Wall clock time and date at job start Tue Mar 31 2020 06:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30838 * 1 3 3 Si 1.86806 * 120.00072 * 2 1 4 4 H 1.48501 * 109.47097 * 270.00822 * 3 2 1 5 5 H 1.48507 * 109.46864 * 30.00071 * 3 2 1 6 6 H 1.48498 * 109.47286 * 149.99985 * 3 2 1 7 7 C 1.39942 * 120.00413 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00512 * 179.97438 * 7 2 1 9 9 C 1.40900 * 119.99894 * 359.97438 * 7 2 1 10 10 N 1.33011 * 126.48329 * 0.02562 * 9 7 2 11 11 N 1.39884 * 109.35081 * 180.02562 * 10 9 7 12 12 C 1.39711 * 125.21893 * 180.02562 * 11 10 9 13 13 C 1.38993 * 120.07761 * 144.71819 * 12 11 10 14 14 C 1.38075 * 119.91553 * 179.74715 * 13 12 11 15 15 C 1.38321 * 120.07756 * 0.55576 * 14 13 12 16 16 C 1.38306 * 120.16489 * 359.70101 * 15 14 13 17 17 C 1.38077 * 120.08181 * 0.02562 * 16 15 14 18 18 C 1.36825 * 109.56193 * 0.02562 * 11 10 9 19 19 N 1.34413 * 133.55279 * 180.02562 * 18 11 10 20 20 C 1.29971 * 122.45537 * 179.67662 * 19 18 11 21 21 N 1.35836 * 123.05768 * 0.60650 * 20 19 18 22 22 C 1.46496 * 120.20020 * 179.68158 * 21 20 19 23 23 C 1.52999 * 109.47487 * 59.73075 * 22 21 20 24 24 C 1.52997 * 109.47317 * 179.97438 * 23 22 21 25 25 C 1.53000 * 109.47060 * 59.99960 * 24 23 22 26 26 C 1.53002 * 109.47233 * 299.99657 * 25 24 23 27 27 C 1.52997 * 109.46817 * 60.00194 * 26 25 24 28 28 C 1.38452 * 119.59648 * 359.41156 * 21 20 19 29 29 N 1.31188 * 121.41999 * 180.24960 * 28 21 20 30 30 C 1.39556 * 107.15868 * 0.02562 * 18 11 10 31 31 H 0.96998 * 120.00351 * 359.97438 * 1 2 3 32 32 H 1.08000 * 120.04592 * 0.02562 * 13 12 11 33 33 H 1.08001 * 119.96285 * 180.30199 * 14 13 12 34 34 H 1.08000 * 119.91633 * 179.72043 * 15 14 13 35 35 H 1.07995 * 119.96568 * 180.02562 * 16 15 14 36 36 H 1.08003 * 120.04159 * 180.02562 * 17 16 15 37 37 H 1.08004 * 118.47001 * 180.29165 * 20 19 18 38 38 H 1.09002 * 109.47021 * 179.72739 * 22 21 20 39 39 H 1.08996 * 109.46929 * 59.99046 * 23 22 21 40 40 H 1.09002 * 109.46716 * 299.99851 * 23 22 21 41 41 H 1.09002 * 109.47153 * 299.99641 * 24 23 22 42 42 H 1.09001 * 109.46832 * 179.97438 * 24 23 22 43 43 H 1.08992 * 109.47399 * 59.99823 * 25 24 23 44 44 H 1.09004 * 109.46724 * 180.02562 * 25 24 23 45 45 H 1.08993 * 109.47662 * 180.02562 * 26 25 24 46 46 H 1.09002 * 109.47075 * 300.00932 * 26 25 24 47 47 H 1.09002 * 109.47153 * 60.00231 * 27 26 25 48 48 H 1.09001 * 109.47289 * 180.02562 * 27 26 25 49 49 H 0.97003 * 119.99781 * 180.02562 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.4898 2.0466 -1.4001 5 1 1.4398 2.6527 0.7001 6 1 3.5400 1.4402 0.7000 7 6 2.0082 -1.2119 -0.0005 8 1 3.0881 -1.2119 -0.0010 9 6 1.3037 -2.4321 -0.0005 10 7 -0.0179 -2.5824 -0.0005 11 7 -0.3293 -3.9461 0.0000 12 6 -1.6214 -4.4775 -0.0003 13 6 -1.8919 -5.6509 -0.6945 14 6 -3.1689 -6.1759 -0.6883 15 6 -4.1809 -5.5294 -0.0018 16 6 -3.9166 -4.3588 0.6857 17 6 -2.6408 -3.8308 0.6886 18 6 0.8256 -4.6798 0.0010 19 7 1.0850 -5.9987 0.0014 20 6 2.2957 -6.4714 -0.0038 21 7 3.4000 -5.6805 0.0019 22 6 4.7363 -6.2807 0.0025 23 6 4.9066 -7.1479 -1.2465 24 6 6.3024 -7.7742 -1.2461 25 6 6.4723 -8.6407 0.0034 26 6 6.3022 -7.7736 1.2524 27 6 4.9063 -7.1472 1.2521 28 6 3.2549 -4.3036 0.0016 29 7 4.2966 -3.5061 0.0021 30 6 1.8882 -3.7750 0.0016 31 1 -0.4850 0.8400 0.0004 32 1 -1.1032 -6.1538 -1.2344 33 1 -3.3788 -7.0902 -1.2234 34 1 -5.1798 -5.9400 -0.0024 35 1 -4.7090 -3.8569 1.2209 36 1 -2.4350 -2.9169 1.2260 37 1 2.4299 -7.5431 -0.0079 38 1 5.4888 -5.4921 0.0026 39 1 4.7858 -6.5305 -2.1366 40 1 4.1541 -7.9365 -1.2465 41 1 7.0547 -6.9854 -1.2463 42 1 6.4235 -8.3924 -2.1357 43 1 5.7202 -9.4295 0.0036 44 1 7.4670 -9.0866 0.0038 45 1 6.4237 -8.3907 2.1425 46 1 7.0544 -6.9846 1.2522 47 1 4.1541 -7.9361 1.2522 48 1 4.7852 -6.5290 2.1416 49 1 4.1711 -2.5443 0.0022 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000100283541.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:03 Heat of formation + Delta-G solvation = 133.423733 kcal Electronic energy + Delta-G solvation = -32496.376939 eV Core-core repulsion = 28424.235325 eV Total energy + Delta-G solvation = -4072.141614 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.175 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.78881 -39.43687 -38.27823 -37.08820 -34.77097 -33.62151 -32.82152 -31.67658 -30.93414 -30.53170 -29.22152 -28.66303 -27.59760 -25.96300 -24.01137 -23.05136 -22.76734 -22.16658 -21.98742 -20.74411 -20.01761 -19.48294 -18.20653 -17.00528 -16.84744 -16.16869 -15.76249 -15.27886 -15.07775 -14.90542 -14.70417 -14.60803 -14.35521 -14.15386 -14.06550 -13.61192 -13.44377 -13.25523 -13.03131 -12.88710 -12.74705 -12.41236 -12.34443 -11.82488 -11.47623 -11.39422 -11.31084 -11.29055 -11.22807 -10.95274 -10.87240 -10.82153 -10.64247 -10.43838 -10.30210 -10.28906 -9.61975 -9.51730 -9.03730 -8.78894 -8.55004 -8.51676 -8.45243 -7.34575 -6.70963 -6.66869 -4.65326 1.29997 1.80955 2.02816 2.78823 2.89045 3.02640 3.09730 3.13908 3.39856 3.85007 3.94994 4.24573 4.41390 4.51319 4.55556 4.66327 4.72665 4.93177 5.07466 5.13677 5.28655 5.29737 5.30680 5.33080 5.35839 5.37155 5.49574 5.49766 5.58242 5.64512 5.83826 5.86605 5.87997 5.89095 5.94149 5.96770 6.05715 6.11160 6.13270 6.19696 6.23458 6.37561 6.46591 6.52865 6.76261 6.89525 6.92823 7.05951 7.14286 7.27433 7.38128 7.70059 8.03874 8.11712 8.56232 8.63285 8.84007 9.10431 9.53203 10.27875 Molecular weight = 363.18amu Principal moments of inertia in cm(-1) A = 0.006995 B = 0.003979 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4001.872217 B = 7035.981959 C =10602.849759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.072 3.928 3 Si 0.914 3.086 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.430 4.430 8 H 0.088 0.912 9 C 0.256 3.744 10 N -0.311 5.311 11 N -0.335 5.335 12 C 0.192 3.808 13 C -0.133 4.133 14 C -0.105 4.105 15 C -0.149 4.149 16 C -0.107 4.107 17 C -0.119 4.119 18 C 0.296 3.704 19 N -0.541 5.541 20 C 0.385 3.615 21 N -0.518 5.518 22 C 0.137 3.863 23 C -0.129 4.129 24 C -0.115 4.115 25 C -0.121 4.121 26 C -0.115 4.115 27 C -0.129 4.129 28 C 0.472 3.528 29 N -0.792 5.792 30 C -0.327 4.327 31 H 0.279 0.721 32 H 0.128 0.872 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.133 0.867 37 H 0.192 0.808 38 H 0.120 0.880 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.065 0.935 48 H 0.070 0.930 49 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.577 -15.371 0.058 16.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.379 5.379 2 C -0.151 4.151 3 Si 0.738 3.262 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.469 4.469 8 H 0.106 0.894 9 C 0.104 3.896 10 N -0.138 5.138 11 N -0.108 5.108 12 C 0.097 3.903 13 C -0.154 4.154 14 C -0.124 4.124 15 C -0.168 4.168 16 C -0.125 4.125 17 C -0.139 4.139 18 C 0.065 3.935 19 N -0.265 5.265 20 C 0.094 3.906 21 N -0.227 5.227 22 C 0.033 3.967 23 C -0.168 4.168 24 C -0.153 4.153 25 C -0.159 4.159 26 C -0.153 4.153 27 C -0.168 4.168 28 C 0.198 3.802 29 N -0.426 5.426 30 C -0.348 4.348 31 H 0.089 0.911 32 H 0.146 0.854 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.150 0.850 37 H 0.209 0.791 38 H 0.138 0.862 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.088 0.912 49 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 3.542 -15.156 0.072 15.565 hybrid contribution 0.789 1.486 -0.023 1.682 sum 4.331 -13.671 0.048 14.340 Atomic orbital electron populations 1.69884 1.07099 1.28749 1.32175 1.25897 0.94939 1.01068 0.93146 0.86203 0.80334 0.80415 0.79250 1.19381 1.20150 1.18399 1.18642 0.93782 0.87663 1.46829 0.89442 1.20017 0.88890 0.89675 0.91057 1.79172 1.12970 0.82166 1.39474 1.46213 1.00272 1.05545 1.58786 1.17502 0.83146 0.93516 0.96166 1.21059 0.97486 0.96643 1.00224 1.20836 0.92311 0.99599 0.99656 1.21009 0.98877 0.96696 1.00216 1.20934 0.95961 0.96087 0.99548 1.21077 0.92190 1.01077 0.99547 1.18879 0.88095 0.87801 0.98723 1.66800 1.19509 1.14235 1.25973 1.24059 0.80211 0.96666 0.89639 1.45029 1.07220 1.04253 1.66173 1.21416 0.84002 0.96569 0.94706 1.21965 0.97850 0.99018 0.97955 1.21481 0.96586 0.99278 0.97940 1.21580 1.01618 0.98075 0.94597 1.21480 0.96586 0.99279 0.97945 1.21964 0.97838 0.99016 0.97957 1.18975 0.88448 0.82982 0.89790 1.69163 1.30466 1.11185 1.31819 1.21877 0.90905 0.95970 1.26007 0.91051 0.85426 0.86170 0.86533 0.86103 0.84951 0.79125 0.86225 0.91160 0.91601 0.91493 0.91640 0.91868 0.91938 0.91641 0.91501 0.91604 0.91164 0.82203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -20.31 11.95 55.55 0.66 -19.64 16 2 C 0.07 1.86 5.50 -17.34 -0.10 1.77 16 3 Si 0.91 19.02 29.56 -169.99 -5.02 13.99 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.43 -11.55 9.14 -37.94 -0.35 -11.89 16 8 H 0.09 2.22 5.50 -52.49 -0.29 1.93 16 9 C 0.26 7.10 6.92 -83.04 -0.57 6.53 16 10 N -0.31 -8.73 10.46 33.20 0.35 -8.38 16 11 N -0.34 -8.37 3.74 -9.95 -0.04 -8.41 16 12 C 0.19 4.18 6.37 -83.71 -0.53 3.64 16 13 C -0.13 -2.47 9.33 -39.36 -0.37 -2.84 16 14 C -0.11 -1.59 10.04 -39.61 -0.40 -1.99 16 15 C -0.15 -2.15 10.04 -39.53 -0.40 -2.54 16 16 C -0.11 -1.71 10.04 -39.62 -0.40 -2.10 16 17 C -0.12 -2.38 9.73 -39.36 -0.38 -2.76 16 18 C 0.30 6.99 7.48 -155.19 -1.16 5.83 16 19 N -0.54 -10.45 9.32 -13.38 -0.12 -10.58 16 20 C 0.39 5.91 10.27 -90.08 -0.93 4.99 16 21 N -0.52 -8.52 2.63 -108.79 -0.29 -8.80 16 22 C 0.14 1.72 2.55 -67.93 -0.17 1.54 16 23 C -0.13 -1.30 5.17 -26.73 -0.14 -1.44 16 24 C -0.11 -0.93 5.92 -26.73 -0.16 -1.09 16 25 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 26 C -0.11 -0.93 5.92 -26.73 -0.16 -1.09 16 27 C -0.13 -1.31 5.18 -26.73 -0.14 -1.45 16 28 C 0.47 10.14 7.74 -153.57 -1.19 8.95 16 29 N -0.79 -17.09 12.80 32.44 0.42 -16.67 16 30 C -0.33 -8.16 6.49 -102.75 -0.67 -8.83 16 31 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 32 H 0.13 2.37 7.12 -52.49 -0.37 1.99 16 33 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 34 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.13 2.87 8.04 -52.48 -0.42 2.45 16 37 H 0.19 1.92 6.74 -52.48 -0.35 1.57 16 38 H 0.12 1.76 6.92 -51.93 -0.36 1.40 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.57 7.21 -51.93 -0.37 0.19 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.07 0.58 7.25 -51.93 -0.38 0.20 16 48 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.36 8.15 6.08 -40.82 -0.25 7.90 16 LS Contribution 394.00 15.07 5.94 5.94 Total: -1.00 -32.20 394.00 -13.05 -45.24 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -6.58 Total: 13.11 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -8.36 Total: -5.80 kcal Atomic # 7 Polarization: -73.46 SS G_CDS: 0.98 Total: -72.49 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 13.99 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.20 -13.05 -45.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100283541.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.668 kcal (2) G-P(sol) polarization free energy of solvation -32.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds