Wall clock time and date at job start Tue Mar 31 2020 06:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47368 * 2 1 4 4 C 1.52992 * 109.47244 * 125.61037 * 3 2 1 5 5 C 1.53008 * 109.46760 * 5.61035 * 3 2 1 6 6 N 1.46498 * 109.47417 * 245.61553 * 3 2 1 7 7 C 1.46494 * 120.00427 * 75.26086 * 6 3 2 8 8 C 1.50704 * 109.47117 * 86.09799 * 7 6 3 9 9 H 1.08008 * 119.99413 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00447 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99914 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00076 * 180.02562 * 10 8 7 13 13 H 1.48488 * 109.47106 * 59.99706 * 12 10 8 14 14 H 1.48494 * 109.46800 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.46616 * 299.99646 * 12 10 8 16 16 C 1.34777 * 119.99499 * 255.27229 * 6 3 2 17 17 O 1.21594 * 119.99842 * 206.51551 * 16 6 3 18 18 C 1.47611 * 120.00595 * 26.50717 * 16 6 3 19 19 C 1.39728 * 120.08049 * 18.46785 * 18 16 6 20 20 C 1.38134 * 119.90373 * 180.02562 * 19 18 16 21 21 O 1.35996 * 119.91403 * 180.02562 * 20 19 18 22 22 C 1.42904 * 116.99912 * 5.55995 * 21 20 19 23 23 C 1.39430 * 120.17788 * 0.02562 * 20 19 18 24 24 C 1.39067 * 120.02256 * 359.87086 * 23 20 19 25 25 C 1.38410 * 120.00701 * 359.88999 * 24 23 20 26 26 O 1.36170 * 120.76057 * 180.23931 * 24 23 20 27 27 C 1.43164 * 116.70435 * 342.63812 * 26 24 23 28 28 C 1.53477 * 108.21614 * 46.27433 * 27 26 24 29 29 O 1.36052 * 119.23279 * 179.63213 * 23 20 19 30 30 H 1.09004 * 109.47011 * 304.18022 * 1 2 3 31 31 H 1.08995 * 109.47293 * 64.17578 * 1 2 3 32 32 H 1.08998 * 109.47114 * 184.17827 * 1 2 3 33 33 H 1.08997 * 109.47069 * 240.00562 * 2 1 3 34 34 H 1.08995 * 109.47532 * 120.00170 * 2 1 3 35 35 H 1.09000 * 109.47358 * 250.49718 * 4 3 2 36 36 H 1.09006 * 109.47251 * 10.49257 * 4 3 2 37 37 H 1.08996 * 109.47452 * 130.49397 * 4 3 2 38 38 H 1.08995 * 109.46980 * 299.99692 * 5 3 2 39 39 H 1.08999 * 109.46915 * 59.99789 * 5 3 2 40 40 H 1.08997 * 109.46554 * 180.02562 * 5 3 2 41 41 H 1.09003 * 109.47582 * 206.09532 * 7 6 3 42 42 H 1.09002 * 109.47306 * 326.10325 * 7 6 3 43 43 H 0.96992 * 119.99594 * 180.02562 * 11 10 8 44 44 H 1.08001 * 120.04385 * 0.02661 * 19 18 16 45 45 H 1.08996 * 109.46868 * 284.32318 * 22 21 20 46 46 H 1.09000 * 109.46770 * 44.32450 * 22 21 20 47 47 H 1.09006 * 109.46752 * 164.32373 * 22 21 20 48 48 H 1.08002 * 119.97643 * 180.17253 * 25 24 23 49 49 H 1.08997 * 109.71583 * 165.95386 * 27 26 24 50 50 H 1.09000 * 109.71588 * 286.59384 * 27 26 24 51 51 H 1.09000 * 109.70785 * 59.92984 * 28 27 26 52 52 H 1.09004 * 109.70768 * 180.55034 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.0019 1.6434 1.1727 5 6 0.8565 2.4019 0.1410 6 7 2.7405 1.7129 -1.2580 7 6 1.9777 1.9189 -2.4915 8 6 1.5769 3.3678 -2.5983 9 1 1.8617 4.0652 -1.8243 10 6 0.8459 3.8028 -3.6834 11 7 0.4988 2.9534 -4.6256 12 14 0.3499 5.5989 -3.8160 13 1 1.5676 6.4482 -3.8400 14 1 -0.4245 5.8074 -5.0657 15 1 -0.4885 5.9683 -2.6472 16 6 4.0868 1.7719 -1.2804 17 8 4.6522 2.4368 -2.1270 18 6 4.8750 1.0295 -0.2771 19 6 4.2891 -0.0179 0.4385 20 6 5.0299 -0.7098 1.3769 21 8 4.4601 -1.7297 2.0731 22 6 3.1347 -2.1102 1.6982 23 6 6.3604 -0.3655 1.6122 24 6 6.9463 0.6752 0.8997 25 6 6.2094 1.3681 -0.0451 26 8 8.2458 1.0210 1.1140 27 6 8.8446 0.5524 2.3270 28 6 8.4953 -0.9330 2.4919 29 8 7.0699 -1.0549 2.5462 30 1 -0.3633 0.5774 0.8502 31 1 -0.3633 0.4476 -0.9250 32 1 -0.3633 -1.0249 0.0749 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.5329 2.2808 1.9223 36 1 3.2411 0.6768 1.6161 37 1 3.9170 2.1156 0.8153 38 1 0.1713 2.2589 -0.6945 39 1 0.3353 2.2008 1.0770 40 1 1.2198 3.4296 0.1406 41 1 2.5935 1.6482 -3.3492 42 1 1.0839 1.2951 -2.4746 43 1 -0.0151 3.2595 -5.3891 44 1 3.2586 -0.2861 0.2581 45 1 2.4249 -1.3740 2.0754 46 1 3.0644 -2.1592 0.6116 47 1 2.9038 -3.0877 2.1217 48 1 6.6657 2.1745 -0.6001 49 1 9.9267 0.6718 2.2729 50 1 8.4535 1.1181 3.1726 51 1 8.8805 -1.4976 1.6428 52 1 8.9322 -1.3130 3.4154 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097165013.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:42 Heat of formation + Delta-G solvation = -54.470877 kcal Electronic energy + Delta-G solvation = -36025.101404 eV Core-core repulsion = 31572.917647 eV Total energy + Delta-G solvation = -4452.183758 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 363.192 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.14416 -41.76712 -40.19413 -38.68263 -38.29284 -37.57150 -35.32954 -33.87463 -33.05284 -31.27730 -30.96168 -30.25632 -29.07544 -28.53811 -27.28586 -26.27288 -25.14624 -24.85524 -23.48247 -22.51878 -21.93516 -20.08819 -19.41279 -18.78492 -18.66380 -18.44664 -17.72186 -17.41071 -17.11393 -16.86244 -16.45927 -16.19751 -16.07662 -15.95446 -15.88305 -15.81628 -15.40829 -15.28426 -14.80116 -14.40674 -14.36917 -14.23821 -13.94802 -13.68572 -13.51754 -13.35617 -13.15873 -13.08143 -12.85418 -12.73480 -12.55688 -12.47794 -12.44962 -12.27524 -12.18545 -11.99388 -11.92152 -11.71521 -11.58322 -11.47175 -11.37640 -11.03572 -10.78763 -10.57365 -9.43085 -9.03680 -8.99595 -8.16590 -6.27126 -0.33407 0.16262 1.36370 1.40452 1.47030 1.64956 1.87425 2.07121 2.18032 2.35956 2.44802 2.61561 3.12774 3.31551 3.40577 3.61105 3.70408 3.78067 3.82733 3.96972 4.00757 4.06012 4.11220 4.20045 4.26387 4.32257 4.46568 4.51526 4.56250 4.58355 4.63098 4.66724 4.69614 4.77715 4.83083 4.84440 4.88262 4.98612 5.05970 5.09375 5.13375 5.19085 5.23596 5.28576 5.42577 5.44628 5.63859 5.69260 5.75857 5.90756 6.10105 6.12783 6.42880 6.71240 6.79231 7.21809 7.42475 8.89798 Molecular weight = 363.19amu Principal moments of inertia in cm(-1) A = 0.013840 B = 0.003428 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.627756 B = 8167.101586 C = 9540.313479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.155 4.155 3 C 0.158 3.842 4 C -0.182 4.182 5 C -0.139 4.139 6 N -0.598 5.598 7 C 0.273 3.727 8 C -0.521 4.521 9 H 0.049 0.951 10 C 0.011 3.989 11 N -0.928 5.928 12 Si 0.955 3.045 13 H -0.284 1.284 14 H -0.280 1.280 15 H -0.261 1.261 16 C 0.549 3.451 17 O -0.576 6.576 18 C -0.099 4.099 19 C -0.166 4.166 20 C 0.107 3.893 21 O -0.308 6.308 22 C -0.002 4.002 23 C 0.043 3.957 24 C 0.069 3.931 25 C -0.110 4.110 26 O -0.317 6.317 27 C 0.011 3.989 28 C 0.013 3.987 29 O -0.305 6.305 30 H 0.079 0.921 31 H 0.037 0.963 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.095 0.905 40 H 0.034 0.966 41 H -0.011 1.011 42 H 0.035 0.965 43 H 0.265 0.735 44 H 0.187 0.813 45 H 0.079 0.921 46 H 0.061 0.939 47 H 0.131 0.869 48 H 0.127 0.873 49 H 0.157 0.843 50 H 0.084 0.916 51 H 0.080 0.920 52 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.592 -12.949 21.255 26.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.192 4.192 3 C 0.074 3.926 4 C -0.237 4.237 5 C -0.197 4.197 6 N -0.330 5.330 7 C 0.152 3.848 8 C -0.559 4.559 9 H 0.067 0.933 10 C -0.188 4.188 11 N -0.568 5.568 12 Si 0.780 3.220 13 H -0.210 1.210 14 H -0.205 1.205 15 H -0.185 1.185 16 C 0.338 3.662 17 O -0.456 6.456 18 C -0.103 4.103 19 C -0.184 4.184 20 C 0.061 3.939 21 O -0.222 6.222 22 C -0.095 4.095 23 C -0.004 4.004 24 C 0.023 3.977 25 C -0.130 4.130 26 O -0.232 6.232 27 C -0.063 4.063 28 C -0.062 4.062 29 O -0.219 6.219 30 H 0.097 0.903 31 H 0.056 0.944 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.125 0.875 35 H 0.097 0.903 36 H 0.121 0.879 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.113 0.887 40 H 0.053 0.947 41 H 0.007 0.993 42 H 0.053 0.947 43 H 0.074 0.926 44 H 0.203 0.797 45 H 0.097 0.903 46 H 0.079 0.921 47 H 0.149 0.851 48 H 0.145 0.855 49 H 0.175 0.825 50 H 0.103 0.897 51 H 0.098 0.902 52 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 8.882 -12.743 20.839 25.991 hybrid contribution -0.134 1.452 -1.217 1.899 sum 8.748 -11.291 19.622 24.270 Atomic orbital electron populations 1.21957 0.93518 1.02786 1.02372 1.22643 0.98665 0.94773 1.03133 1.20797 0.93088 0.96257 0.82486 1.23949 0.99401 1.03073 0.97304 1.22273 0.97052 0.97618 1.02711 1.48195 1.04275 1.69984 1.10547 1.18694 0.89959 0.95823 0.80321 1.21587 1.32858 0.95129 1.06363 0.93285 1.25691 0.96250 1.01666 0.95160 1.70020 1.39547 1.36236 1.11006 0.85660 0.78034 0.80299 0.77982 1.21041 1.20471 1.18542 1.18554 0.83056 0.80402 0.84169 1.90723 1.71873 1.41336 1.41688 1.19231 0.93647 0.98463 0.98941 1.22325 1.02877 0.96686 0.96542 1.17813 0.90199 0.91400 0.94460 1.86160 1.32370 1.47507 1.56173 1.23867 0.80306 1.03540 1.01805 1.18191 0.90977 0.94651 0.96564 1.18130 0.85877 0.94750 0.98936 1.20246 0.92075 1.01253 0.99390 1.86354 1.21169 1.73321 1.42386 1.24073 1.01947 0.94848 0.85460 1.24038 0.78052 0.96920 1.07179 1.86341 1.20436 1.66214 1.48921 0.90258 0.94364 0.90692 0.91946 0.87503 0.90301 0.87901 0.92293 0.92187 0.88696 0.94710 0.99262 0.94686 0.92629 0.79714 0.90323 0.92070 0.85072 0.85462 0.82523 0.89741 0.90179 0.82204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 8.68 71.98 0.62 -2.76 16 2 C -0.15 -3.89 3.76 30.60 0.12 -3.77 16 3 C 0.16 5.13 0.76 3.61 0.00 5.13 16 4 C -0.18 -5.14 7.42 71.98 0.53 -4.60 16 5 C -0.14 -4.62 5.79 71.98 0.42 -4.20 16 6 N -0.60 -26.24 2.18 -782.68 -1.71 -27.94 16 7 C 0.27 14.55 4.38 85.64 0.37 14.92 16 8 C -0.52 -29.87 7.68 25.60 0.20 -29.67 16 9 H 0.05 2.86 7.03 -2.91 -0.02 2.84 16 10 C 0.01 0.63 5.46 84.65 0.46 1.09 16 11 N -0.93 -55.68 13.29 21.45 0.28 -55.39 16 12 Si 0.95 45.66 29.54 68.60 2.03 47.68 16 13 H -0.28 -13.88 7.11 99.48 0.71 -13.18 16 14 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 15 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 16 C 0.55 25.30 6.43 86.72 0.56 25.86 16 17 O -0.58 -32.21 16.51 -4.01 -0.07 -32.28 16 18 C -0.10 -3.61 3.45 -20.11 -0.07 -3.68 16 19 C -0.17 -4.83 4.49 22.61 0.10 -4.73 16 20 C 0.11 2.88 6.18 22.53 0.14 3.02 16 21 O -0.31 -7.02 10.24 -78.76 -0.81 -7.83 16 22 C 0.00 -0.02 9.18 113.37 1.04 1.02 16 23 C 0.04 1.17 6.52 22.76 0.15 1.32 16 24 C 0.07 2.04 6.48 22.51 0.15 2.18 16 25 C -0.11 -3.87 9.49 22.64 0.21 -3.65 16 26 O -0.32 -8.10 10.41 -83.25 -0.87 -8.97 16 27 C 0.01 0.16 7.26 72.14 0.52 0.68 16 28 C 0.01 0.17 7.26 72.14 0.52 0.70 16 29 O -0.30 -7.05 10.16 -70.35 -0.71 -7.76 16 30 H 0.08 1.51 6.25 -2.38 -0.01 1.50 16 31 H 0.04 1.12 6.61 -2.39 -0.02 1.11 16 32 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 33 H 0.06 1.78 7.53 -2.39 -0.02 1.76 16 34 H 0.11 1.94 2.43 -2.39 -0.01 1.94 16 35 H 0.08 1.91 7.63 -2.39 -0.02 1.90 16 36 H 0.10 2.46 3.33 -16.71 -0.06 2.40 16 37 H 0.06 2.01 4.27 -2.43 -0.01 2.00 16 38 H 0.06 2.30 5.23 -2.39 -0.01 2.29 16 39 H 0.09 2.29 6.71 -2.39 -0.02 2.27 16 40 H 0.03 1.31 7.36 -2.39 -0.02 1.29 16 41 H -0.01 -0.66 7.78 -2.39 -0.02 -0.68 16 42 H 0.04 1.86 7.15 -2.39 -0.02 1.84 16 43 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 44 H 0.19 4.85 0.81 -6.29 -0.01 4.85 16 45 H 0.08 0.93 5.72 -2.39 -0.01 0.92 16 46 H 0.06 0.94 6.57 -2.39 -0.02 0.93 16 47 H 0.13 1.16 8.14 -2.38 -0.02 1.14 16 48 H 0.13 4.86 7.75 -2.91 -0.02 4.83 16 49 H 0.16 1.08 8.14 -2.39 -0.02 1.06 16 50 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 51 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 52 H 0.16 0.90 8.14 -2.38 -0.02 0.88 16 Total: -1.00 -80.37 381.61 5.14 -75.23 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.94 Total: 18.41 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: 6.05 Total: -1.15 kcal Atomic # 7 Polarization: -81.91 SS G_CDS: -1.42 Total: -83.34 kcal Atomic # 8 Polarization: -54.39 SS G_CDS: -2.45 Total: -56.84 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -80.37 5.14 -75.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097165013.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.764 kcal (2) G-P(sol) polarization free energy of solvation -80.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds