Wall clock time and date at job start Tue Mar 31 2020 06:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38260 * 119.99435 * 2 1 4 4 C 1.38217 * 119.99625 * 179.97438 * 3 2 1 5 5 C 1.38255 * 119.99953 * 359.76934 * 4 3 2 6 6 C 1.38214 * 119.99795 * 0.46443 * 5 4 3 7 7 C 1.50705 * 119.99716 * 179.78486 * 6 5 4 8 8 H 1.08999 * 110.72202 * 158.08046 * 7 6 5 9 9 C 1.54934 * 110.66972 * 281.17959 * 7 6 5 10 10 C 1.54597 * 102.92105 * 155.84957 * 9 7 6 11 11 C 1.53990 * 105.14143 * 338.04435 * 10 9 7 12 12 N 1.47907 * 107.05675 * 358.77466 * 11 10 9 13 13 C 1.38109 * 110.99905 * 145.84884 * 12 11 10 14 14 N 1.32855 * 120.81609 * 120.12340 * 13 12 11 15 15 C 1.32123 * 121.19493 * 179.97438 * 14 13 12 16 16 N 1.31499 * 122.64851 * 0.02562 * 15 14 13 17 17 C 1.33204 * 120.68142 * 0.02562 * 16 15 14 18 18 C 1.40812 * 120.81149 * 299.84270 * 13 12 11 19 19 C 1.41175 * 134.69620 * 0.68702 * 18 13 12 20 20 N 1.30250 * 108.46811 * 179.54641 * 19 18 13 21 21 N 1.36316 * 134.61856 * 179.97438 * 17 16 15 22 22 C 1.46501 * 125.86835 * 0.02562 * 21 17 16 23 23 C 1.50692 * 109.47415 * 89.99807 * 22 21 17 24 24 H 1.07998 * 120.00201 * 359.97438 * 23 22 21 25 25 C 1.37884 * 120.00042 * 179.97438 * 23 22 21 26 26 N 1.31509 * 119.99923 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00029 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.47114 * 359.97438 * 27 25 23 29 29 H 1.48493 * 109.47204 * 119.99919 * 27 25 23 30 30 H 1.48495 * 109.46881 * 240.00007 * 27 25 23 31 31 C 1.38203 * 120.00281 * 179.97438 * 2 1 3 32 32 H 1.08999 * 109.46902 * 270.02013 * 1 2 3 33 33 H 1.09000 * 109.47331 * 30.02163 * 1 2 3 34 34 H 1.09001 * 109.46854 * 150.02211 * 1 2 3 35 35 H 1.08001 * 120.00493 * 359.97438 * 3 2 1 36 36 H 1.08002 * 120.00007 * 179.97438 * 4 3 2 37 37 H 1.08001 * 120.00072 * 180.24556 * 5 4 3 38 38 H 1.09000 * 110.72047 * 37.49263 * 9 7 6 39 39 H 1.09001 * 110.72140 * 274.20885 * 9 7 6 40 40 H 1.09005 * 110.30714 * 96.95804 * 10 9 7 41 41 H 1.09005 * 110.30628 * 219.12370 * 10 9 7 42 42 H 1.08996 * 109.92296 * 118.12992 * 11 10 9 43 43 H 1.09004 * 109.91631 * 239.22909 * 11 10 9 44 44 H 1.08002 * 118.67767 * 179.97438 * 15 14 13 45 45 H 1.08003 * 125.76386 * 359.30947 * 19 18 13 46 46 H 1.09001 * 109.46785 * 209.99712 * 22 21 17 47 47 H 1.09001 * 109.47488 * 329.99105 * 22 21 17 48 48 H 0.97003 * 120.00500 * 180.02562 * 26 25 23 49 49 H 1.08002 * 119.99901 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2717 0.0002 0.0059 6 6 3.5806 -1.1968 0.0010 7 6 4.3343 -2.5019 0.0019 8 1 3.7065 -3.3095 0.3786 9 6 4.8570 -2.8326 -1.4186 10 6 6.0567 -3.7660 -1.1368 11 6 6.4749 -3.4572 0.3127 12 7 5.5790 -2.3879 0.8042 13 6 5.3158 -2.5429 2.1511 14 7 5.6413 -1.5938 3.0219 15 6 5.3925 -1.7340 4.3119 16 7 4.8161 -2.8055 4.8108 17 6 4.4531 -3.8131 4.0189 18 6 4.6906 -3.7085 2.6344 19 6 4.2175 -4.8997 2.0426 20 7 3.7261 -5.6590 2.9798 21 7 3.8549 -5.0214 4.2200 22 6 3.4182 -5.5587 5.5111 23 6 1.9939 -5.1420 5.7729 24 1 1.4667 -4.5370 5.0500 25 6 1.3636 -5.5330 6.9352 26 7 2.0054 -6.2701 7.8152 27 14 -0.4022 -5.0171 7.2594 28 1 -0.8952 -4.1980 6.1229 29 1 -1.2524 -6.2259 7.4044 30 1 -0.4626 -4.2166 8.5086 31 6 2.1981 -1.1968 0.0005 32 1 -0.3633 0.0004 1.0277 33 1 -0.3634 0.8898 -0.5142 34 1 -0.3633 -0.8902 -0.5135 35 1 1.6582 2.1327 -0.0004 36 1 4.1204 2.1328 0.0001 37 1 5.3517 0.0002 0.0103 38 1 5.1845 -1.9271 -1.9295 39 1 4.0937 -3.3501 -1.9997 40 1 5.7543 -4.8092 -1.2292 41 1 6.8758 -3.5466 -1.8218 42 1 6.3623 -4.3487 0.9297 43 1 7.5105 -3.1180 0.3361 44 1 5.6747 -0.9369 4.9838 45 1 4.2532 -5.1390 0.9900 46 1 3.4807 -6.6467 5.4917 47 1 4.0611 -5.1720 6.3019 48 1 1.5620 -6.5456 8.6328 49 1 1.6581 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097199742.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:40 Heat of formation + Delta-G solvation = 154.317894 kcal Electronic energy + Delta-G solvation = -32883.638006 eV Core-core repulsion = 28812.402431 eV Total energy + Delta-G solvation = -4071.235575 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.175 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.89756 -40.06144 -38.72926 -38.16724 -34.18693 -33.45450 -32.95586 -31.73197 -31.61648 -31.38745 -29.14189 -28.13145 -27.33211 -26.79253 -24.51541 -23.70574 -22.90989 -22.38218 -21.98729 -21.29116 -20.41015 -19.76308 -17.80792 -17.40222 -16.79038 -16.63741 -16.43669 -15.82025 -15.24535 -15.18324 -14.83447 -14.64146 -14.36813 -14.21099 -14.03426 -13.84436 -13.57150 -13.22685 -13.04457 -12.98812 -12.81647 -12.55262 -12.29922 -12.28845 -12.21618 -11.79255 -11.69693 -11.58426 -11.19018 -11.13411 -11.05187 -10.89315 -10.87457 -10.78915 -10.49932 -10.37443 -10.34501 -9.78104 -9.24000 -8.80789 -8.72763 -8.67729 -8.55731 -8.47202 -8.07669 -6.29202 -4.36229 0.82792 1.34897 1.45415 1.68018 2.75437 2.84459 3.18728 3.26054 3.29698 3.32162 3.76734 4.06608 4.26355 4.40050 4.44423 4.52739 4.55526 4.68999 4.77124 4.82929 4.86063 4.91341 5.06236 5.09555 5.19381 5.22078 5.25450 5.29269 5.30741 5.46264 5.53551 5.54068 5.57637 5.60779 5.66319 5.70195 5.78607 5.82800 5.92547 6.03567 6.14613 6.24012 6.38823 6.43651 6.54976 6.60064 6.75465 6.91003 6.93904 7.00887 7.05891 7.24250 7.58459 7.72588 7.81776 8.01875 8.55535 8.67379 9.29441 10.79115 Molecular weight = 363.18amu Principal moments of inertia in cm(-1) A = 0.009055 B = 0.003515 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3091.597533 B = 7964.683761 C = 9476.626206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.091 4.091 3 C -0.122 4.122 4 C -0.123 4.123 5 C -0.083 4.083 6 C -0.073 4.073 7 C 0.110 3.890 8 H 0.076 0.924 9 C -0.111 4.111 10 C -0.129 4.129 11 C 0.042 3.958 12 N -0.469 5.469 13 C 0.429 3.571 14 N -0.535 5.535 15 C 0.335 3.665 16 N -0.518 5.518 17 C 0.346 3.654 18 C -0.314 4.314 19 C 0.054 3.946 20 N -0.222 5.222 21 N -0.330 5.330 22 C 0.262 3.738 23 C -0.536 4.536 24 H 0.062 0.938 25 C 0.068 3.932 26 N -0.890 5.890 27 Si 0.907 3.093 28 H -0.272 1.272 29 H -0.280 1.280 30 H -0.279 1.279 31 C -0.112 4.112 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.133 0.867 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.059 0.941 43 H 0.088 0.912 44 H 0.200 0.800 45 H 0.184 0.816 46 H 0.056 0.944 47 H 0.060 0.940 48 H 0.268 0.732 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.942 10.283 -19.878 23.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.140 4.140 4 C -0.141 4.141 5 C -0.102 4.102 6 C -0.074 4.074 7 C 0.003 3.997 8 H 0.094 0.906 9 C -0.149 4.149 10 C -0.167 4.167 11 C -0.085 4.085 12 N -0.191 5.191 13 C 0.178 3.822 14 N -0.253 5.253 15 C 0.042 3.958 16 N -0.238 5.238 17 C 0.097 3.903 18 C -0.332 4.332 19 C -0.141 4.141 20 N -0.038 5.038 21 N -0.118 5.118 22 C 0.146 3.854 23 C -0.574 4.574 24 H 0.080 0.920 25 C -0.136 4.136 26 N -0.527 5.527 27 Si 0.734 3.266 28 H -0.197 1.197 29 H -0.205 1.205 30 H -0.205 1.205 31 C -0.130 4.130 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.151 0.849 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.106 0.894 44 H 0.217 0.783 45 H 0.201 0.799 46 H 0.074 0.926 47 H 0.078 0.922 48 H 0.078 0.922 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.745 10.099 -18.558 21.895 hybrid contribution -1.230 -0.396 0.054 1.293 sum 4.515 9.703 -18.504 21.376 Atomic orbital electron populations 1.20778 0.91391 1.02459 1.02406 1.19805 0.95902 0.93064 1.00368 1.21009 0.94429 0.97224 1.01306 1.21136 0.94103 0.98123 1.00723 1.21012 1.00685 0.91081 0.97393 1.19485 0.92852 0.94215 1.00832 1.21856 0.89414 0.95104 0.93360 0.90583 1.22536 0.97357 1.00229 0.94794 1.22434 0.98652 0.99964 0.95682 1.22989 0.97526 0.92475 0.95534 1.61274 1.12362 1.46417 0.99069 1.19459 0.86896 0.85704 0.90125 1.68060 1.23551 1.30199 1.03481 1.24738 0.89324 0.92903 0.88863 1.67505 1.15684 1.00790 1.39838 1.19099 0.93147 0.88877 0.89155 1.20816 1.15054 1.00591 0.96693 1.23522 0.99867 0.91378 0.99337 1.76942 1.16702 1.20675 0.89477 1.49579 1.44499 1.10090 1.07585 1.19861 0.96508 0.96018 0.73043 1.21255 0.96580 1.34369 1.05225 0.92014 1.24893 0.98911 0.94506 0.95251 1.69919 1.37444 1.35523 1.09840 0.86286 0.83385 0.78506 0.78423 1.19681 1.20538 1.20491 1.20870 0.93469 0.97692 1.01016 0.91231 0.91732 0.91653 0.86523 0.86254 0.84948 0.90014 0.90196 0.90756 0.90255 0.92265 0.89369 0.78314 0.79893 0.92633 0.92176 0.92213 0.86460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.01 36.01 0.36 -0.76 16 2 C -0.09 -1.09 5.88 -104.62 -0.62 -1.71 16 3 C -0.12 -1.38 9.70 -39.58 -0.38 -1.76 16 4 C -0.12 -1.40 10.05 -39.58 -0.40 -1.79 16 5 C -0.08 -1.03 9.32 -39.58 -0.37 -1.40 16 6 C -0.07 -0.93 4.85 -104.62 -0.51 -1.43 16 7 C 0.11 1.26 2.30 -66.94 -0.15 1.11 16 8 H 0.08 0.96 5.22 -51.93 -0.27 0.69 16 9 C -0.11 -0.91 6.49 -24.87 -0.16 -1.07 16 10 C -0.13 -0.95 6.93 -25.38 -0.18 -1.12 16 11 C 0.04 0.42 6.30 -2.75 -0.02 0.41 16 12 N -0.47 -5.96 4.18 -162.73 -0.68 -6.64 16 13 C 0.43 6.93 5.71 -154.86 -0.88 6.04 16 14 N -0.54 -9.03 10.45 -13.63 -0.14 -9.18 16 15 C 0.34 5.75 12.24 -92.12 -1.13 4.63 16 16 N -0.52 -10.89 10.47 -13.97 -0.15 -11.03 16 17 C 0.35 7.56 8.04 -156.22 -1.26 6.30 16 18 C -0.31 -5.69 4.95 -106.82 -0.53 -6.22 16 19 C 0.05 0.91 9.28 -17.11 -0.16 0.75 16 20 N -0.22 -4.63 12.45 30.80 0.38 -4.25 16 21 N -0.33 -7.75 3.63 -61.64 -0.22 -7.98 16 22 C 0.26 6.89 6.19 -5.20 -0.03 6.85 16 23 C -0.54 -15.12 9.39 -34.44 -0.32 -15.45 16 24 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 25 C 0.07 1.89 5.46 -17.82 -0.10 1.80 16 26 N -0.89 -25.44 13.29 55.43 0.74 -24.70 16 27 Si 0.91 21.53 29.54 -169.99 -5.02 16.51 16 28 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 29 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 30 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 31 C -0.11 -1.43 9.35 -39.59 -0.37 -1.80 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 34 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 35 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.13 1.61 7.61 -52.49 -0.40 1.21 16 38 H 0.08 0.67 8.01 -51.93 -0.42 0.25 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.67 5.90 -51.93 -0.31 0.36 16 43 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.20 2.59 8.06 -52.49 -0.42 2.17 16 45 H 0.18 2.25 7.16 -52.48 -0.38 1.88 16 46 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 47 H 0.06 1.65 8.14 -51.93 -0.42 1.23 16 48 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 49 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 403.18 15.07 6.08 6.08 Total: -1.00 -32.41 403.18 -13.02 -45.43 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -6.80 Total: 2.39 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -7.20 Total: -6.63 kcal Atomic # 7 Polarization: -63.71 SS G_CDS: -0.07 Total: -63.78 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.41 -13.02 -45.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199742.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.746 kcal (2) G-P(sol) polarization free energy of solvation -32.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds