Wall clock time and date at job start Tue Mar 31 2020 06:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.50198 * 2 1 4 4 C 1.50961 * 110.44941 * 237.48096 * 2 1 3 5 5 C 1.37730 * 135.67072 * 61.27355 * 4 2 1 6 6 C 1.38661 * 119.67928 * 180.08801 * 5 4 2 7 7 S 1.76199 * 119.46849 * 180.02562 * 6 5 4 8 8 O 1.42100 * 106.40198 * 203.54216 * 7 6 5 9 9 O 1.42096 * 106.39959 * 336.46281 * 7 6 5 10 10 N 1.65599 * 107.21658 * 90.00272 * 7 6 5 11 11 C 1.46502 * 119.99727 * 269.99791 * 10 7 6 12 12 C 1.46499 * 120.00337 * 89.99803 * 10 7 6 13 13 C 1.50701 * 109.46892 * 94.99985 * 12 10 7 14 14 H 1.08001 * 120.00365 * 359.97438 * 13 12 10 15 15 C 1.37877 * 120.00124 * 180.02562 * 13 12 10 16 16 N 1.31508 * 120.00383 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99895 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47505 * 89.99600 * 17 15 13 19 19 H 1.48500 * 109.47084 * 210.00062 * 17 15 13 20 20 H 1.48509 * 109.46996 * 329.99710 * 17 15 13 21 21 C 1.38833 * 121.06628 * 0.35104 * 6 5 4 22 22 C 1.37149 * 119.43204 * 359.41919 * 21 6 5 23 23 C 1.37563 * 105.31068 * 241.32430 * 4 2 1 24 24 N 1.40405 * 112.03825 * 359.74721 * 23 4 2 25 25 C 1.47314 * 119.33756 * 180.51861 * 24 23 4 26 26 C 1.53288 * 108.33773 * 27.18502 * 25 24 23 27 27 C 1.50565 * 124.77316 * 180.10434 * 22 21 6 28 28 C 1.33611 * 110.74287 * 0.38773 * 24 23 4 29 29 O 1.21293 * 126.23290 * 179.65976 * 28 24 23 30 30 H 1.09006 * 109.47359 * 182.52318 * 1 2 3 31 31 H 1.09007 * 109.46857 * 302.51619 * 1 2 3 32 32 H 1.08997 * 109.47476 * 62.51645 * 1 2 3 33 33 H 1.08009 * 120.16407 * 0.11077 * 5 4 2 34 34 H 1.09004 * 109.46955 * 90.00036 * 11 10 7 35 35 H 1.09003 * 109.47115 * 210.00083 * 11 10 7 36 36 H 1.08994 * 109.47486 * 330.00188 * 11 10 7 37 37 H 1.08997 * 109.47561 * 214.99701 * 12 10 7 38 38 H 1.09003 * 109.47156 * 335.00543 * 12 10 7 39 39 H 0.96998 * 120.00155 * 179.97438 * 16 15 13 40 40 H 1.07994 * 120.28319 * 179.69108 * 21 6 5 41 41 H 1.08997 * 109.69281 * 146.89643 * 25 24 23 42 42 H 1.08997 * 109.68842 * 267.43596 * 25 24 23 43 43 H 1.09008 * 108.96773 * 64.06932 * 26 25 24 44 44 H 1.09000 * 108.97101 * 182.75094 * 26 25 24 45 45 H 1.09007 * 109.43985 * 31.37525 * 27 22 21 46 46 H 1.08997 * 109.44162 * 271.49774 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9117 1.0209 0.0000 4 6 2.0574 -0.7604 -1.1927 5 6 1.9682 -0.6319 -2.5611 6 6 2.6044 -1.5523 -3.3800 7 16 2.4872 -1.3822 -5.1299 8 8 2.7182 -2.6741 -5.6750 9 8 1.3071 -0.6320 -5.3819 10 7 3.7560 -0.4357 -5.6164 11 6 3.6008 1.0195 -5.6829 12 6 5.0335 -1.0536 -5.9803 13 6 5.0841 -1.2612 -7.4721 14 1 4.2481 -0.9632 -8.0875 15 6 6.1972 -1.8326 -8.0513 16 7 6.2413 -2.0142 -9.3530 17 14 7.6423 -2.3500 -6.9867 18 1 7.4554 -3.7563 -6.5477 19 1 8.8990 -2.2389 -7.7700 20 1 7.7215 -1.4661 -5.7959 21 6 3.3268 -2.6096 -2.8436 22 6 3.4220 -2.7384 -1.4815 23 6 2.7809 -1.8053 -0.6663 24 7 2.7786 -1.7932 0.7377 25 6 3.5164 -2.8373 1.4696 26 6 4.6684 -3.3249 0.5836 27 6 4.1738 -3.8337 -0.7729 28 6 2.0612 -0.7657 1.2009 29 8 1.8687 -0.4936 2.3671 30 1 -0.3634 -1.0267 0.0452 31 1 -0.3633 0.5524 0.8666 32 1 -0.3634 0.4742 -0.9116 33 1 1.4057 0.1821 -2.9942 34 1 3.8779 1.4586 -4.7245 35 1 4.2463 1.4184 -6.4655 36 1 2.5629 1.2644 -5.9082 37 1 5.8522 -0.4014 -5.6764 38 1 5.1286 -2.0153 -5.4763 39 1 7.0245 -2.4159 -9.7604 40 1 3.8132 -3.3221 -3.4933 41 1 3.9152 -2.4241 2.3961 42 1 2.8489 -3.6687 1.6957 43 1 5.3635 -2.5011 0.4211 44 1 5.1919 -4.1323 1.0956 45 1 5.0270 -4.1387 -1.3789 46 1 3.5136 -4.6876 -0.6214 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101079123.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:27 Heat of formation + Delta-G solvation = -62.783001 kcal Electronic energy + Delta-G solvation = -31561.277605 eV Core-core repulsion = 27350.227273 eV Total energy + Delta-G solvation = -4211.050333 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 364.129 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.32880 -38.93221 -36.93106 -36.73471 -35.93078 -35.69516 -35.26894 -32.59069 -32.41767 -31.13899 -29.61090 -28.43108 -26.74939 -25.30455 -25.21873 -23.92114 -22.04075 -21.80521 -21.35280 -19.86589 -18.41131 -17.54049 -17.40865 -17.10263 -16.88644 -16.57279 -16.42118 -15.70785 -15.43008 -14.95995 -14.64474 -14.45893 -14.21291 -14.08357 -13.92573 -13.76859 -13.48544 -13.29509 -13.11595 -12.91008 -12.63459 -12.56211 -12.50157 -12.40398 -12.02748 -11.79353 -11.72477 -11.57629 -11.50820 -11.38003 -11.26678 -11.08595 -10.81277 -10.70206 -10.69981 -10.49154 -10.31221 -10.21485 -9.57835 -9.06581 -8.62670 -8.47177 -8.15391 -6.11063 -4.10765 0.47448 0.91997 1.00074 2.03587 2.25246 3.13464 3.24001 3.28672 3.31242 3.60571 3.68169 3.80650 4.18849 4.27867 4.32831 4.34919 4.38377 4.54863 4.62770 4.72361 4.76975 4.92906 4.96721 5.02142 5.10665 5.17886 5.18961 5.30727 5.36068 5.43578 5.52685 5.55194 5.57324 5.64127 5.71820 5.78885 5.82081 5.90608 5.95299 6.10177 6.16700 6.41431 6.42721 6.65696 6.67085 7.01137 7.29271 7.48852 7.53611 8.45479 8.94220 9.47519 11.02437 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.013242 B = 0.003411 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.906627 B = 8207.218503 C = 9486.544236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.074 4.074 3 H 0.128 0.872 4 C -0.155 4.155 5 C 0.035 3.965 6 C -0.691 4.691 7 S 2.689 3.311 8 O -0.938 6.938 9 O -0.970 6.970 10 N -0.980 5.980 11 C 0.091 3.909 12 C 0.226 3.774 13 C -0.533 4.533 14 H 0.080 0.920 15 C 0.074 3.926 16 N -0.894 5.894 17 Si 0.869 3.131 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.264 1.264 21 C 0.018 3.982 22 C -0.123 4.123 23 C 0.176 3.824 24 N -0.554 5.554 25 C 0.114 3.886 26 C -0.135 4.135 27 C -0.079 4.079 28 C 0.533 3.467 29 O -0.503 6.503 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.147 0.853 34 H 0.041 0.959 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.035 0.965 38 H 0.030 0.970 39 H 0.265 0.735 40 H 0.152 0.848 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.587 1.036 21.428 22.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.095 4.095 3 H 0.145 0.855 4 C -0.159 4.159 5 C 0.015 3.985 6 C -0.776 4.776 7 S 2.777 3.223 8 O -0.928 6.928 9 O -0.960 6.960 10 N -0.820 5.820 11 C -0.055 4.055 12 C 0.103 3.897 13 C -0.572 4.572 14 H 0.098 0.902 15 C -0.129 4.129 16 N -0.532 5.532 17 Si 0.696 3.304 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.189 1.189 21 C -0.002 4.002 22 C -0.127 4.127 23 C 0.079 3.921 24 N -0.276 5.276 25 C -0.006 4.006 26 C -0.173 4.173 27 C -0.116 4.116 28 C 0.322 3.678 29 O -0.377 6.377 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.165 0.835 34 H 0.060 0.940 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.053 0.947 38 H 0.048 0.952 39 H 0.075 0.925 40 H 0.170 0.830 41 H 0.110 0.890 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.110 0.890 45 H 0.109 0.891 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.157 0.720 21.662 22.532 hybrid contribution 1.333 -0.311 1.169 1.800 sum -4.824 0.409 22.831 23.338 Atomic orbital electron populations 1.21601 0.90244 1.03206 1.03743 1.20708 0.98944 1.00588 0.89258 0.85484 1.19416 1.03837 0.98451 0.94183 1.19999 0.92396 0.95700 0.90385 1.31540 1.12467 1.05005 1.28589 1.02175 0.73106 0.73847 0.73215 1.93612 1.85003 1.38770 1.75420 1.93507 1.45766 1.72512 1.84226 1.57087 1.29345 1.15943 1.79642 1.21449 1.02859 0.79649 1.01511 1.19495 0.80285 0.92693 0.97277 1.21369 1.04205 1.41228 0.90376 0.90241 1.24855 0.98159 0.94992 0.94856 1.69886 1.29817 1.43787 1.09684 0.86967 0.82581 0.79889 0.80995 1.19707 1.20935 1.18909 1.20467 0.91879 0.94106 0.93713 1.19277 1.02550 0.98007 0.92825 1.18629 0.95079 0.95332 0.83068 1.46495 1.48012 1.27630 1.05504 1.21951 0.93624 0.89547 0.95484 1.21831 0.97289 1.02455 0.95676 1.20438 1.00227 0.95939 0.95031 1.20672 0.77217 0.79827 0.90050 1.90766 1.58937 1.69724 1.18267 0.92034 0.90927 0.90265 0.83530 0.94030 0.89817 0.90961 0.94681 0.95230 0.92473 0.82995 0.88990 0.90298 0.90728 0.89000 0.89081 0.89860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.08 9.29 37.16 0.35 -0.74 16 2 C -0.07 -0.73 3.58 -92.15 -0.33 -1.06 16 3 H 0.13 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.16 -1.79 5.81 -104.93 -0.61 -2.40 16 5 C 0.03 0.44 9.51 -39.61 -0.38 0.06 16 6 C -0.69 -10.08 6.00 -39.21 -0.24 -10.31 16 7 S 2.69 49.31 5.64 -107.50 -0.61 48.70 16 8 O -0.94 -20.53 16.21 -57.17 -0.93 -21.46 16 9 O -0.97 -18.39 15.84 -57.17 -0.91 -19.30 16 10 N -0.98 -18.66 3.17 -123.05 -0.39 -19.05 16 11 C 0.09 1.42 10.68 59.85 0.64 2.06 16 12 C 0.23 5.02 4.15 -5.19 -0.02 5.00 16 13 C -0.53 -14.59 9.94 -34.44 -0.34 -14.93 16 14 H 0.08 2.40 8.06 -52.49 -0.42 1.97 16 15 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 16 N -0.89 -26.76 13.96 55.43 0.77 -25.99 16 17 Si 0.87 20.18 27.47 -169.99 -4.67 15.51 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.26 -5.66 6.54 56.52 0.37 -5.29 16 21 C 0.02 0.24 9.38 -39.76 -0.37 -0.13 16 22 C -0.12 -1.44 5.77 -104.61 -0.60 -2.04 16 23 C 0.18 2.07 6.24 -83.70 -0.52 1.54 16 24 N -0.55 -6.02 3.16 -112.52 -0.36 -6.38 16 25 C 0.11 0.92 7.07 -3.45 -0.02 0.90 16 26 C -0.13 -0.94 5.78 -26.53 -0.15 -1.10 16 27 C -0.08 -0.67 6.06 -27.90 -0.17 -0.84 16 28 C 0.53 6.30 7.71 -10.86 -0.08 6.21 16 29 O -0.50 -7.17 17.99 5.55 0.10 -7.07 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.15 1.58 7.59 -52.48 -0.40 1.18 16 34 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 36 H 0.07 1.05 7.02 -51.93 -0.36 0.68 16 37 H 0.04 0.74 7.17 -51.93 -0.37 0.37 16 38 H 0.03 0.64 7.04 -51.93 -0.37 0.28 16 39 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.15 2.01 7.59 -52.49 -0.40 1.62 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 44 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 387.04 15.07 5.83 5.83 Total: -1.00 -35.38 387.04 -10.66 -46.05 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -6.56 Total: -1.05 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -2.96 Total: -15.79 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 0.03 Total: -51.42 kcal Atomic # 8 Polarization: -46.10 SS G_CDS: -1.73 Total: -47.83 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.67 Total: 15.51 kcal Atomic # 16 Polarization: 49.31 SS G_CDS: -0.61 Total: 48.70 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.38 -10.66 -46.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101079123.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.736 kcal (2) G-P(sol) polarization free energy of solvation -35.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds