Wall clock time and date at job start Tue Mar 31 2020 06:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38254 * 119.99893 * 2 1 4 4 C 1.38209 * 119.99858 * 179.97438 * 3 2 1 5 5 C 1.38259 * 120.00249 * 359.97438 * 4 3 2 6 6 C 1.38214 * 119.99525 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.99753 * 180.02562 * 6 5 4 8 8 H 1.08996 * 110.36628 * 197.64841 * 7 6 5 9 9 C 1.54380 * 110.41455 * 75.17159 * 7 6 5 10 10 C 1.54258 * 105.06240 * 217.37127 * 9 7 6 11 11 C 1.54382 * 105.06092 * 359.97438 * 10 9 7 12 12 N 1.48559 * 110.40991 * 319.99844 * 7 6 5 13 13 C 1.38111 * 111.00096 * 277.81576 * 12 7 6 14 14 N 1.32864 * 120.81260 * 0.03062 * 13 12 7 15 15 C 1.32121 * 121.19415 * 179.97438 * 14 13 12 16 16 N 1.31507 * 122.64556 * 359.97438 * 15 14 13 17 17 C 1.33198 * 120.68463 * 359.70214 * 16 15 14 18 18 C 1.40815 * 120.81226 * 179.97438 * 13 12 7 19 19 C 1.41172 * 134.70097 * 0.02562 * 18 13 12 20 20 N 1.30244 * 108.46811 * 179.97438 * 19 18 13 21 21 N 1.36315 * 134.61835 * 179.54974 * 17 16 15 22 22 C 1.46506 * 125.86766 * 0.78419 * 21 17 16 23 23 C 1.50696 * 109.46871 * 269.71470 * 22 21 17 24 24 H 1.07999 * 120.00319 * 0.02562 * 23 22 21 25 25 C 1.37885 * 119.99717 * 180.02562 * 23 22 21 26 26 N 1.31516 * 119.99913 * 180.02562 * 25 23 22 27 27 Si 1.86798 * 119.99766 * 0.02562 * 25 23 22 28 28 H 1.48500 * 109.47353 * 269.99586 * 27 25 23 29 29 H 1.48501 * 109.47293 * 30.00037 * 27 25 23 30 30 H 1.48504 * 109.46680 * 149.99835 * 27 25 23 31 31 C 1.38210 * 119.99964 * 180.17529 * 2 1 3 32 32 H 1.08993 * 109.47235 * 89.99447 * 1 2 3 33 33 H 1.08997 * 109.47004 * 209.99908 * 1 2 3 34 34 H 1.09004 * 109.46819 * 329.99056 * 1 2 3 35 35 H 1.08001 * 120.00191 * 0.02562 * 3 2 1 36 36 H 1.08003 * 119.99836 * 180.02562 * 4 3 2 37 37 H 1.07999 * 120.00278 * 179.97438 * 5 4 3 38 38 H 1.09005 * 110.32179 * 336.26679 * 9 7 6 39 39 H 1.08994 * 110.32525 * 98.36655 * 9 7 6 40 40 H 1.08997 * 110.32512 * 118.89441 * 10 9 7 41 41 H 1.09001 * 110.32334 * 241.10160 * 10 9 7 42 42 H 1.09007 * 110.41030 * 265.07799 * 11 10 9 43 43 H 1.08992 * 110.41256 * 142.63439 * 11 10 9 44 44 H 1.07998 * 118.67889 * 180.02562 * 15 14 13 45 45 H 1.08001 * 125.76578 * 359.97438 * 19 18 13 46 46 H 1.09005 * 109.46943 * 149.71791 * 22 21 17 47 47 H 1.09002 * 109.47064 * 29.72053 * 22 21 17 48 48 H 0.97001 * 119.99646 * 179.97438 * 26 25 23 49 49 H 1.08002 * 119.99829 * 0.06005 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2718 0.0000 0.0016 6 6 3.5806 -1.1969 0.0027 7 6 4.3341 -2.5020 0.0044 8 1 3.6806 -3.3178 -0.3047 9 6 4.9235 -2.7817 1.4036 10 6 6.2969 -3.4316 1.1375 11 6 6.4216 -3.4907 -0.4001 12 7 5.5172 -2.4184 -0.8902 13 6 5.1590 -2.6365 -2.2061 14 7 3.8955 -2.8814 -2.5359 15 6 3.5444 -3.0906 -3.7923 16 7 4.4088 -3.0700 -4.7833 17 6 5.6984 -2.8267 -4.5554 18 6 6.1239 -2.6037 -3.2312 19 6 7.5175 -2.3825 -3.2765 20 7 7.9090 -2.4694 -4.5157 21 7 6.8107 -2.7468 -5.3394 22 6 6.8497 -2.9166 -6.7940 23 6 7.0889 -4.3674 -7.1241 24 1 7.2003 -5.0907 -6.3299 25 6 7.1656 -4.7714 -8.4402 26 7 7.3739 -6.0376 -8.7283 27 14 6.9736 -3.5202 -9.8139 28 1 5.5408 -3.4134 -10.1895 29 1 7.4638 -2.1972 -9.3506 30 1 7.7635 -3.9554 -10.9937 31 6 2.1981 -1.1969 -0.0037 32 1 -0.3633 0.0001 -1.0276 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3633 0.8899 0.5140 35 1 1.6583 2.1327 0.0004 36 1 4.1204 2.1327 0.0010 37 1 5.3518 0.0000 0.0016 38 1 5.0462 -1.8499 1.9558 39 1 4.2796 -3.4661 1.9558 40 1 7.0938 -2.8190 1.5591 41 1 6.3281 -4.4366 1.5584 42 1 6.0959 -4.4626 -0.7709 43 1 7.4484 -3.2907 -0.7062 44 1 2.5057 -3.2855 -4.0147 45 1 8.1518 -2.1761 -2.4271 46 1 7.6561 -2.3118 -7.2089 47 1 5.8993 -2.5983 -7.2226 48 1 7.4274 -6.3218 -9.6542 49 1 1.6581 -2.1322 -0.0075 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097199741.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:35 Heat of formation + Delta-G solvation = 138.028184 kcal Electronic energy + Delta-G solvation = -32399.201934 eV Core-core repulsion = 28327.259984 eV Total energy + Delta-G solvation = -4071.941950 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.175 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.12014 -41.22164 -39.88327 -39.09082 -35.88854 -34.97731 -33.79003 -33.56235 -32.77184 -32.31622 -30.46212 -29.75342 -28.85653 -27.58270 -25.46905 -25.36691 -24.27112 -23.42436 -22.90865 -22.13383 -21.50063 -20.71803 -19.32122 -19.07683 -18.63159 -17.86014 -17.57408 -16.86623 -16.69478 -16.29749 -16.11622 -15.89828 -15.57276 -15.30961 -15.15629 -14.86332 -14.57024 -14.52926 -14.46162 -14.04553 -13.88693 -13.85975 -13.65444 -13.52708 -13.18071 -13.07340 -12.95143 -12.70609 -12.55861 -12.37586 -12.31003 -12.22398 -12.00852 -11.88198 -11.78670 -11.74653 -11.63288 -11.34301 -10.95015 -10.61972 -10.26909 -9.87636 -9.58841 -9.44440 -9.36660 -8.46581 -6.57113 -0.37432 0.25534 0.52739 0.60111 1.19213 1.30917 1.33838 1.42748 1.48826 2.21589 2.31538 2.78211 2.84674 2.91130 3.08233 3.19607 3.52683 3.55084 3.73553 3.76491 3.92952 4.02687 4.07775 4.12273 4.19570 4.29625 4.34914 4.40591 4.45425 4.55370 4.60456 4.64041 4.66342 4.77262 4.82426 4.87737 4.92503 4.94258 5.02165 5.08519 5.15268 5.16339 5.20407 5.25522 5.36323 5.39843 5.45341 5.62051 5.68156 5.78290 5.78588 5.94102 6.02750 6.20079 6.23585 6.41527 6.52098 7.05298 7.19400 8.70385 Molecular weight = 363.18amu Principal moments of inertia in cm(-1) A = 0.013179 B = 0.002715 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.067786 B =10312.137789 C =11309.920981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.100 4.100 3 C -0.134 4.134 4 C -0.133 4.133 5 C -0.116 4.116 6 C -0.065 4.065 7 C 0.111 3.889 8 H 0.079 0.921 9 C -0.113 4.113 10 C -0.112 4.112 11 C 0.037 3.963 12 N -0.442 5.442 13 C 0.438 3.562 14 N -0.581 5.581 15 C 0.356 3.644 16 N -0.577 5.577 17 C 0.327 3.673 18 C -0.300 4.300 19 C 0.106 3.894 20 N -0.274 5.274 21 N -0.364 5.364 22 C 0.251 3.749 23 C -0.549 4.549 24 H 0.022 0.978 25 C 0.023 3.977 26 N -0.935 5.935 27 Si 0.951 3.049 28 H -0.259 1.259 29 H -0.244 1.244 30 H -0.270 1.270 31 C -0.111 4.111 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.123 0.877 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.045 0.955 43 H 0.105 0.895 44 H 0.230 0.770 45 H 0.236 0.764 46 H 0.058 0.942 47 H 0.052 0.948 48 H 0.275 0.725 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.896 12.495 25.374 29.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.100 4.100 3 C -0.152 4.152 4 C -0.150 4.150 5 C -0.135 4.135 6 C -0.065 4.065 7 C 0.004 3.996 8 H 0.097 0.903 9 C -0.151 4.151 10 C -0.150 4.150 11 C -0.088 4.088 12 N -0.160 5.160 13 C 0.188 3.812 14 N -0.305 5.305 15 C 0.064 3.936 16 N -0.301 5.301 17 C 0.080 3.920 18 C -0.316 4.316 19 C -0.090 4.090 20 N -0.089 5.089 21 N -0.151 5.151 22 C 0.131 3.869 23 C -0.587 4.587 24 H 0.040 0.960 25 C -0.177 4.177 26 N -0.574 5.574 27 Si 0.772 3.228 28 H -0.184 1.184 29 H -0.167 1.167 30 H -0.194 1.194 31 C -0.130 4.130 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.151 0.849 36 H 0.148 0.852 37 H 0.141 0.859 38 H 0.100 0.900 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.064 0.936 43 H 0.124 0.876 44 H 0.246 0.754 45 H 0.252 0.748 46 H 0.076 0.924 47 H 0.070 0.930 48 H 0.084 0.916 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.420 12.733 23.969 28.730 hybrid contribution -0.093 -0.648 -0.835 1.061 sum -9.513 12.086 23.134 27.781 Atomic orbital electron populations 1.20792 0.89794 1.03513 1.02591 1.20166 0.97222 0.92957 0.99626 1.21258 0.94383 0.98169 1.01424 1.21351 0.94756 0.98402 1.00536 1.21071 1.00342 0.92006 1.00034 1.19538 0.93431 0.93920 0.99616 1.21615 0.89920 0.95488 0.92538 0.90254 1.22431 0.96524 1.02278 0.93853 1.22351 0.97881 1.02923 0.91869 1.23404 0.97488 0.90598 0.97281 1.62126 1.14860 1.41573 0.97400 1.19804 0.87150 0.83297 0.90989 1.68509 1.17486 1.22669 1.21811 1.25270 0.99573 0.87021 0.81759 1.67529 1.00374 1.23079 1.39134 1.19409 0.88851 0.94243 0.89522 1.19839 0.97076 1.20576 0.94093 1.24298 0.92420 0.96904 0.95377 1.76923 1.09805 1.19204 1.02920 1.48782 1.01612 1.56672 1.08038 1.19688 0.98867 0.96773 0.71590 1.21176 1.52203 0.92138 0.93202 0.95985 1.25805 0.93006 0.97752 1.01149 1.70019 1.49199 1.17539 1.20614 0.85680 0.79722 0.79452 0.77985 1.18355 1.16728 1.19435 1.20986 0.93397 0.98066 1.00546 0.91237 0.90789 0.90623 0.84946 0.85155 0.85865 0.90027 0.89105 0.88683 0.88870 0.93650 0.87635 0.75396 0.74771 0.92426 0.92974 0.91595 0.85627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 10.01 71.24 0.71 -0.74 16 2 C -0.10 -1.85 5.88 -19.86 -0.12 -1.96 16 3 C -0.13 -2.49 9.70 22.27 0.22 -2.27 16 4 C -0.13 -2.60 10.05 22.27 0.22 -2.38 16 5 C -0.12 -2.47 9.16 22.27 0.20 -2.26 16 6 C -0.06 -1.35 4.47 -19.87 -0.09 -1.43 16 7 C 0.11 2.14 2.04 44.32 0.09 2.23 16 8 H 0.08 1.73 7.05 -2.39 -0.02 1.71 16 9 C -0.11 -1.43 6.52 31.49 0.21 -1.23 16 10 C -0.11 -1.23 7.00 31.49 0.22 -1.01 16 11 C 0.04 0.65 5.93 86.45 0.51 1.16 16 12 N -0.44 -9.79 4.40 -667.22 -2.94 -12.73 16 13 C 0.44 13.19 6.02 133.64 0.80 14.00 16 14 N -0.58 -17.65 8.34 -197.01 -1.64 -19.30 16 15 C 0.36 11.71 12.24 180.87 2.21 13.92 16 16 N -0.58 -24.42 10.47 -198.10 -2.07 -26.50 16 17 C 0.33 14.55 8.04 134.15 1.08 15.63 16 18 C -0.30 -10.81 5.82 -21.28 -0.12 -10.93 16 19 C 0.11 3.50 11.41 85.65 0.98 4.48 16 20 N -0.27 -11.72 12.45 -56.46 -0.70 -12.43 16 21 N -0.36 -17.62 3.63 -348.92 -1.27 -18.89 16 22 C 0.25 12.95 5.26 85.63 0.45 13.40 16 23 C -0.55 -33.34 9.94 25.60 0.25 -33.08 16 24 H 0.02 1.53 8.06 -2.91 -0.02 1.50 16 25 C 0.02 1.34 5.47 84.66 0.46 1.81 16 26 N -0.94 -58.79 13.96 21.45 0.30 -58.49 16 27 Si 0.95 43.41 27.47 68.60 1.88 45.29 16 28 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 29 H -0.24 -10.28 6.54 99.48 0.65 -9.63 16 30 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 31 C -0.11 -2.23 9.34 22.27 0.21 -2.02 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.07 0.83 8.09 -2.39 -0.02 0.82 16 34 H 0.07 0.80 8.09 -2.39 -0.02 0.78 16 35 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 36 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 37 H 0.12 2.56 7.75 -2.91 -0.02 2.54 16 38 H 0.08 1.01 7.71 -2.38 -0.02 0.99 16 39 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.04 0.94 7.97 -2.38 -0.02 0.92 16 43 H 0.11 1.63 6.98 -2.39 -0.02 1.61 16 44 H 0.23 5.51 8.06 -2.91 -0.02 5.49 16 45 H 0.24 5.11 7.35 -2.91 -0.02 5.09 16 46 H 0.06 2.86 7.20 -2.38 -0.02 2.84 16 47 H 0.05 2.63 7.57 -2.39 -0.02 2.61 16 48 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 49 H 0.13 2.25 8.04 -2.91 -0.02 2.23 16 Total: -1.00 -78.59 402.68 2.98 -75.61 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 0.91 Total: 20.13 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 8.51 Total: 7.30 kcal Atomic # 7 Polarization: -140.01 SS G_CDS: -8.32 Total: -148.33 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.88 Total: 45.29 kcal Total: -78.59 2.98 -75.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199741.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.641 kcal (2) G-P(sol) polarization free energy of solvation -78.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds