Wall clock time and date at job start Tue Mar 31 2020 06:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99666 * 2 1 4 4 H 1.48497 * 109.47187 * 239.99773 * 3 2 1 5 5 H 1.48501 * 109.47117 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47133 * 119.99784 * 3 2 1 7 7 C 1.37879 * 120.00512 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00237 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99713 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46828 * 179.97438 * 9 7 2 11 11 N 1.46510 * 109.47195 * 180.02562 * 10 9 7 12 12 C 1.34380 * 124.27801 * 89.97154 * 11 10 9 13 13 O 1.21688 * 126.05935 * 0.04098 * 12 11 10 14 14 C 1.47683 * 107.87878 * 180.02562 * 12 11 10 15 15 N 1.31116 * 127.52040 * 179.97438 * 14 12 11 16 16 N 1.40101 * 120.00118 * 0.03081 * 15 14 12 17 17 C 1.34780 * 119.99887 * 180.02562 * 16 15 14 18 18 O 1.21493 * 119.99991 * 359.97438 * 17 16 15 19 19 C 1.48049 * 119.99872 * 179.97438 * 17 16 15 20 20 C 1.39375 * 119.72847 * 179.97438 * 19 17 16 21 21 C 1.38570 * 119.05293 * 179.97438 * 20 19 17 22 22 C 1.38637 * 118.49898 * 359.97438 * 21 20 19 23 23 C 1.38573 * 119.35554 * 0.02562 * 22 21 20 24 24 N 1.31507 * 120.91289 * 359.74030 * 23 22 21 25 25 C 1.48136 * 104.95574 * 0.02562 * 14 12 11 26 26 C 1.39049 * 133.21164 * 179.97438 * 25 14 12 27 27 C 1.38055 * 119.73589 * 180.02562 * 26 25 14 28 28 C 1.38486 * 120.06705 * 359.97438 * 27 26 25 29 29 C 1.38017 * 120.61844 * 0.28402 * 28 27 26 30 30 C 1.39047 * 124.27283 * 270.02032 * 11 10 9 31 31 H 0.96990 * 120.00590 * 0.02562 * 1 2 3 32 32 H 1.09008 * 109.47210 * 60.00182 * 9 7 2 33 33 H 1.08989 * 109.47472 * 299.99686 * 9 7 2 34 34 H 1.08998 * 109.47184 * 60.00651 * 10 9 7 35 35 H 1.09001 * 109.47495 * 300.00033 * 10 9 7 36 36 H 0.96997 * 120.00333 * 359.97438 * 16 15 14 37 37 H 1.07994 * 120.46948 * 359.95889 * 20 19 17 38 38 H 1.08006 * 120.75217 * 179.97438 * 21 20 19 39 39 H 1.07998 * 120.31907 * 179.97438 * 22 21 20 40 40 H 1.08004 * 119.54392 * 179.97438 * 23 22 21 41 41 H 1.08003 * 120.13774 * 359.97438 * 26 25 14 42 42 H 1.08000 * 119.96776 * 180.02562 * 27 26 25 43 43 H 1.08002 * 119.68555 * 179.97438 * 28 27 26 44 44 H 1.08009 * 119.92980 * 179.72172 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6619 0.0005 11 7 1.5131 -4.9308 -0.0001 12 6 1.1347 -5.5857 -1.1108 13 8 1.3399 -5.2308 -2.2566 14 6 0.4259 -6.8126 -0.6945 15 7 -0.1045 -7.7296 -1.4671 16 7 -0.0300 -7.6006 -2.8601 17 6 -0.5757 -8.5430 -3.6543 18 8 -1.1317 -9.5046 -3.1621 19 6 -0.4975 -8.4064 -5.1264 20 6 -1.0632 -9.3845 -5.9423 21 6 -0.9824 -9.2423 -7.3183 22 6 -0.3391 -8.1266 -7.8314 23 6 0.2008 -7.1934 -6.9607 24 7 0.1061 -7.3504 -5.6585 25 6 0.4438 -6.7806 0.7864 26 6 -0.0517 -7.6371 1.7633 27 6 0.1250 -7.3294 3.0975 28 6 0.7939 -6.1722 3.4599 29 6 1.2847 -5.3132 2.4976 30 6 1.1209 -5.6091 1.1486 31 1 -0.4850 0.8399 -0.0004 32 1 0.6249 -2.5571 -0.8898 33 1 0.6243 -2.5568 0.8902 34 1 2.8721 -3.6042 0.8906 35 1 2.8722 -3.6042 -0.8894 36 1 0.4136 -6.8327 -3.2531 37 1 -1.5573 -10.2412 -5.5083 38 1 -1.4109 -9.9840 -7.9763 39 1 -0.2587 -7.9865 -8.8992 40 1 0.7030 -6.3233 -7.3571 41 1 -0.5736 -8.5391 1.4796 42 1 -0.2580 -7.9922 3.8593 43 1 0.9283 -5.9373 4.5055 44 1 1.8007 -4.4115 2.7928 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000100433965.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:19 Heat of formation + Delta-G solvation = 56.550271 kcal Electronic energy + Delta-G solvation = -30769.110649 eV Core-core repulsion = 26460.083795 eV Total energy + Delta-G solvation = -4309.026854 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.132 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.55935 -40.88533 -39.20144 -38.34912 -36.50832 -35.82458 -33.90482 -33.22424 -32.55104 -31.84088 -30.71406 -30.27433 -28.75981 -26.51919 -25.20065 -24.15111 -23.77815 -22.45181 -21.83412 -21.28542 -20.94857 -19.83404 -18.65611 -17.87305 -17.02931 -16.86147 -16.56574 -16.14450 -15.86145 -15.83476 -15.41030 -15.38545 -15.18949 -14.52832 -14.44188 -14.19346 -13.99511 -13.94625 -13.62057 -13.51382 -12.96154 -12.88344 -12.66381 -12.40277 -12.28046 -12.22510 -11.87372 -11.64198 -11.11925 -11.01050 -10.91919 -10.70021 -10.43009 -10.39887 -10.18482 -9.92144 -9.84382 -9.68055 -9.62247 -9.51769 -9.30457 -8.49955 -8.46361 -7.73551 -6.10818 -4.16110 0.03258 0.42141 0.81746 1.34043 1.80781 2.04079 2.46715 2.87537 3.17382 3.27648 3.32713 3.34729 3.52682 3.63428 3.83324 3.95060 4.23118 4.37373 4.41415 4.56744 4.60346 4.63032 4.70683 4.97573 5.00576 5.14426 5.25189 5.27673 5.32376 5.48345 5.54367 5.56065 5.66827 5.76470 5.90171 6.09270 6.14674 6.18586 6.32900 6.48786 6.53060 6.64114 6.72973 6.82954 7.00228 7.15936 7.44983 7.49366 7.60017 7.81698 7.93219 8.01957 8.21664 8.89244 9.48785 11.00353 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.007691 B = 0.002787 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3639.726318 B =10043.341305 C =13249.685592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.012 3.988 10 C 0.111 3.889 11 N -0.530 5.530 12 C 0.534 3.466 13 O -0.491 6.491 14 C 0.088 3.912 15 N -0.140 5.140 16 N -0.557 5.557 17 C 0.593 3.407 18 O -0.494 6.494 19 C 0.079 3.921 20 C -0.105 4.105 21 C -0.082 4.082 22 C -0.145 4.145 23 C 0.103 3.897 24 N -0.453 5.453 25 C -0.113 4.113 26 C -0.035 4.035 27 C -0.156 4.156 28 C -0.064 4.064 29 C -0.135 4.135 30 C 0.184 3.816 31 H 0.263 0.737 32 H 0.022 0.978 33 H 0.023 0.977 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.422 0.578 37 H 0.152 0.848 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.168 0.832 41 H 0.133 0.867 42 H 0.131 0.869 43 H 0.133 0.867 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.230 -19.345 -6.015 20.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.026 4.026 10 C -0.008 4.008 11 N -0.250 5.250 12 C 0.319 3.681 13 O -0.363 6.363 14 C -0.103 4.103 15 N 0.048 4.952 16 N -0.304 5.304 17 C 0.379 3.621 18 O -0.365 6.365 19 C -0.061 4.061 20 C -0.126 4.126 21 C -0.108 4.108 22 C -0.165 4.165 23 C -0.056 4.056 24 N -0.165 5.165 25 C -0.119 4.119 26 C -0.055 4.055 27 C -0.175 4.175 28 C -0.084 4.084 29 C -0.156 4.156 30 C 0.083 3.917 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.042 0.958 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.266 0.734 37 H 0.169 0.831 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.185 0.815 41 H 0.151 0.849 42 H 0.149 0.851 43 H 0.151 0.849 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.716 -19.788 -6.050 20.704 hybrid contribution 0.636 1.643 -1.007 2.029 sum -0.079 -18.145 -7.057 19.469 Atomic orbital electron populations 1.69955 1.06143 1.27062 1.49632 1.24996 0.94853 0.99382 0.94861 0.86583 0.79534 0.82736 0.78728 1.20101 1.21195 1.20066 1.20953 0.93005 0.90310 1.52270 0.92305 1.19428 0.94196 0.90691 0.98278 1.22281 0.95641 0.79920 1.02919 1.45891 1.51970 1.22896 1.04198 1.19030 0.79789 0.84221 0.85069 1.90820 1.55558 1.71324 1.18581 1.23409 0.98861 0.93303 0.94703 1.75241 1.10690 1.19506 0.89770 1.46867 1.55655 1.26632 1.01277 1.17742 0.77993 0.81667 0.84742 1.90792 1.40885 1.29946 1.74878 1.20821 0.99220 0.93077 0.92957 1.22117 0.97447 0.99294 0.93778 1.21654 0.96738 0.97645 0.94751 1.22479 0.97291 0.94756 1.02013 1.22914 0.96209 0.98815 0.87702 1.67637 1.13185 1.20165 1.15505 1.18262 1.07305 0.98069 0.88224 1.20608 0.95819 0.97714 0.91353 1.20979 1.02619 0.98548 0.95333 1.21041 0.95055 0.93127 0.99191 1.20420 1.04584 1.01876 0.88742 1.18375 0.94218 0.90316 0.88743 0.92690 0.95943 0.95834 0.90138 0.89875 0.73364 0.83065 0.83688 0.83840 0.81508 0.84879 0.85147 0.84932 0.84478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.53 -14.35 9.11 -34.44 -0.31 -14.66 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.01 0.30 5.30 -27.89 -0.15 0.15 16 10 C 0.11 2.25 5.72 -4.04 -0.02 2.23 16 11 N -0.53 -9.97 2.73 -114.48 -0.31 -10.29 16 12 C 0.53 10.44 7.94 -12.58 -0.10 10.34 16 13 O -0.49 -10.52 15.47 5.20 0.08 -10.44 16 14 C 0.09 1.53 7.56 -80.25 -0.61 0.93 16 15 N -0.14 -2.48 11.19 34.75 0.39 -2.09 16 16 N -0.56 -9.58 6.24 30.57 0.19 -9.38 16 17 C 0.59 9.42 7.92 -12.23 -0.10 9.32 16 18 O -0.49 -8.59 16.66 5.37 0.09 -8.50 16 19 C 0.08 1.02 6.75 -83.02 -0.56 0.46 16 20 C -0.11 -1.02 9.63 -39.04 -0.38 -1.40 16 21 C -0.08 -0.56 10.17 -39.31 -0.40 -0.96 16 22 C -0.15 -0.95 10.12 -39.31 -0.40 -1.35 16 23 C 0.10 0.95 11.18 -17.57 -0.20 0.75 16 24 N -0.45 -5.85 9.54 -9.81 -0.09 -5.95 16 25 C -0.11 -1.75 6.34 -104.84 -0.67 -2.41 16 26 C -0.03 -0.43 10.09 -39.35 -0.40 -0.82 16 27 C -0.16 -1.60 10.05 -39.56 -0.40 -2.00 16 28 C -0.06 -0.69 10.01 -39.57 -0.40 -1.09 16 29 C -0.14 -1.84 9.78 -39.35 -0.39 -2.23 16 30 C 0.18 2.98 6.73 -83.59 -0.56 2.42 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.02 0.64 8.14 -51.92 -0.42 0.21 16 33 H 0.02 0.62 8.14 -51.94 -0.42 0.20 16 34 H 0.08 1.44 7.75 -51.93 -0.40 1.03 16 35 H 0.08 1.71 7.96 -51.93 -0.41 1.29 16 36 H 0.42 7.45 5.60 -182.60 -1.02 6.43 16 37 H 0.15 1.32 7.64 -52.49 -0.40 0.92 16 38 H 0.15 0.52 8.06 -52.48 -0.42 0.09 16 39 H 0.14 0.48 8.06 -52.49 -0.42 0.05 16 40 H 0.17 1.12 8.06 -52.48 -0.42 0.70 16 41 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 42 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 44 H 0.14 1.80 7.81 -52.48 -0.41 1.39 16 LS Contribution 393.28 15.07 5.93 5.93 Total: -1.00 -34.82 393.28 -9.71 -44.53 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -5.57 Total: 4.43 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -6.12 Total: 1.31 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: 0.91 Total: -53.35 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: 0.17 Total: -18.95 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.82 -9.71 -44.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100433965.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.077 kcal (2) G-P(sol) polarization free energy of solvation -34.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds