.98929 0.94246 1.06235 1.20174 0.88284 1.04031 0.96109 1.24390 0.85628 0.73111 0.89216 1.84921 1.31412 1.86363 1.29272 1.74385 1.50333 1.40890 1.10352 1.03775 0.73818 0.74228 0.75743 1.93566 1.72898 1.45813 1.83966 1.93544 1.75732 1.42926 1.84767 1.30429 1.19249 0.99299 1.24781 1.20782 0.89367 0.97361 0.93148 1.21201 1.05212 0.97223 0.96014 1.17957 0.95627 0.94944 0.78451 1.91524 1.87963 1.97441 1.34284 1.21242 1.04710 0.97733 0.95748 1.20853 0.88888 0.97147 0.93313 0.90945 0.86603 0.89757 0.89755 0.89666 0.86567 0.88445 0.71864 0.83329 0.83793 0.83686 0.83067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.20 10.95 55.55 0.61 -18.59 16 2 C 0.08 1.85 5.16 -17.35 -0.09 1.76 16 3 Si 0.89 17.95 29.59 -169.99 -5.03 12.92 16 4 H -0.26 -5.24 7.11 56.52 0.40 -4.83 16 5 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.46 -10.89 8.14 -37.74 -0.31 -11.19 16 8 H 0.07 1.71 6.67 -52.48 -0.35 1.36 16 9 C 0.14 3.24 5.56 -106.83 -0.59 2.64 16 10 C -0.16 -3.87 8.69 -38.88 -0.34 -4.21 16 11 C -0.10 -2.35 10.02 -39.66 -0.40 -2.75 16 12 C -0.24 -5.03 10.05 -39.29 -0.39 -5.42 16 13 C -0.08 -1.51 9.66 -39.66 -0.38 -1.89 16 14 C -0.18 -3.70 4.33 -103.91 -0.45 -4.15 16 15 C -0.05 -0.70 5.03 -29.03 -0.15 -0.85 16 16 C 0.50 8.12 7.52 -13.45 -0.10 8.02 16 17 O -0.52 -6.93 12.34 -17.20 -0.21 -7.15 16 18 N -0.90 -17.21 9.71 32.47 0.32 -16.90 16 19 S 2.63 49.53 4.78 -107.50 -0.51 49.02 16 20 O -0.97 -20.34 17.14 -58.39 -1.00 -21.34 16 21 O -0.98 -19.41 17.14 -58.37 -1.00 -20.41 16 22 C -0.65 -10.94 5.97 -39.58 -0.24 -11.18 16 23 C 0.01 0.19 9.52 -39.59 -0.38 -0.19 16 24 C -0.18 -2.32 10.03 -39.51 -0.40 -2.72 16 25 C 0.15 2.05 7.30 -39.42 -0.29 1.76 16 26 F -0.13 -1.76 17.27 2.25 0.04 -1.72 16 27 C -0.17 -2.41 10.03 -39.51 -0.40 -2.81 16 28 C 0.02 0.27 9.52 -39.59 -0.38 -0.11 16 29 H 0.28 6.22 8.30 -40.82 -0.34 5.89 16 30 H 0.12 2.97 6.20 -52.49 -0.33 2.65 16 31 H 0.08 1.73 8.06 -52.48 -0.42 1.30 16 32 H 0.08 1.60 8.06 -52.49 -0.42 1.17 16 33 H 0.09 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.12 1.66 7.08 -51.93 -0.37 1.29 16 35 H 0.10 1.10 8.05 -51.93 -0.42 0.68 16 36 H 0.42 2.47 8.82 45.56 0.40 2.87 16 37 H 0.15 1.97 7.61 -52.49 -0.40 1.57 16 38 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 39 H 0.15 1.62 8.06 -52.49 -0.42 1.19 16 40 H 0.15 2.28 7.62 -52.49 -0.40 1.88 16 LS Contribution 367.40 15.07 5.54 5.54 Total: -1.00 -33.18 367.40 -9.64 -42.81 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -3.11 Total: 9.08 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: -5.27 Total: -33.27 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.92 Total: -35.49 kcal Atomic # 8 Polarization: -46.68 SS G_CDS: -2.21 Total: -48.90 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.92 kcal Atomic # 16 Polarization: 49.53 SS G_CDS: -0.51 Total: 49.02 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.18 -9.64 -42.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097138732.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.549 kcal (2) G-P(sol) polarization free energy of solvation -33.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds