Wall clock time and date at job start Tue Mar 31 2020 06:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.50198 * 2 1 4 4 C 1.50961 * 110.44941 * 237.48096 * 2 1 3 5 5 C 1.37730 * 135.67072 * 61.27355 * 4 2 1 6 6 C 1.38661 * 119.67928 * 180.08801 * 5 4 2 7 7 S 1.76199 * 119.46849 * 180.02562 * 6 5 4 8 8 O 1.42100 * 106.40198 * 203.54216 * 7 6 5 9 9 O 1.42096 * 106.39959 * 336.46281 * 7 6 5 10 10 N 1.65599 * 107.21658 * 90.00272 * 7 6 5 11 11 C 1.46502 * 119.99727 * 269.99791 * 10 7 6 12 12 C 1.46499 * 120.00337 * 89.99803 * 10 7 6 13 13 C 1.50701 * 109.46892 * 94.99985 * 12 10 7 14 14 H 1.08001 * 120.00365 * 359.97438 * 13 12 10 15 15 C 1.37877 * 120.00124 * 180.02562 * 13 12 10 16 16 N 1.31508 * 120.00383 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99895 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47505 * 89.99600 * 17 15 13 19 19 H 1.48500 * 109.47084 * 210.00062 * 17 15 13 20 20 H 1.48509 * 109.46996 * 329.99710 * 17 15 13 21 21 C 1.38833 * 121.06628 * 0.35104 * 6 5 4 22 22 C 1.37149 * 119.43204 * 359.41919 * 21 6 5 23 23 C 1.37563 * 105.31068 * 241.32430 * 4 2 1 24 24 N 1.40405 * 112.03825 * 359.74721 * 23 4 2 25 25 C 1.47314 * 119.33756 * 180.51861 * 24 23 4 26 26 C 1.53288 * 108.33773 * 27.18502 * 25 24 23 27 27 C 1.50565 * 124.77316 * 180.10434 * 22 21 6 28 28 C 1.33611 * 110.74287 * 0.38773 * 24 23 4 29 29 O 1.21293 * 126.23290 * 179.65976 * 28 24 23 30 30 H 1.09006 * 109.47359 * 182.52318 * 1 2 3 31 31 H 1.09007 * 109.46857 * 302.51619 * 1 2 3 32 32 H 1.08997 * 109.47476 * 62.51645 * 1 2 3 33 33 H 1.08009 * 120.16407 * 0.11077 * 5 4 2 34 34 H 1.09004 * 109.46955 * 90.00036 * 11 10 7 35 35 H 1.09003 * 109.47115 * 210.00083 * 11 10 7 36 36 H 1.08994 * 109.47486 * 330.00188 * 11 10 7 37 37 H 1.08997 * 109.47561 * 214.99701 * 12 10 7 38 38 H 1.09003 * 109.47156 * 335.00543 * 12 10 7 39 39 H 0.96998 * 120.00155 * 179.97438 * 16 15 13 40 40 H 1.07994 * 120.28319 * 179.69108 * 21 6 5 41 41 H 1.08997 * 109.69281 * 146.89643 * 25 24 23 42 42 H 1.08997 * 109.68842 * 267.43596 * 25 24 23 43 43 H 1.09008 * 108.96773 * 64.06932 * 26 25 24 44 44 H 1.09000 * 108.97101 * 182.75094 * 26 25 24 45 45 H 1.09007 * 109.43985 * 31.37525 * 27 22 21 46 46 H 1.08997 * 109.44162 * 271.49774 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9117 1.0209 0.0000 4 6 2.0574 -0.7604 -1.1927 5 6 1.9682 -0.6319 -2.5611 6 6 2.6044 -1.5523 -3.3800 7 16 2.4872 -1.3822 -5.1299 8 8 2.7182 -2.6741 -5.6750 9 8 1.3071 -0.6320 -5.3819 10 7 3.7560 -0.4357 -5.6164 11 6 3.6008 1.0195 -5.6829 12 6 5.0335 -1.0536 -5.9803 13 6 5.0841 -1.2612 -7.4721 14 1 4.2481 -0.9632 -8.0875 15 6 6.1972 -1.8326 -8.0513 16 7 6.2413 -2.0142 -9.3530 17 14 7.6423 -2.3500 -6.9867 18 1 7.4554 -3.7563 -6.5477 19 1 8.8990 -2.2389 -7.7700 20 1 7.7215 -1.4661 -5.7959 21 6 3.3268 -2.6096 -2.8436 22 6 3.4220 -2.7384 -1.4815 23 6 2.7809 -1.8053 -0.6663 24 7 2.7786 -1.7932 0.7377 25 6 3.5164 -2.8373 1.4696 26 6 4.6684 -3.3249 0.5836 27 6 4.1738 -3.8337 -0.7729 28 6 2.0612 -0.7657 1.2009 29 8 1.8687 -0.4936 2.3671 30 1 -0.3634 -1.0267 0.0452 31 1 -0.3633 0.5524 0.8666 32 1 -0.3634 0.4742 -0.9116 33 1 1.4057 0.1821 -2.9942 34 1 3.8779 1.4586 -4.7245 35 1 4.2463 1.4184 -6.4655 36 1 2.5629 1.2644 -5.9082 37 1 5.8522 -0.4014 -5.6764 38 1 5.1286 -2.0153 -5.4763 39 1 7.0245 -2.4159 -9.7604 40 1 3.8132 -3.3221 -3.4933 41 1 3.9152 -2.4241 2.3961 42 1 2.8489 -3.6687 1.6957 43 1 5.3635 -2.5011 0.4211 44 1 5.1919 -4.1323 1.0956 45 1 5.0270 -4.1387 -1.3789 46 1 3.5136 -4.6876 -0.6214 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000101079123.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:25 Heat of formation + Delta-G solvation = -87.043567 kcal Electronic energy + Delta-G solvation = -31562.329622 eV Core-core repulsion = 27350.227273 eV Total energy + Delta-G solvation = -4212.102350 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 364.129 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.19012 -39.87174 -38.29920 -37.68190 -37.26953 -36.85415 -36.76562 -34.46643 -33.31998 -31.96779 -30.51654 -30.22894 -27.49670 -26.76619 -26.06322 -24.83410 -23.78106 -22.69234 -22.22773 -20.69392 -19.71811 -19.10433 -18.55995 -18.38082 -18.13950 -17.92344 -17.27373 -17.04906 -16.40159 -16.16433 -15.71950 -15.67177 -15.24220 -15.17759 -14.83155 -14.69374 -14.61236 -14.43022 -14.35661 -14.13911 -13.98800 -13.69791 -13.40231 -13.32188 -13.22157 -13.09243 -13.04044 -12.93407 -12.82272 -12.43852 -12.31499 -12.28377 -12.20352 -12.00280 -11.90021 -11.72788 -11.64851 -11.58225 -11.16222 -10.73818 -9.97229 -9.73252 -9.36663 -8.24432 -6.30368 -0.64908 -0.38456 0.07504 1.13595 1.40839 1.44429 1.47173 1.52998 2.03074 2.38809 2.40219 2.76812 2.90771 2.96454 3.09775 3.40966 3.49399 3.65493 3.74622 3.80070 3.94739 4.03235 4.07574 4.09877 4.18352 4.24264 4.47227 4.54569 4.58729 4.70565 4.72415 4.75413 4.77432 4.78733 4.86515 4.88306 4.92725 4.96395 5.03906 5.11746 5.12649 5.15149 5.25288 5.37888 5.51513 5.52445 5.76929 5.77885 6.34455 6.62638 6.73219 7.32574 8.93124 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.013242 B = 0.003411 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.906627 B = 8207.218503 C = 9486.544236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.071 4.071 3 H 0.149 0.851 4 C -0.151 4.151 5 C 0.034 3.966 6 C -0.690 4.690 7 S 2.694 3.306 8 O -0.985 6.985 9 O -0.985 6.985 10 N -0.991 5.991 11 C 0.083 3.917 12 C 0.232 3.768 13 C -0.543 4.543 14 H 0.029 0.971 15 C 0.007 3.993 16 N -0.950 5.950 17 Si 0.940 3.060 18 H -0.264 1.264 19 H -0.282 1.282 20 H -0.227 1.227 21 C 0.002 3.998 22 C -0.118 4.118 23 C 0.172 3.828 24 N -0.553 5.553 25 C 0.104 3.896 26 C -0.127 4.127 27 C -0.083 4.083 28 C 0.529 3.471 29 O -0.531 6.531 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.163 0.837 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.057 0.943 38 H 0.040 0.960 39 H 0.267 0.733 40 H 0.150 0.850 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.067 0.933 44 H 0.122 0.878 45 H 0.101 0.899 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.550 1.154 25.240 25.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.092 4.092 3 H 0.166 0.834 4 C -0.155 4.155 5 C 0.014 3.986 6 C -0.781 4.781 7 S 2.788 3.212 8 O -0.976 6.976 9 O -0.976 6.976 10 N -0.830 5.830 11 C -0.062 4.062 12 C 0.107 3.893 13 C -0.582 4.582 14 H 0.047 0.953 15 C -0.191 4.191 16 N -0.590 5.590 17 Si 0.762 3.238 18 H -0.189 1.189 19 H -0.208 1.208 20 H -0.150 1.150 21 C -0.018 4.018 22 C -0.122 4.122 23 C 0.075 3.925 24 N -0.274 5.274 25 C -0.015 4.015 26 C -0.165 4.165 27 C -0.120 4.120 28 C 0.319 3.681 29 O -0.408 6.408 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.180 0.820 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.167 0.833 41 H 0.117 0.883 42 H 0.110 0.890 43 H 0.086 0.914 44 H 0.140 0.860 45 H 0.119 0.881 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.139 0.863 25.429 25.957 hybrid contribution 0.875 -0.334 0.039 0.937 sum -4.264 0.529 25.468 25.828 Atomic orbital electron populations 1.21632 0.89077 1.03065 1.04889 1.20811 0.99816 1.01127 0.87405 0.83386 1.19541 1.03346 0.98555 0.94072 1.20120 0.92108 0.95616 0.90719 1.30761 1.15028 1.06946 1.25347 1.01518 0.72570 0.72652 0.74494 1.93548 1.85497 1.40886 1.77657 1.93474 1.46218 1.72491 1.85379 1.57019 1.28117 1.17324 1.80546 1.21690 1.03159 0.77935 1.03423 1.19284 0.82437 0.93922 0.93642 1.21713 1.02674 1.40703 0.93094 0.95257 1.25928 1.01885 0.94957 0.96292 1.70071 1.31139 1.45543 1.12224 0.85836 0.77675 0.80303 0.80024 1.18892 1.20802 1.15005 1.20538 0.92452 0.94076 0.94766 1.19536 1.02009 0.98619 0.92025 1.18817 0.94757 0.95302 0.83638 1.46687 1.47667 1.27863 1.05229 1.22259 0.94150 0.89318 0.95776 1.21824 0.96655 1.03157 0.94822 1.20602 1.00549 0.95269 0.95613 1.20967 0.77000 0.80034 0.90072 1.90754 1.60081 1.70532 1.19423 0.92809 0.90155 0.88823 0.81953 0.89942 0.90981 0.90431 0.92501 0.94246 0.92405 0.83280 0.88337 0.89016 0.91435 0.85982 0.88102 0.88500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.82 9.29 71.98 0.67 -1.15 16 2 C -0.07 -1.19 3.58 -11.79 -0.04 -1.24 16 3 H 0.15 1.90 8.14 -2.39 -0.02 1.88 16 4 C -0.15 -3.08 5.81 -20.06 -0.12 -3.20 16 5 C 0.03 0.78 9.51 22.25 0.21 0.99 16 6 C -0.69 -19.28 6.00 22.51 0.14 -19.15 16 7 S 2.69 99.61 5.64 -56.49 -0.32 99.30 16 8 O -0.99 -44.64 16.21 -128.00 -2.08 -46.72 16 9 O -0.99 -37.67 15.84 -128.00 -2.03 -39.70 16 10 N -0.99 -37.53 3.17 -543.22 -1.72 -39.25 16 11 C 0.08 2.50 10.68 127.77 1.36 3.86 16 12 C 0.23 10.17 4.15 85.63 0.36 10.52 16 13 C -0.54 -30.71 9.94 25.60 0.25 -30.46 16 14 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 15 C 0.01 0.40 5.47 84.66 0.46 0.86 16 16 N -0.95 -59.18 13.96 21.45 0.30 -58.88 16 17 Si 0.94 41.05 27.47 68.60 1.88 42.93 16 18 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 19 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 20 H -0.23 -8.52 6.54 99.48 0.65 -7.87 16 21 C 0.00 0.04 9.38 22.16 0.21 0.25 16 22 C -0.12 -2.47 5.77 -19.86 -0.11 -2.58 16 23 C 0.17 3.60 6.24 37.91 0.24 3.83 16 24 N -0.55 -10.53 3.16 -628.93 -1.99 -12.52 16 25 C 0.10 1.35 7.07 86.32 0.61 1.96 16 26 C -0.13 -1.31 5.78 30.72 0.18 -1.13 16 27 C -0.08 -1.14 6.06 29.84 0.18 -0.96 16 28 C 0.53 11.25 7.71 88.26 0.68 11.93 16 29 O -0.53 -14.19 17.99 -3.07 -0.06 -14.24 16 30 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.16 3.11 7.59 -2.91 -0.02 3.09 16 34 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.07 2.31 8.07 -2.39 -0.02 2.30 16 36 H 0.08 2.22 7.02 -2.39 -0.02 2.21 16 37 H 0.06 2.26 7.17 -2.39 -0.02 2.24 16 38 H 0.04 1.66 7.04 -2.39 -0.02 1.65 16 39 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 40 H 0.15 3.86 7.59 -2.91 -0.02 3.83 16 41 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.07 0.82 8.14 -2.38 -0.02 0.81 16 44 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 46 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -80.59 387.04 0.21 -80.38 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.94 Total: 14.34 kcal Atomic # 6 Polarization: -30.92 SS G_CDS: 5.27 Total: -25.65 kcal Atomic # 7 Polarization: -107.23 SS G_CDS: -3.41 Total: -110.64 kcal Atomic # 8 Polarization: -96.50 SS G_CDS: -4.16 Total: -100.66 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 1.88 Total: 42.93 kcal Atomic # 16 Polarization: 99.61 SS G_CDS: -0.32 Total: 99.30 kcal Total: -80.59 0.21 -80.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101079123.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.663 kcal (2) G-P(sol) polarization free energy of solvation -80.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds