Wall clock time and date at job start Tue Mar 31 2020 05:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86802 * 120.00113 * 2 1 4 4 H 1.48496 * 109.47044 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47288 * 300.00184 * 3 2 1 6 6 H 1.48498 * 109.46731 * 60.00049 * 3 2 1 7 7 C 1.40054 * 119.99886 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99445 * 179.97438 * 7 2 1 9 9 C 1.46374 * 119.99800 * 0.02562 * 7 2 1 10 10 O 1.21685 * 120.00130 * 359.97438 * 9 7 2 11 11 N 1.34782 * 119.99699 * 179.97438 * 9 7 2 12 12 C 1.46491 * 120.00002 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.47311 * 180.02562 * 12 11 9 14 14 O 1.42904 * 109.47163 * 65.00039 * 13 12 11 15 15 C 1.35887 * 117.00239 * 180.02562 * 14 13 12 16 16 C 1.39854 * 119.56506 * 0.02562 * 15 14 13 17 17 C 1.35984 * 120.92959 * 180.28061 * 16 15 14 18 18 C 1.40597 * 119.73316 * 359.45226 * 17 16 15 19 19 C 1.40516 * 121.21583 * 180.24498 * 18 17 16 20 20 C 1.36188 * 119.66319 * 180.31137 * 19 18 17 21 21 Br 1.89099 * 119.50707 * 179.97438 * 20 19 18 22 22 C 1.39448 * 120.97648 * 359.97438 * 20 19 18 23 23 C 1.36071 * 120.97117 * 0.02562 * 22 20 19 24 24 C 1.40585 * 119.67217 * 359.97438 * 23 22 20 25 25 C 1.36568 * 119.56941 * 180.02562 * 15 14 13 26 26 H 0.96998 * 119.99890 * 0.02562 * 1 2 3 27 27 H 0.97001 * 119.99849 * 0.02562 * 11 9 7 28 28 H 1.09003 * 109.47354 * 59.99917 * 12 11 9 29 29 H 1.09003 * 109.47357 * 299.99885 * 12 11 9 30 30 H 1.08997 * 109.46920 * 305.00125 * 13 12 11 31 31 H 1.08994 * 109.47371 * 184.99838 * 13 12 11 32 32 H 1.08002 * 119.53160 * 359.97438 * 16 15 14 33 33 H 1.08002 * 120.13418 * 179.70220 * 17 16 15 34 34 H 1.07995 * 120.16457 * 0.33454 * 19 18 17 35 35 H 1.08004 * 119.51410 * 179.97438 * 22 20 19 36 36 H 1.08000 * 120.16532 * 180.02562 * 23 22 20 37 37 H 1.07998 * 120.18533 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7007 1.3463 -0.0006 5 1 1.8820 2.3965 -1.2125 6 1 1.8820 2.3964 1.2125 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0017 10 8 0.0582 -2.4805 -0.0017 11 7 1.9490 -3.6478 -0.0027 12 6 1.2165 -4.9164 -0.0033 13 6 2.2107 -6.0793 -0.0038 14 8 2.9530 -6.0720 1.2173 15 6 3.8860 -7.0468 1.3780 16 6 4.0765 -7.9932 0.3661 17 6 4.9984 -8.9838 0.5002 18 6 5.7812 -9.0547 1.6660 19 6 6.7463 -10.0620 1.8350 20 6 7.4827 -10.1046 2.9798 21 35 8.7797 -11.4625 3.2029 22 6 7.2943 -9.1618 3.9898 23 6 6.3690 -8.1725 3.8606 24 6 5.5900 -8.0965 2.6928 25 6 4.6253 -7.0895 2.5255 26 1 -0.4850 0.8400 -0.0004 27 1 2.9190 -3.6477 -0.0023 28 1 0.5895 -4.9736 -0.8931 29 1 0.5902 -4.9748 0.8869 30 1 2.8948 -5.9721 -0.8455 31 1 1.6687 -7.0207 -0.0938 32 1 3.4796 -7.9394 -0.5323 33 1 5.1315 -9.7108 -0.2873 34 1 6.9034 -10.7983 1.0608 35 1 7.8911 -9.2181 4.8882 36 1 6.2343 -7.4489 4.6509 37 1 4.4693 -6.3528 3.2997 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097163702.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:33 Heat of formation + Delta-G solvation = -57.412345 kcal Electronic energy + Delta-G solvation = -22306.260606 eV Core-core repulsion = 18672.731492 eV Total energy + Delta-G solvation = -3633.529114 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 363.026 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.70038 -40.17722 -39.21964 -36.86638 -35.31483 -34.46041 -33.92981 -32.25128 -30.99053 -30.62922 -29.06046 -28.00607 -24.98424 -24.06277 -23.26703 -22.80807 -21.72314 -19.44589 -19.29854 -18.21195 -17.75602 -17.50264 -17.01276 -16.77497 -16.04280 -15.81359 -15.71370 -15.36441 -15.16515 -14.69698 -14.55125 -14.34510 -14.22059 -13.99650 -13.46651 -13.32369 -13.09074 -12.92841 -12.75341 -12.64703 -12.42433 -12.29650 -12.02787 -11.97324 -11.73260 -11.39390 -11.27182 -10.95269 -10.58578 -9.89045 -9.50562 -9.45140 -8.71636 -8.30206 -6.86164 -0.55147 -0.15133 0.62113 0.97330 1.39954 1.40227 1.58258 1.82532 2.14097 2.24696 2.46473 3.00064 3.10809 3.53067 3.61403 3.76385 3.78696 3.93798 4.06114 4.12195 4.15058 4.20454 4.25642 4.33303 4.51926 4.70991 4.76064 4.83853 4.86705 5.03277 5.13927 5.22068 5.30026 5.31747 5.36139 5.67006 5.76830 5.86523 6.19970 6.24767 6.40371 6.86246 7.51757 8.47518 8.66340 Molecular weight = 363.03amu Principal moments of inertia in cm(-1) A = 0.023456 B = 0.001632 C = 0.001562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.430800 B =17153.483634 C =17921.282729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.027 3.973 3 Si 0.998 3.002 4 H -0.248 1.248 5 H -0.267 1.267 6 H -0.269 1.269 7 C -0.573 4.573 8 H 0.085 0.915 9 C 0.537 3.463 10 O -0.633 6.633 11 N -0.753 5.753 12 C 0.131 3.869 13 C 0.062 3.938 14 O -0.329 6.329 15 C 0.132 3.868 16 C -0.193 4.193 17 C -0.053 4.053 18 C -0.099 4.099 19 C -0.056 4.056 20 C -0.111 4.111 21 Br -0.050 7.050 22 C -0.090 4.090 23 C -0.112 4.112 24 C -0.016 4.016 25 C -0.178 4.178 26 H 0.275 0.725 27 H 0.395 0.605 28 H 0.071 0.929 29 H 0.037 0.963 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.155 0.845 33 H 0.167 0.833 34 H 0.157 0.843 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.098 -25.668 4.418 32.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.188 4.188 3 Si 0.818 3.182 4 H -0.171 1.171 5 H -0.191 1.191 6 H -0.194 1.194 7 C -0.609 4.609 8 H 0.104 0.896 9 C 0.341 3.659 10 O -0.521 6.521 11 N -0.408 5.408 12 C 0.007 3.993 13 C -0.013 4.013 14 O -0.243 6.243 15 C 0.086 3.914 16 C -0.211 4.211 17 C -0.071 4.071 18 C -0.100 4.100 19 C -0.075 4.075 20 C -0.191 4.191 21 Br 0.036 6.964 22 C -0.109 4.109 23 C -0.131 4.131 24 C -0.016 4.016 25 C -0.197 4.197 26 H 0.085 0.915 27 H 0.228 0.772 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.106 0.894 31 H 0.122 0.878 32 H 0.173 0.827 33 H 0.184 0.816 34 H 0.174 0.826 35 H 0.166 0.834 36 H 0.167 0.833 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 19.476 -25.979 4.628 32.797 hybrid contribution -0.081 1.077 -0.031 1.080 sum 19.395 -24.902 4.597 31.897 Atomic orbital electron populations 1.70190 1.09493 1.28911 1.36507 1.26990 0.95565 1.04994 0.91225 0.84963 0.79286 0.75381 0.78599 1.17115 1.19149 1.19365 1.21454 0.94672 0.90178 1.54645 0.89645 1.18604 0.86822 0.84423 0.76052 1.90548 1.16144 1.88016 1.57351 1.45767 1.09266 1.04652 1.81131 1.21072 0.94133 0.83243 1.00901 1.23151 0.93850 0.98993 0.85276 1.86194 1.48665 1.48744 1.40708 1.19008 0.89230 0.88328 0.94791 1.21376 1.02928 0.96723 1.00111 1.21229 0.92414 0.97160 0.96258 1.18197 0.99212 0.96876 0.95762 1.21199 0.92809 0.97037 0.96493 1.21560 1.00272 0.98390 0.98851 1.96723 1.53207 1.48716 1.97778 1.20958 0.98079 0.93272 0.98583 1.21198 0.95538 0.99257 0.97104 1.18020 0.95004 0.93864 0.94702 1.20294 0.99249 1.01884 0.98310 0.91530 0.77179 0.91048 0.94449 0.89409 0.87815 0.82730 0.81582 0.82585 0.83427 0.83267 0.84989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.68 11.83 21.84 0.26 -50.42 16 2 C 0.03 1.53 5.50 85.31 0.47 2.00 16 3 Si 1.00 41.28 29.56 68.60 2.03 43.31 16 4 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 5 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 6 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 7 C -0.57 -32.90 9.54 24.83 0.24 -32.66 16 8 H 0.09 4.43 7.85 -2.91 -0.02 4.41 16 9 C 0.54 31.51 7.75 86.36 0.67 32.18 16 10 O -0.63 -42.76 15.02 -4.30 -0.06 -42.82 16 11 N -0.75 -33.98 5.50 -467.42 -2.57 -36.55 16 12 C 0.13 4.83 6.06 86.38 0.52 5.35 16 13 C 0.06 1.54 4.86 71.98 0.35 1.89 16 14 O -0.33 -9.54 10.06 -92.28 -0.93 -10.46 16 15 C 0.13 3.22 6.63 22.27 0.15 3.37 16 16 C -0.19 -3.52 8.93 22.14 0.20 -3.33 16 17 C -0.05 -0.82 9.76 22.32 0.22 -0.60 16 18 C -0.10 -1.82 5.74 -21.28 -0.12 -1.95 16 19 C -0.06 -0.86 9.46 22.35 0.21 -0.65 16 20 C -0.11 -1.79 6.18 22.08 0.14 -1.66 16 21 Br -0.05 -0.70 33.65 -20.37 -0.69 -1.39 16 22 C -0.09 -1.42 9.67 22.06 0.21 -1.21 16 23 C -0.11 -1.99 9.77 22.34 0.22 -1.77 16 24 C -0.02 -0.33 5.74 -21.30 -0.12 -0.45 16 25 C -0.18 -4.30 9.68 22.42 0.22 -4.08 16 26 H 0.27 15.26 8.29 -92.71 -0.77 14.49 16 27 H 0.39 15.78 8.45 -92.71 -0.78 14.99 16 28 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 29 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.09 1.84 7.63 -2.39 -0.02 1.82 16 31 H 0.10 1.90 7.64 -2.39 -0.02 1.89 16 32 H 0.16 2.10 6.21 -2.91 -0.02 2.08 16 33 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 34 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 35 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16 36 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 37 H 0.13 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -78.64 344.86 1.94 -76.71 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: 0.33 Total: 25.18 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 3.56 Total: -3.55 kcal Atomic # 7 Polarization: -84.66 SS G_CDS: -2.31 Total: -86.97 kcal Atomic # 8 Polarization: -52.29 SS G_CDS: -0.99 Total: -53.29 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Atomic # 35 Polarization: -0.70 SS G_CDS: -0.69 Total: -1.39 kcal Total: -78.64 1.94 -76.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097163702.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.293 kcal (2) G-P(sol) polarization free energy of solvation -78.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds