Wall clock time and date at job start Tue Mar 31 2020 05:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86804 * 120.00033 * 2 1 4 4 H 1.48501 * 109.47266 * 275.00473 * 3 2 1 5 5 H 1.48502 * 109.46809 * 35.00310 * 3 2 1 6 6 H 1.48497 * 109.47107 * 155.00257 * 3 2 1 7 7 C 1.40128 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99512 * 185.05296 * 7 2 1 9 9 C 1.46155 * 120.00039 * 5.05674 * 7 2 1 10 10 O 1.21742 * 120.00101 * 5.05966 * 9 7 2 11 11 N 1.34776 * 119.99934 * 185.06068 * 9 7 2 12 12 C 1.39522 * 119.99866 * 174.64883 * 11 9 7 13 13 C 1.39104 * 120.05264 * 145.20713 * 12 11 9 14 14 C 1.38078 * 120.02501 * 179.97438 * 13 12 11 15 15 C 1.38256 * 120.13818 * 0.27843 * 14 13 12 16 16 C 1.38830 * 120.10720 * 359.48468 * 15 14 13 17 17 O 1.35910 * 120.01215 * 180.23157 * 16 15 14 18 18 C 1.35488 * 117.99463 * 75.34240 * 17 16 15 19 19 N 1.32320 * 119.18330 * 4.75981 * 18 17 16 20 20 C 1.32295 * 120.76117 * 179.76264 * 19 18 17 21 21 C 1.38675 * 119.17193 * 0.51208 * 20 19 18 22 22 Br 1.89092 * 120.75204 * 179.72848 * 21 20 19 23 23 C 1.38680 * 118.49547 * 359.74487 * 21 20 19 24 24 N 1.32293 * 119.17175 * 0.02562 * 23 21 20 25 25 C 1.38576 * 119.97445 * 0.49449 * 16 15 14 26 26 H 0.97001 * 120.00333 * 359.97438 * 1 2 3 27 27 H 0.96992 * 120.00475 * 354.64493 * 11 9 7 28 28 H 1.07997 * 119.98608 * 359.97438 * 13 12 11 29 29 H 1.08005 * 119.92634 * 179.97438 * 14 13 12 30 30 H 1.08006 * 119.94323 * 179.74672 * 15 14 13 31 31 H 1.08007 * 120.41490 * 180.26047 * 20 19 18 32 32 H 1.08005 * 120.41654 * 180.02562 * 23 21 20 33 33 H 1.08002 * 120.07411 * 179.73838 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.3821 2.1075 -1.3947 5 1 1.4946 2.6198 0.8031 6 1 3.5868 1.4120 0.5916 7 6 2.0070 -1.2135 -0.0005 8 1 3.0838 -1.2153 0.0818 9 6 1.2805 -2.4768 -0.1127 10 8 0.0773 -2.4726 -0.2980 11 7 1.9426 -3.6462 -0.0108 12 6 1.2365 -4.8496 -0.0058 13 6 1.7829 -5.9805 -0.6036 14 6 1.0838 -7.1712 -0.5979 15 6 -0.1626 -7.2414 -0.0036 16 6 -0.7112 -6.1175 0.5990 17 8 -1.9345 -6.1900 1.1867 18 6 -2.0273 -6.8100 2.3877 19 7 -0.9235 -7.2325 2.9827 20 6 -0.9774 -7.8376 4.1580 21 6 -2.2108 -8.0361 4.7601 22 35 -2.3404 -8.9027 6.4357 23 6 -3.3470 -7.5850 4.1052 24 7 -3.2201 -6.9835 2.9338 25 6 -0.0133 -4.9202 0.5962 26 1 -0.4851 0.8400 0.0004 27 1 2.9100 -3.6514 0.0589 28 1 2.7544 -5.9272 -1.0724 29 1 1.5094 -8.0482 -1.0628 30 1 -0.7085 -8.1734 -0.0045 31 1 -0.0725 -8.1764 4.6406 32 1 -4.3233 -7.7229 4.5461 33 1 -0.4404 -4.0438 1.0608 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097163942.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:44 Heat of formation + Delta-G solvation = 27.505622 kcal Electronic energy + Delta-G solvation = -22775.654352 eV Core-core repulsion = 19042.267214 eV Total energy + Delta-G solvation = -3733.387138 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 363.001 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.62583 -39.84880 -38.45953 -36.61447 -34.18873 -33.47753 -33.02809 -32.48108 -30.32346 -29.45700 -28.89650 -26.30569 -25.22656 -24.27719 -22.60570 -22.01566 -20.15077 -18.98695 -18.37718 -17.53744 -16.62762 -16.31896 -15.90174 -15.57042 -15.45249 -14.91538 -14.72194 -14.50568 -14.07604 -13.86724 -13.50273 -12.96674 -12.65402 -12.50368 -11.91728 -11.66447 -11.48608 -11.34026 -11.31342 -11.27941 -11.15236 -10.93073 -10.82766 -10.64504 -10.38082 -9.53363 -9.41041 -9.09326 -8.95854 -8.47278 -7.82667 -7.24590 -6.41483 -4.87090 0.45354 0.70665 1.08744 1.37785 1.84980 2.63077 3.04459 3.11801 3.15319 3.37383 3.72345 3.94247 4.07301 4.10069 4.29333 4.44937 4.48366 4.60037 5.20897 5.25457 5.39909 5.47897 5.55870 5.61694 5.92188 5.95465 6.24380 6.42365 6.65523 6.75977 6.83744 6.90926 7.23936 7.32226 7.64761 7.85642 7.95675 8.08988 8.79991 9.12723 10.31385 10.50639 Molecular weight = 363.00amu Principal moments of inertia in cm(-1) A = 0.014338 B = 0.002330 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.326596 B =12014.660629 C =13013.839983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.086 3.914 3 Si 0.914 3.086 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.538 4.538 8 H 0.073 0.927 9 C 0.541 3.459 10 O -0.559 6.559 11 N -0.698 5.698 12 C 0.207 3.793 13 C -0.165 4.165 14 C -0.086 4.086 15 C -0.157 4.157 16 C 0.100 3.900 17 O -0.217 6.217 18 C 0.519 3.481 19 N -0.540 5.540 20 C 0.224 3.776 21 C -0.255 4.255 22 Br -0.020 7.020 23 C 0.222 3.778 24 N -0.514 5.514 25 C -0.113 4.113 26 H 0.273 0.727 27 H 0.396 0.604 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.116 0.884 31 H 0.180 0.820 32 H 0.185 0.815 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.519 -19.090 11.591 22.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.135 4.135 3 Si 0.738 3.262 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.574 4.574 8 H 0.091 0.909 9 C 0.348 3.652 10 O -0.441 6.441 11 N -0.342 5.342 12 C 0.107 3.893 13 C -0.187 4.187 14 C -0.105 4.105 15 C -0.177 4.177 16 C 0.057 3.943 17 O -0.115 6.115 18 C 0.219 3.781 19 N -0.268 5.268 20 C 0.055 3.945 21 C -0.340 4.340 22 Br 0.064 6.936 23 C 0.054 3.946 24 N -0.239 5.239 25 C -0.134 4.134 26 H 0.084 0.916 27 H 0.230 0.770 28 H 0.142 0.858 29 H 0.142 0.858 30 H 0.134 0.866 31 H 0.197 0.803 32 H 0.202 0.798 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.692 -18.509 10.906 21.651 hybrid contribution 0.938 0.576 0.451 1.190 sum -1.754 -17.933 11.357 21.299 Atomic orbital electron populations 1.69962 1.07226 1.27997 1.33395 1.25752 0.94699 1.00594 0.92460 0.86251 0.80166 0.80896 0.78902 1.19572 1.20257 1.18715 1.20842 0.94237 0.89025 1.53299 0.90853 1.18438 0.87381 0.82054 0.77301 1.90665 1.14758 1.85976 1.52651 1.44209 1.09759 1.04159 1.76067 1.17638 0.92091 0.87008 0.92544 1.21034 1.02022 0.93113 1.02549 1.20569 0.93595 0.97289 0.99047 1.20904 0.96744 0.97062 1.03039 1.18264 0.83957 0.94501 0.97536 1.84545 1.30694 1.69331 1.26923 1.21175 0.84868 0.85880 0.86162 1.68400 1.31184 1.15740 1.11438 1.23109 0.96613 0.86986 0.87793 1.23492 0.99044 1.12584 0.98867 1.96744 1.98722 1.77237 1.20939 1.23183 0.98518 0.85951 0.86961 1.67754 1.24720 1.19139 1.12308 1.21227 0.94316 0.97511 1.00386 0.91594 0.77002 0.85776 0.85753 0.86640 0.80266 0.79819 0.83677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.92 11.87 55.55 0.66 -21.27 16 2 C 0.09 2.31 5.49 -17.35 -0.10 2.22 16 3 Si 0.91 19.33 29.56 -169.99 -5.03 14.30 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.54 -14.46 9.53 -35.70 -0.34 -14.80 16 8 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 9 C 0.54 14.79 7.44 -13.08 -0.10 14.69 16 10 O -0.56 -17.39 12.85 5.15 0.07 -17.32 16 11 N -0.70 -15.27 5.32 -11.22 -0.06 -15.33 16 12 C 0.21 4.23 6.25 -83.79 -0.52 3.71 16 13 C -0.17 -2.70 9.97 -39.32 -0.39 -3.10 16 14 C -0.09 -1.26 10.03 -39.63 -0.40 -1.66 16 15 C -0.16 -2.55 9.66 -39.36 -0.38 -2.93 16 16 C 0.10 1.93 5.08 -39.24 -0.20 1.73 16 17 O -0.22 -4.21 10.04 -2.38 -0.02 -4.23 16 18 C 0.52 8.71 8.38 -91.24 -0.76 7.95 16 19 N -0.54 -8.12 9.19 -14.70 -0.14 -8.26 16 20 C 0.22 2.50 11.08 -17.19 -0.19 2.31 16 21 C -0.25 -2.55 6.27 -39.26 -0.25 -2.79 16 22 Br -0.02 -0.15 33.76 -68.01 -2.30 -2.45 16 23 C 0.22 2.41 11.08 -17.19 -0.19 2.22 16 24 N -0.51 -7.71 10.46 -14.70 -0.15 -7.87 16 25 C -0.11 -2.48 8.58 -39.21 -0.34 -2.82 16 26 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16 27 H 0.40 7.26 8.80 -40.82 -0.36 6.90 16 28 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 30 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 31 H 0.18 1.44 8.06 -52.48 -0.42 1.02 16 32 H 0.18 1.33 8.06 -52.48 -0.42 0.91 16 33 H 0.15 3.73 6.52 -52.49 -0.34 3.39 16 LS Contribution 324.97 15.07 4.90 4.90 Total: -1.00 -33.89 324.97 -8.59 -42.48 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -2.36 Total: 8.31 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: -4.15 Total: 6.74 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: 0.31 Total: -52.72 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: 0.04 Total: -21.56 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Atomic # 35 Polarization: -0.15 SS G_CDS: -2.30 Total: -2.45 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.89 -8.59 -42.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097163942.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.982 kcal (2) G-P(sol) polarization free energy of solvation -33.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds