Wall clock time and date at job start Tue Mar 31 2020 06:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38260 * 119.99435 * 2 1 4 4 C 1.38217 * 119.99625 * 179.97438 * 3 2 1 5 5 C 1.38255 * 119.99953 * 359.76934 * 4 3 2 6 6 C 1.38214 * 119.99795 * 0.46443 * 5 4 3 7 7 C 1.50705 * 119.99716 * 179.78486 * 6 5 4 8 8 H 1.08999 * 110.72202 * 158.08046 * 7 6 5 9 9 C 1.54934 * 110.66972 * 281.17959 * 7 6 5 10 10 C 1.54597 * 102.92105 * 155.84957 * 9 7 6 11 11 C 1.53990 * 105.14143 * 338.04435 * 10 9 7 12 12 N 1.47907 * 107.05675 * 358.77466 * 11 10 9 13 13 C 1.38109 * 110.99905 * 145.84884 * 12 11 10 14 14 N 1.32855 * 120.81609 * 120.12340 * 13 12 11 15 15 C 1.32123 * 121.19493 * 179.97438 * 14 13 12 16 16 N 1.31499 * 122.64851 * 0.02562 * 15 14 13 17 17 C 1.33204 * 120.68142 * 0.02562 * 16 15 14 18 18 C 1.40812 * 120.81149 * 299.84270 * 13 12 11 19 19 C 1.41175 * 134.69620 * 0.68702 * 18 13 12 20 20 N 1.30250 * 108.46811 * 179.54641 * 19 18 13 21 21 N 1.36316 * 134.61856 * 179.97438 * 17 16 15 22 22 C 1.46501 * 125.86835 * 0.02562 * 21 17 16 23 23 C 1.50692 * 109.47415 * 89.99807 * 22 21 17 24 24 H 1.07998 * 120.00201 * 359.97438 * 23 22 21 25 25 C 1.37884 * 120.00042 * 179.97438 * 23 22 21 26 26 N 1.31509 * 119.99923 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00029 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.47114 * 359.97438 * 27 25 23 29 29 H 1.48493 * 109.47204 * 119.99919 * 27 25 23 30 30 H 1.48495 * 109.46881 * 240.00007 * 27 25 23 31 31 C 1.38203 * 120.00281 * 179.97438 * 2 1 3 32 32 H 1.08999 * 109.46902 * 270.02013 * 1 2 3 33 33 H 1.09000 * 109.47331 * 30.02163 * 1 2 3 34 34 H 1.09001 * 109.46854 * 150.02211 * 1 2 3 35 35 H 1.08001 * 120.00493 * 359.97438 * 3 2 1 36 36 H 1.08002 * 120.00007 * 179.97438 * 4 3 2 37 37 H 1.08001 * 120.00072 * 180.24556 * 5 4 3 38 38 H 1.09000 * 110.72047 * 37.49263 * 9 7 6 39 39 H 1.09001 * 110.72140 * 274.20885 * 9 7 6 40 40 H 1.09005 * 110.30714 * 96.95804 * 10 9 7 41 41 H 1.09005 * 110.30628 * 219.12370 * 10 9 7 42 42 H 1.08996 * 109.92296 * 118.12992 * 11 10 9 43 43 H 1.09004 * 109.91631 * 239.22909 * 11 10 9 44 44 H 1.08002 * 118.67767 * 179.97438 * 15 14 13 45 45 H 1.08003 * 125.76386 * 359.30947 * 19 18 13 46 46 H 1.09001 * 109.46785 * 209.99712 * 22 21 17 47 47 H 1.09001 * 109.47488 * 329.99105 * 22 21 17 48 48 H 0.97003 * 120.00500 * 180.02562 * 26 25 23 49 49 H 1.08002 * 119.99901 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2717 0.0002 0.0059 6 6 3.5806 -1.1968 0.0010 7 6 4.3343 -2.5019 0.0019 8 1 3.7065 -3.3095 0.3786 9 6 4.8570 -2.8326 -1.4186 10 6 6.0567 -3.7660 -1.1368 11 6 6.4749 -3.4572 0.3127 12 7 5.5790 -2.3879 0.8042 13 6 5.3158 -2.5429 2.1511 14 7 5.6413 -1.5938 3.0219 15 6 5.3925 -1.7340 4.3119 16 7 4.8161 -2.8055 4.8108 17 6 4.4531 -3.8131 4.0189 18 6 4.6906 -3.7085 2.6344 19 6 4.2175 -4.8997 2.0426 20 7 3.7261 -5.6590 2.9798 21 7 3.8549 -5.0214 4.2200 22 6 3.4182 -5.5587 5.5111 23 6 1.9939 -5.1420 5.7729 24 1 1.4667 -4.5370 5.0500 25 6 1.3636 -5.5330 6.9352 26 7 2.0054 -6.2701 7.8152 27 14 -0.4022 -5.0171 7.2594 28 1 -0.8952 -4.1980 6.1229 29 1 -1.2524 -6.2259 7.4044 30 1 -0.4626 -4.2166 8.5086 31 6 2.1981 -1.1968 0.0005 32 1 -0.3633 0.0004 1.0277 33 1 -0.3634 0.8898 -0.5142 34 1 -0.3633 -0.8902 -0.5135 35 1 1.6582 2.1327 -0.0004 36 1 4.1204 2.1328 0.0001 37 1 5.3517 0.0002 0.0103 38 1 5.1845 -1.9271 -1.9295 39 1 4.0937 -3.3501 -1.9997 40 1 5.7543 -4.8092 -1.2292 41 1 6.8758 -3.5466 -1.8218 42 1 6.3623 -4.3487 0.9297 43 1 7.5105 -3.1180 0.3361 44 1 5.6747 -0.9369 4.9838 45 1 4.2532 -5.1390 0.9900 46 1 3.4807 -6.6467 5.4917 47 1 4.0611 -5.1720 6.3019 48 1 1.5620 -6.5456 8.6328 49 1 1.6581 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097199742.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:39 Heat of formation + Delta-G solvation = 137.838122 kcal Electronic energy + Delta-G solvation = -32884.352622 eV Core-core repulsion = 28812.402431 eV Total energy + Delta-G solvation = -4071.950192 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.175 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.30286 -41.08375 -39.95935 -39.28408 -35.91702 -34.99778 -33.80993 -33.37901 -32.71384 -32.52980 -30.43589 -29.25135 -28.94888 -27.63558 -25.83697 -25.54520 -24.21157 -23.53727 -22.89858 -22.21485 -21.59502 -20.87704 -19.25640 -18.88509 -18.70098 -17.85308 -17.51107 -16.83067 -16.73297 -16.56955 -16.10194 -15.89201 -15.58029 -15.33543 -15.14374 -15.05249 -14.68394 -14.63304 -14.03579 -14.01930 -13.90736 -13.85087 -13.66600 -13.42449 -13.11915 -13.05474 -13.00821 -12.82001 -12.63192 -12.53244 -12.41404 -12.29796 -12.05658 -11.90256 -11.82526 -11.69239 -11.66572 -11.40283 -10.81227 -10.52993 -10.23898 -9.76169 -9.70943 -9.66734 -9.40480 -8.41844 -6.58784 -0.53698 0.19065 0.45254 0.54320 1.17462 1.30968 1.31657 1.36234 1.45442 2.22494 2.26861 2.67573 2.86722 2.88155 3.10343 3.13514 3.36584 3.57178 3.69434 3.79279 3.85791 4.00455 4.01287 4.05846 4.15438 4.20770 4.25457 4.34933 4.51026 4.55160 4.66290 4.70172 4.74833 4.76816 4.78620 4.82046 4.91613 4.98001 5.02233 5.05480 5.16566 5.19816 5.25638 5.28822 5.33107 5.38866 5.54652 5.61165 5.64409 5.70046 5.71938 5.80677 5.89275 6.14683 6.18237 6.42847 6.51599 7.10360 7.15794 8.66468 Molecular weight = 363.18amu Principal moments of inertia in cm(-1) A = 0.009055 B = 0.003515 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3091.597533 B = 7964.683761 C = 9476.626206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.103 4.103 3 C -0.129 4.129 4 C -0.126 4.126 5 C -0.095 4.095 6 C -0.083 4.083 7 C 0.106 3.894 8 H 0.065 0.935 9 C -0.102 4.102 10 C -0.119 4.119 11 C 0.036 3.964 12 N -0.469 5.469 13 C 0.447 3.553 14 N -0.540 5.540 15 C 0.344 3.656 16 N -0.563 5.563 17 C 0.321 3.679 18 C -0.320 4.320 19 C 0.090 3.910 20 N -0.261 5.261 21 N -0.362 5.362 22 C 0.284 3.716 23 C -0.554 4.554 24 H 0.044 0.956 25 C 0.023 3.977 26 N -0.917 5.917 27 Si 0.974 3.026 28 H -0.275 1.275 29 H -0.265 1.265 30 H -0.269 1.269 31 C -0.134 4.134 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.132 0.868 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.048 0.952 43 H 0.096 0.904 44 H 0.236 0.764 45 H 0.231 0.769 46 H 0.036 0.964 47 H 0.035 0.965 48 H 0.275 0.725 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.884 11.703 -22.467 26.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.103 4.103 3 C -0.147 4.147 4 C -0.144 4.144 5 C -0.113 4.113 6 C -0.084 4.084 7 C -0.001 4.001 8 H 0.083 0.917 9 C -0.140 4.140 10 C -0.157 4.157 11 C -0.090 4.090 12 N -0.191 5.191 13 C 0.196 3.804 14 N -0.258 5.258 15 C 0.052 3.948 16 N -0.285 5.285 17 C 0.073 3.927 18 C -0.337 4.337 19 C -0.106 4.106 20 N -0.076 5.076 21 N -0.149 5.149 22 C 0.165 3.835 23 C -0.592 4.592 24 H 0.062 0.938 25 C -0.178 4.178 26 N -0.555 5.555 27 Si 0.797 3.203 28 H -0.200 1.200 29 H -0.190 1.190 30 H -0.194 1.194 31 C -0.152 4.152 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.155 0.845 36 H 0.157 0.843 37 H 0.150 0.850 38 H 0.103 0.897 39 H 0.116 0.884 40 H 0.109 0.891 41 H 0.118 0.882 42 H 0.067 0.933 43 H 0.114 0.886 44 H 0.252 0.748 45 H 0.247 0.753 46 H 0.054 0.946 47 H 0.052 0.948 48 H 0.084 0.916 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.709 11.521 -21.177 24.775 hybrid contribution -1.091 -0.689 0.727 1.481 sum 4.618 10.831 -20.450 23.598 Atomic orbital electron populations 1.20806 0.90202 1.03682 1.02246 1.20122 0.97030 0.93154 0.99965 1.21307 0.94680 0.97875 1.00875 1.21435 0.94403 0.98734 0.99823 1.21091 1.00715 0.91420 0.98089 1.19654 0.92957 0.94875 1.00895 1.21975 0.88679 0.94324 0.95090 0.91726 1.22546 0.98050 1.00830 0.92586 1.22452 0.98836 1.00674 0.93701 1.23165 0.97451 0.91182 0.97220 1.61497 1.13273 1.47400 0.96968 1.19854 0.84523 0.84365 0.91645 1.68230 1.23918 1.30220 1.03466 1.25519 0.87201 0.92407 0.89671 1.67530 1.17977 1.01909 1.41040 1.19506 0.93397 0.88649 0.91118 1.21020 1.15762 1.01802 0.95150 1.24245 0.96167 0.89722 1.00451 1.76902 1.19478 1.22003 0.89214 1.49222 1.46777 1.11382 1.07519 1.19206 0.95248 0.94544 0.74491 1.21367 0.97635 1.34763 1.05465 0.93768 1.25757 1.03151 0.94177 0.94715 1.70004 1.39224 1.35969 1.10272 0.85282 0.78193 0.78576 0.78261 1.20011 1.19018 1.19369 1.21033 0.93888 0.98120 1.02177 0.91966 0.89881 0.91156 0.84497 0.84256 0.85000 0.89704 0.88425 0.89073 0.88163 0.93317 0.88605 0.74775 0.75268 0.94639 0.94753 0.91575 0.86639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.09 10.01 71.24 0.71 -1.37 16 2 C -0.10 -2.34 5.88 -19.87 -0.12 -2.46 16 3 C -0.13 -2.70 9.70 22.27 0.22 -2.49 16 4 C -0.13 -2.63 10.05 22.27 0.22 -2.41 16 5 C -0.09 -2.18 9.32 22.27 0.21 -1.98 16 6 C -0.08 -1.99 4.85 -19.86 -0.10 -2.09 16 7 C 0.11 2.22 2.30 44.52 0.10 2.33 16 8 H 0.06 1.51 5.22 -2.39 -0.01 1.49 16 9 C -0.10 -1.33 6.49 31.80 0.21 -1.13 16 10 C -0.12 -1.26 6.93 31.47 0.22 -1.04 16 11 C 0.04 0.63 6.30 86.44 0.54 1.18 16 12 N -0.47 -10.98 4.18 -668.77 -2.80 -13.78 16 13 C 0.45 14.00 5.71 133.64 0.76 14.77 16 14 N -0.54 -17.78 10.45 -197.02 -2.06 -19.84 16 15 C 0.34 11.76 12.24 180.87 2.21 13.97 16 16 N -0.56 -24.43 10.47 -198.10 -2.07 -26.51 16 17 C 0.32 14.53 8.04 134.14 1.08 15.61 16 18 C -0.32 -11.58 4.95 -21.29 -0.11 -11.69 16 19 C 0.09 2.96 9.28 85.65 0.80 3.75 16 20 N -0.26 -11.21 12.45 -56.45 -0.70 -11.91 16 21 N -0.36 -17.88 3.63 -348.94 -1.27 -19.15 16 22 C 0.28 15.90 6.19 85.63 0.53 16.43 16 23 C -0.55 -32.73 9.39 25.60 0.24 -32.49 16 24 H 0.04 2.70 7.81 -2.91 -0.02 2.68 16 25 C 0.02 1.32 5.46 84.66 0.46 1.79 16 26 N -0.92 -53.80 13.29 21.45 0.28 -53.51 16 27 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 28 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 29 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 30 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 31 C -0.13 -3.31 9.35 22.27 0.21 -3.11 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 1.19 8.09 -2.39 -0.02 1.17 16 34 H 0.07 1.20 8.09 -2.39 -0.02 1.18 16 35 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16 36 H 0.14 2.25 8.06 -2.91 -0.02 2.22 16 37 H 0.13 2.98 7.61 -2.91 -0.02 2.96 16 38 H 0.08 1.10 8.01 -2.39 -0.02 1.08 16 39 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 41 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 42 H 0.05 0.98 5.90 -2.39 -0.01 0.97 16 43 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 44 H 0.24 5.86 8.06 -2.91 -0.02 5.84 16 45 H 0.23 5.03 7.16 -2.91 -0.02 5.01 16 46 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 47 H 0.03 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.28 14.93 8.31 -92.71 -0.77 14.16 16 49 H 0.12 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -74.14 403.18 2.79 -71.36 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.97 Total: 19.01 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: 8.41 Total: 7.56 kcal Atomic # 7 Polarization: -136.07 SS G_CDS: -8.62 Total: -144.69 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -74.14 2.79 -71.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199742.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.196 kcal (2) G-P(sol) polarization free energy of solvation -74.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds