Wall clock time and date at job start Tue Mar 31 2020 06:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47368 * 2 1 4 4 C 1.52992 * 109.47244 * 125.61037 * 3 2 1 5 5 C 1.53008 * 109.46760 * 5.61035 * 3 2 1 6 6 N 1.46498 * 109.47417 * 245.61553 * 3 2 1 7 7 C 1.46494 * 120.00427 * 75.26086 * 6 3 2 8 8 C 1.50704 * 109.47117 * 86.09799 * 7 6 3 9 9 H 1.08008 * 119.99413 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00447 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99914 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00076 * 180.02562 * 10 8 7 13 13 H 1.48488 * 109.47106 * 59.99706 * 12 10 8 14 14 H 1.48494 * 109.46800 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.46616 * 299.99646 * 12 10 8 16 16 C 1.34777 * 119.99499 * 255.27229 * 6 3 2 17 17 O 1.21594 * 119.99842 * 206.51551 * 16 6 3 18 18 C 1.47611 * 120.00595 * 26.50717 * 16 6 3 19 19 C 1.39728 * 120.08049 * 18.46785 * 18 16 6 20 20 C 1.38134 * 119.90373 * 180.02562 * 19 18 16 21 21 O 1.35996 * 119.91403 * 180.02562 * 20 19 18 22 22 C 1.42904 * 116.99912 * 5.55995 * 21 20 19 23 23 C 1.39430 * 120.17788 * 0.02562 * 20 19 18 24 24 C 1.39067 * 120.02256 * 359.87086 * 23 20 19 25 25 C 1.38410 * 120.00701 * 359.88999 * 24 23 20 26 26 O 1.36170 * 120.76057 * 180.23931 * 24 23 20 27 27 C 1.43164 * 116.70435 * 342.63812 * 26 24 23 28 28 C 1.53477 * 108.21614 * 46.27433 * 27 26 24 29 29 O 1.36052 * 119.23279 * 179.63213 * 23 20 19 30 30 H 1.09004 * 109.47011 * 304.18022 * 1 2 3 31 31 H 1.08995 * 109.47293 * 64.17578 * 1 2 3 32 32 H 1.08998 * 109.47114 * 184.17827 * 1 2 3 33 33 H 1.08997 * 109.47069 * 240.00562 * 2 1 3 34 34 H 1.08995 * 109.47532 * 120.00170 * 2 1 3 35 35 H 1.09000 * 109.47358 * 250.49718 * 4 3 2 36 36 H 1.09006 * 109.47251 * 10.49257 * 4 3 2 37 37 H 1.08996 * 109.47452 * 130.49397 * 4 3 2 38 38 H 1.08995 * 109.46980 * 299.99692 * 5 3 2 39 39 H 1.08999 * 109.46915 * 59.99789 * 5 3 2 40 40 H 1.08997 * 109.46554 * 180.02562 * 5 3 2 41 41 H 1.09003 * 109.47582 * 206.09532 * 7 6 3 42 42 H 1.09002 * 109.47306 * 326.10325 * 7 6 3 43 43 H 0.96992 * 119.99594 * 180.02562 * 11 10 8 44 44 H 1.08001 * 120.04385 * 0.02661 * 19 18 16 45 45 H 1.08996 * 109.46868 * 284.32318 * 22 21 20 46 46 H 1.09000 * 109.46770 * 44.32450 * 22 21 20 47 47 H 1.09006 * 109.46752 * 164.32373 * 22 21 20 48 48 H 1.08002 * 119.97643 * 180.17253 * 25 24 23 49 49 H 1.08997 * 109.71583 * 165.95386 * 27 26 24 50 50 H 1.09000 * 109.71588 * 286.59384 * 27 26 24 51 51 H 1.09000 * 109.70785 * 59.92984 * 28 27 26 52 52 H 1.09004 * 109.70768 * 180.55034 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.0019 1.6434 1.1727 5 6 0.8565 2.4019 0.1410 6 7 2.7405 1.7129 -1.2580 7 6 1.9777 1.9189 -2.4915 8 6 1.5769 3.3678 -2.5983 9 1 1.8617 4.0652 -1.8243 10 6 0.8459 3.8028 -3.6834 11 7 0.4988 2.9534 -4.6256 12 14 0.3499 5.5989 -3.8160 13 1 1.5676 6.4482 -3.8400 14 1 -0.4245 5.8074 -5.0657 15 1 -0.4885 5.9683 -2.6472 16 6 4.0868 1.7719 -1.2804 17 8 4.6522 2.4368 -2.1270 18 6 4.8750 1.0295 -0.2771 19 6 4.2891 -0.0179 0.4385 20 6 5.0299 -0.7098 1.3769 21 8 4.4601 -1.7297 2.0731 22 6 3.1347 -2.1102 1.6982 23 6 6.3604 -0.3655 1.6122 24 6 6.9463 0.6752 0.8997 25 6 6.2094 1.3681 -0.0451 26 8 8.2458 1.0210 1.1140 27 6 8.8446 0.5524 2.3270 28 6 8.4953 -0.9330 2.4919 29 8 7.0699 -1.0549 2.5462 30 1 -0.3633 0.5774 0.8502 31 1 -0.3633 0.4476 -0.9250 32 1 -0.3633 -1.0249 0.0749 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.5329 2.2808 1.9223 36 1 3.2411 0.6768 1.6161 37 1 3.9170 2.1156 0.8153 38 1 0.1713 2.2589 -0.6945 39 1 0.3353 2.2008 1.0770 40 1 1.2198 3.4296 0.1406 41 1 2.5935 1.6482 -3.3492 42 1 1.0839 1.2951 -2.4746 43 1 -0.0151 3.2595 -5.3891 44 1 3.2586 -0.2861 0.2581 45 1 2.4249 -1.3740 2.0754 46 1 3.0644 -2.1592 0.6116 47 1 2.9038 -3.0877 2.1217 48 1 6.6657 2.1745 -0.6001 49 1 9.9267 0.6718 2.2729 50 1 8.4535 1.1181 3.1726 51 1 8.8805 -1.4976 1.6428 52 1 8.9322 -1.3130 3.4154 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097165013.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:43 Heat of formation + Delta-G solvation = -32.252293 kcal Electronic energy + Delta-G solvation = -36024.137934 eV Core-core repulsion = 31572.917647 eV Total energy + Delta-G solvation = -4451.220288 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 363.192 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.93303 -40.62857 -39.03149 -37.29879 -37.15120 -36.37843 -33.41214 -32.31104 -31.73665 -30.13968 -29.84132 -29.13166 -27.65855 -27.21592 -26.03329 -25.11607 -24.02827 -23.17609 -22.11705 -21.35231 -20.66203 -18.93741 -18.28525 -17.76193 -17.24138 -16.57861 -16.55475 -16.08527 -16.06619 -15.48767 -15.11733 -15.08568 -14.94359 -14.74154 -14.63737 -14.35516 -14.20848 -14.08819 -13.56123 -13.39641 -13.09803 -12.81205 -12.38841 -12.34658 -12.26842 -12.06760 -11.84894 -11.72786 -11.40249 -11.39263 -11.18461 -11.14153 -11.09580 -10.90644 -10.83834 -10.68444 -10.53886 -10.51134 -10.34667 -9.97464 -9.85682 -9.49768 -9.08236 -8.39856 -7.94898 -7.86850 -7.60324 -6.01001 -4.03464 0.93105 1.33792 2.83009 2.97406 3.15745 3.20741 3.34065 3.38694 3.42958 3.82324 3.97515 4.08367 4.47606 4.59766 4.65220 4.70171 4.74445 4.75564 4.90872 4.96538 5.05186 5.09458 5.11023 5.21216 5.26912 5.28866 5.31351 5.34102 5.46795 5.60325 5.65561 5.73735 5.85634 5.89205 6.00925 6.04650 6.06926 6.21796 6.24982 6.29448 6.35393 6.45428 6.50435 6.66226 6.71971 7.02340 7.06972 7.12873 7.37764 7.44836 7.59241 7.95502 8.26289 8.39662 8.87496 9.03311 9.60185 11.06894 Molecular weight = 363.19amu Principal moments of inertia in cm(-1) A = 0.013840 B = 0.003428 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.627756 B = 8167.101586 C = 9540.313479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.160 4.160 3 C 0.168 3.832 4 C -0.187 4.187 5 C -0.144 4.144 6 N -0.597 5.597 7 C 0.253 3.747 8 C -0.514 4.514 9 H 0.059 0.941 10 C 0.060 3.940 11 N -0.898 5.898 12 Si 0.894 3.106 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.278 1.278 16 C 0.555 3.445 17 O -0.515 6.515 18 C -0.087 4.087 19 C -0.174 4.174 20 C 0.102 3.898 21 O -0.304 6.304 22 C 0.014 3.986 23 C 0.038 3.962 24 C 0.064 3.936 25 C -0.095 4.095 26 O -0.301 6.301 27 C 0.019 3.981 28 C 0.019 3.981 29 O -0.295 6.295 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.052 0.948 40 H 0.060 0.940 41 H 0.036 0.964 42 H 0.035 0.965 43 H 0.262 0.738 44 H 0.177 0.823 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.100 0.900 48 H 0.147 0.853 49 H 0.121 0.879 50 H 0.077 0.923 51 H 0.076 0.924 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.617 -11.237 17.497 22.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.197 4.197 3 C 0.082 3.918 4 C -0.243 4.243 5 C -0.201 4.201 6 N -0.330 5.330 7 C 0.135 3.865 8 C -0.553 4.553 9 H 0.078 0.922 10 C -0.141 4.141 11 N -0.538 5.538 12 Si 0.722 3.278 13 H -0.202 1.202 14 H -0.214 1.214 15 H -0.203 1.203 16 C 0.342 3.658 17 O -0.391 6.391 18 C -0.091 4.091 19 C -0.192 4.192 20 C 0.056 3.944 21 O -0.218 6.218 22 C -0.081 4.081 23 C -0.008 4.008 24 C 0.019 3.981 25 C -0.115 4.115 26 O -0.215 6.215 27 C -0.056 4.056 28 C -0.057 4.057 29 O -0.210 6.210 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.072 0.928 44 H 0.193 0.807 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.118 0.882 48 H 0.164 0.836 49 H 0.139 0.861 50 H 0.095 0.905 51 H 0.094 0.906 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.923 -11.001 17.021 22.144 hybrid contribution -0.270 1.021 -0.163 1.068 sum 8.653 -9.980 16.858 21.417 Atomic orbital electron populations 1.21989 0.94630 1.00986 1.03341 1.22676 0.97754 0.97090 1.02191 1.20385 0.93078 0.94229 0.84065 1.24021 1.00697 1.01740 0.97843 1.22309 0.97245 0.99023 1.01557 1.48199 1.04263 1.70426 1.10159 1.19231 0.90758 0.96904 0.79625 1.21413 1.33064 0.94261 1.06527 0.92230 1.24910 0.96186 0.97559 0.95493 1.69913 1.38900 1.34422 1.10522 0.86625 0.78546 0.85473 0.77191 1.20240 1.21364 1.20319 1.17879 0.82797 0.81034 0.84134 1.90777 1.70776 1.38530 1.39030 1.19722 0.93664 0.97252 0.98491 1.22386 1.02448 0.97626 0.96784 1.17814 0.90152 0.91423 0.94982 1.86142 1.30637 1.48498 1.56506 1.23494 0.81806 1.01458 1.01348 1.18100 0.90597 0.95148 0.96968 1.18279 0.85159 0.95011 0.99657 1.20363 0.91891 1.00867 0.98334 1.86372 1.22217 1.72878 1.40059 1.23632 1.00149 0.94819 0.87041 1.23625 0.80383 0.96827 1.04820 1.86353 1.18113 1.66711 1.49786 0.92001 0.91111 0.93443 0.90555 0.90856 0.92229 0.89943 0.90100 0.89683 0.92949 0.92103 0.94621 0.94679 0.92803 0.80692 0.91779 0.92003 0.88178 0.83553 0.86145 0.90469 0.90568 0.86212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.68 37.16 0.32 -1.56 16 2 C -0.16 -2.12 3.76 -26.73 -0.10 -2.22 16 3 C 0.17 2.74 0.76 -131.82 -0.10 2.64 16 4 C -0.19 -2.76 7.42 37.15 0.28 -2.48 16 5 C -0.14 -2.40 5.79 37.16 0.21 -2.19 16 6 N -0.60 -12.39 2.18 -161.36 -0.35 -12.74 16 7 C 0.25 6.32 4.38 -5.20 -0.02 6.29 16 8 C -0.51 -13.99 7.68 -34.44 -0.26 -14.26 16 9 H 0.06 1.65 7.03 -52.48 -0.37 1.28 16 10 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 11 N -0.90 -25.99 13.29 55.43 0.74 -25.25 16 12 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 C 0.55 11.92 6.43 -12.44 -0.08 11.84 16 17 O -0.51 -13.19 16.51 5.28 0.09 -13.10 16 18 C -0.09 -1.53 3.45 -105.00 -0.36 -1.89 16 19 C -0.17 -2.60 4.49 -39.06 -0.18 -2.77 16 20 C 0.10 1.47 6.18 -39.18 -0.24 1.23 16 21 O -0.30 -3.98 10.24 -35.15 -0.36 -4.34 16 22 C 0.01 0.13 9.18 101.05 0.93 1.05 16 23 C 0.04 0.55 6.52 -38.83 -0.25 0.30 16 24 C 0.06 0.96 6.48 -39.21 -0.25 0.70 16 25 C -0.09 -1.59 9.49 -39.00 -0.37 -1.96 16 26 O -0.30 -3.98 10.41 -33.09 -0.34 -4.33 16 27 C 0.02 0.17 7.26 37.40 0.27 0.44 16 28 C 0.02 0.17 7.26 37.40 0.27 0.44 16 29 O -0.30 -3.85 10.16 -44.79 -0.46 -4.31 16 30 H 0.06 0.69 6.25 -51.93 -0.32 0.37 16 31 H 0.07 1.05 6.61 -51.93 -0.34 0.71 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 1.11 7.53 -51.93 -0.39 0.71 16 34 H 0.07 0.79 2.43 -51.93 -0.13 0.67 16 35 H 0.06 0.79 7.63 -51.93 -0.40 0.40 16 36 H 0.08 1.09 3.33 -67.18 -0.22 0.87 16 37 H 0.08 1.36 4.27 -51.97 -0.22 1.14 16 38 H 0.08 1.60 5.23 -51.93 -0.27 1.33 16 39 H 0.05 0.70 6.71 -51.93 -0.35 0.35 16 40 H 0.06 1.13 7.36 -51.93 -0.38 0.75 16 41 H 0.04 1.01 7.78 -51.93 -0.40 0.61 16 42 H 0.04 0.87 7.15 -51.93 -0.37 0.50 16 43 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.18 2.41 0.81 -56.08 -0.05 2.37 16 45 H 0.06 0.54 5.72 -51.93 -0.30 0.24 16 46 H 0.06 0.58 6.57 -51.93 -0.34 0.24 16 47 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.15 2.53 7.75 -52.49 -0.41 2.12 16 49 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 51 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 52 H 0.12 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 381.61 15.07 5.75 5.75 Total: -1.00 -33.90 381.61 -6.93 -40.84 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -6.93 Total: 3.64 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -0.04 Total: -2.84 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.38 Total: -37.99 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -1.07 Total: -26.08 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.90 -6.93 -40.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097165013.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.583 kcal (2) G-P(sol) polarization free energy of solvation -33.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds