Wall clock time and date at job start Tue Mar 31 2020 06:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30838 * 1 3 3 Si 1.86806 * 120.00072 * 2 1 4 4 H 1.48501 * 109.47097 * 270.00822 * 3 2 1 5 5 H 1.48507 * 109.46864 * 30.00071 * 3 2 1 6 6 H 1.48498 * 109.47286 * 149.99985 * 3 2 1 7 7 C 1.39942 * 120.00413 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00512 * 179.97438 * 7 2 1 9 9 C 1.40900 * 119.99894 * 359.97438 * 7 2 1 10 10 N 1.33011 * 126.48329 * 0.02562 * 9 7 2 11 11 N 1.39884 * 109.35081 * 180.02562 * 10 9 7 12 12 C 1.39711 * 125.21893 * 180.02562 * 11 10 9 13 13 C 1.38993 * 120.07761 * 144.71819 * 12 11 10 14 14 C 1.38075 * 119.91553 * 179.74715 * 13 12 11 15 15 C 1.38321 * 120.07756 * 0.55576 * 14 13 12 16 16 C 1.38306 * 120.16489 * 359.70101 * 15 14 13 17 17 C 1.38077 * 120.08181 * 0.02562 * 16 15 14 18 18 C 1.36825 * 109.56193 * 0.02562 * 11 10 9 19 19 N 1.34413 * 133.55279 * 180.02562 * 18 11 10 20 20 C 1.29971 * 122.45537 * 179.67662 * 19 18 11 21 21 N 1.35836 * 123.05768 * 0.60650 * 20 19 18 22 22 C 1.46496 * 120.20020 * 179.68158 * 21 20 19 23 23 C 1.52999 * 109.47487 * 59.73075 * 22 21 20 24 24 C 1.52997 * 109.47317 * 179.97438 * 23 22 21 25 25 C 1.53000 * 109.47060 * 59.99960 * 24 23 22 26 26 C 1.53002 * 109.47233 * 299.99657 * 25 24 23 27 27 C 1.52997 * 109.46817 * 60.00194 * 26 25 24 28 28 C 1.38452 * 119.59648 * 359.41156 * 21 20 19 29 29 N 1.31188 * 121.41999 * 180.24960 * 28 21 20 30 30 C 1.39556 * 107.15868 * 0.02562 * 18 11 10 31 31 H 0.96998 * 120.00351 * 359.97438 * 1 2 3 32 32 H 1.08000 * 120.04592 * 0.02562 * 13 12 11 33 33 H 1.08001 * 119.96285 * 180.30199 * 14 13 12 34 34 H 1.08000 * 119.91633 * 179.72043 * 15 14 13 35 35 H 1.07995 * 119.96568 * 180.02562 * 16 15 14 36 36 H 1.08003 * 120.04159 * 180.02562 * 17 16 15 37 37 H 1.08004 * 118.47001 * 180.29165 * 20 19 18 38 38 H 1.09002 * 109.47021 * 179.72739 * 22 21 20 39 39 H 1.08996 * 109.46929 * 59.99046 * 23 22 21 40 40 H 1.09002 * 109.46716 * 299.99851 * 23 22 21 41 41 H 1.09002 * 109.47153 * 299.99641 * 24 23 22 42 42 H 1.09001 * 109.46832 * 179.97438 * 24 23 22 43 43 H 1.08992 * 109.47399 * 59.99823 * 25 24 23 44 44 H 1.09004 * 109.46724 * 180.02562 * 25 24 23 45 45 H 1.08993 * 109.47662 * 180.02562 * 26 25 24 46 46 H 1.09002 * 109.47075 * 300.00932 * 26 25 24 47 47 H 1.09002 * 109.47153 * 60.00231 * 27 26 25 48 48 H 1.09001 * 109.47289 * 180.02562 * 27 26 25 49 49 H 0.97003 * 119.99781 * 180.02562 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.4898 2.0466 -1.4001 5 1 1.4398 2.6527 0.7001 6 1 3.5400 1.4402 0.7000 7 6 2.0082 -1.2119 -0.0005 8 1 3.0881 -1.2119 -0.0010 9 6 1.3037 -2.4321 -0.0005 10 7 -0.0179 -2.5824 -0.0005 11 7 -0.3293 -3.9461 0.0000 12 6 -1.6214 -4.4775 -0.0003 13 6 -1.8919 -5.6509 -0.6945 14 6 -3.1689 -6.1759 -0.6883 15 6 -4.1809 -5.5294 -0.0018 16 6 -3.9166 -4.3588 0.6857 17 6 -2.6408 -3.8308 0.6886 18 6 0.8256 -4.6798 0.0010 19 7 1.0850 -5.9987 0.0014 20 6 2.2957 -6.4714 -0.0038 21 7 3.4000 -5.6805 0.0019 22 6 4.7363 -6.2807 0.0025 23 6 4.9066 -7.1479 -1.2465 24 6 6.3024 -7.7742 -1.2461 25 6 6.4723 -8.6407 0.0034 26 6 6.3022 -7.7736 1.2524 27 6 4.9063 -7.1472 1.2521 28 6 3.2549 -4.3036 0.0016 29 7 4.2966 -3.5061 0.0021 30 6 1.8882 -3.7750 0.0016 31 1 -0.4850 0.8400 0.0004 32 1 -1.1032 -6.1538 -1.2344 33 1 -3.3788 -7.0902 -1.2234 34 1 -5.1798 -5.9400 -0.0024 35 1 -4.7090 -3.8569 1.2209 36 1 -2.4350 -2.9169 1.2260 37 1 2.4299 -7.5431 -0.0079 38 1 5.4888 -5.4921 0.0026 39 1 4.7858 -6.5305 -2.1366 40 1 4.1541 -7.9365 -1.2465 41 1 7.0547 -6.9854 -1.2463 42 1 6.4235 -8.3924 -2.1357 43 1 5.7202 -9.4295 0.0036 44 1 7.4670 -9.0866 0.0038 45 1 6.4237 -8.3907 2.1425 46 1 7.0544 -6.9846 1.2522 47 1 4.1541 -7.9361 1.2522 48 1 4.7852 -6.5290 2.1416 49 1 4.1711 -2.5443 0.0022 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000100283541.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:02 Heat of formation + Delta-G solvation = 117.434345 kcal Electronic energy + Delta-G solvation = -32497.070291 eV Core-core repulsion = 28424.235325 eV Total energy + Delta-G solvation = -4072.834966 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.175 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.32290 -40.81420 -39.57020 -38.33122 -36.40343 -35.37131 -34.24841 -33.30818 -31.88479 -31.66843 -30.46808 -30.15852 -29.28480 -27.78925 -25.40876 -24.46933 -23.50617 -23.49258 -23.37129 -22.14915 -21.48282 -20.59368 -19.79117 -18.70407 -18.13878 -17.65828 -17.19668 -16.80569 -16.60707 -16.40460 -16.14114 -15.77679 -15.67978 -15.18360 -14.98414 -14.84720 -14.79995 -14.66156 -14.55616 -14.28373 -13.76434 -13.63034 -13.23259 -13.15287 -13.10909 -12.90012 -12.86456 -12.59623 -12.46330 -12.16728 -12.03350 -12.01306 -11.99495 -11.47310 -11.41013 -11.24403 -11.19212 -11.15176 -10.65842 -10.41682 -10.28418 -10.15245 -9.89906 -8.99570 -8.58928 -8.44071 -6.67126 -0.18420 0.45287 0.63395 1.08029 1.34704 1.36154 1.50121 1.52440 1.76333 2.05306 2.18478 2.68659 2.91469 3.26708 3.36573 3.60718 3.71319 3.83772 3.93084 3.98819 4.07154 4.07978 4.24857 4.26748 4.31391 4.33858 4.46130 4.53410 4.57444 4.57682 4.59897 4.61203 4.73844 4.77317 4.80847 4.96243 5.11132 5.11623 5.13935 5.25540 5.27405 5.28101 5.34079 5.41825 5.44488 5.47903 5.56876 5.60660 5.62596 5.78493 5.96507 6.05322 6.23778 6.47122 6.62393 6.81864 7.07292 7.34341 7.63042 8.38169 Molecular weight = 363.18amu Principal moments of inertia in cm(-1) A = 0.006995 B = 0.003979 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4001.872217 B = 7035.981959 C =10602.849759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.027 3.973 3 Si 0.992 3.008 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.254 1.254 7 C -0.461 4.461 8 H 0.090 0.910 9 C 0.226 3.774 10 N -0.353 5.353 11 N -0.348 5.348 12 C 0.143 3.857 13 C -0.139 4.139 14 C -0.092 4.092 15 C -0.128 4.128 16 C -0.101 4.101 17 C -0.146 4.146 18 C 0.307 3.693 19 N -0.560 5.560 20 C 0.409 3.591 21 N -0.511 5.511 22 C 0.133 3.867 23 C -0.123 4.123 24 C -0.112 4.112 25 C -0.116 4.116 26 C -0.112 4.112 27 C -0.124 4.124 28 C 0.468 3.532 29 N -0.796 5.796 30 C -0.384 4.384 31 H 0.284 0.716 32 H 0.124 0.876 33 H 0.165 0.835 34 H 0.167 0.833 35 H 0.150 0.850 36 H 0.096 0.904 37 H 0.258 0.742 38 H 0.092 0.908 39 H 0.048 0.952 40 H 0.093 0.907 41 H 0.054 0.946 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.054 0.946 47 H 0.092 0.908 48 H 0.047 0.953 49 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.072 -19.692 -0.343 20.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.192 4.192 3 Si 0.812 3.188 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.178 1.178 7 C -0.500 4.500 8 H 0.108 0.892 9 C 0.073 3.927 10 N -0.181 5.181 11 N -0.122 5.122 12 C 0.050 3.950 13 C -0.160 4.160 14 C -0.111 4.111 15 C -0.146 4.146 16 C -0.120 4.120 17 C -0.167 4.167 18 C 0.074 3.926 19 N -0.286 5.286 20 C 0.119 3.881 21 N -0.218 5.218 22 C 0.031 3.969 23 C -0.162 4.162 24 C -0.150 4.150 25 C -0.153 4.153 26 C -0.150 4.150 27 C -0.162 4.162 28 C 0.194 3.806 29 N -0.430 5.430 30 C -0.404 4.404 31 H 0.094 0.906 32 H 0.142 0.858 33 H 0.182 0.818 34 H 0.184 0.816 35 H 0.168 0.832 36 H 0.114 0.886 37 H 0.273 0.727 38 H 0.110 0.890 39 H 0.067 0.933 40 H 0.111 0.889 41 H 0.073 0.927 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.100 0.900 46 H 0.073 0.927 47 H 0.110 0.890 48 H 0.066 0.934 49 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.052 -19.541 -0.328 19.780 hybrid contribution 0.847 2.581 0.101 2.718 sum 3.899 -16.960 -0.227 17.404 Atomic orbital electron populations 1.70014 1.08874 1.29895 1.33323 1.26903 0.95724 1.04592 0.91955 0.85055 0.78894 0.75334 0.79557 1.18585 1.19039 1.17789 1.18991 0.94135 0.88629 1.48250 0.89195 1.20453 0.89526 0.91401 0.91339 1.78969 1.13654 0.84949 1.40493 1.46313 1.01919 1.04889 1.59083 1.18056 0.82395 0.95584 0.98952 1.21176 0.99230 0.95562 0.99998 1.21354 0.90552 1.00491 0.98665 1.21570 1.00819 0.94928 0.97328 1.21292 0.94560 0.96745 0.99356 1.21035 0.94216 1.00633 1.00786 1.19187 0.87313 0.89379 0.96721 1.66941 1.21384 1.11405 1.28825 1.25397 0.78744 0.98772 0.85143 1.45346 1.09385 1.02340 1.64685 1.21717 0.80993 0.96479 0.97723 1.21959 1.00190 0.98812 0.95225 1.21481 0.94672 0.99289 0.99524 1.21568 1.03072 0.97805 0.92840 1.21480 0.94643 0.99295 0.99553 1.21959 1.00189 0.98802 0.95254 1.19102 0.87166 0.85141 0.89230 1.69247 1.30280 1.10471 1.32974 1.22121 0.93163 0.95396 1.29675 0.90620 0.85826 0.81772 0.81587 0.83199 0.88561 0.72671 0.88990 0.93314 0.88895 0.92694 0.89939 0.90105 0.90595 0.90005 0.92694 0.88963 0.93444 0.83656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -46.10 11.95 21.83 0.26 -45.84 16 2 C 0.03 1.48 5.50 85.25 0.47 1.95 16 3 Si 0.99 41.19 29.56 68.60 2.03 43.22 16 4 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 5 H -0.27 -10.46 7.11 99.48 0.71 -9.76 16 6 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 7 C -0.46 -26.89 9.14 23.33 0.21 -26.68 16 8 H 0.09 4.97 5.50 -2.91 -0.02 4.96 16 9 C 0.23 13.69 6.92 41.76 0.29 13.98 16 10 N -0.35 -21.70 10.46 -48.88 -0.51 -22.21 16 11 N -0.35 -18.70 3.74 -185.40 -0.69 -19.39 16 12 C 0.14 6.55 6.37 38.25 0.24 6.80 16 13 C -0.14 -5.09 9.33 22.41 0.21 -4.88 16 14 C -0.09 -2.46 10.04 22.25 0.22 -2.23 16 15 C -0.13 -3.15 10.04 22.31 0.22 -2.92 16 16 C -0.10 -3.10 10.04 22.25 0.22 -2.88 16 17 C -0.15 -6.21 9.73 22.41 0.22 -5.99 16 18 C 0.31 15.28 7.48 133.28 1.00 16.27 16 19 N -0.56 -21.55 9.32 -196.24 -1.83 -23.38 16 20 C 0.41 11.77 10.27 180.16 1.85 13.62 16 21 N -0.51 -16.69 2.63 -498.11 -1.31 -18.00 16 22 C 0.13 3.20 2.55 44.99 0.11 3.31 16 23 C -0.12 -2.18 5.17 30.59 0.16 -2.03 16 24 C -0.11 -1.48 5.92 30.59 0.18 -1.30 16 25 C -0.12 -1.17 5.92 30.60 0.18 -0.99 16 26 C -0.11 -1.51 5.92 30.59 0.18 -1.32 16 27 C -0.12 -2.22 5.18 30.60 0.16 -2.07 16 28 C 0.47 21.21 7.74 135.56 1.05 22.26 16 29 N -0.80 -36.70 12.80 -51.27 -0.66 -37.35 16 30 C -0.38 -20.57 6.49 -18.65 -0.12 -20.69 16 31 H 0.28 14.91 8.30 -92.71 -0.77 14.14 16 32 H 0.12 4.55 7.12 -2.91 -0.02 4.53 16 33 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 34 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 35 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 36 H 0.10 4.66 8.04 -2.91 -0.02 4.64 16 37 H 0.26 3.78 6.74 -2.91 -0.02 3.76 16 38 H 0.09 2.78 6.92 -2.39 -0.02 2.76 16 39 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.09 1.15 7.21 -2.39 -0.02 1.13 16 41 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.09 1.18 7.25 -2.39 -0.02 1.16 16 48 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.34 17.07 6.08 -92.71 -0.56 16.51 16 Total: -1.00 -83.07 394.00 4.78 -78.29 By element: Atomic # 1 Polarization: 40.03 SS G_CDS: 0.43 Total: 40.46 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: 7.06 Total: 4.22 kcal Atomic # 7 Polarization: -161.44 SS G_CDS: -4.74 Total: -166.18 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -83.07 4.78 -78.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100283541.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.723 kcal (2) G-P(sol) polarization free energy of solvation -83.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds