Wall clock time and date at job start Tue Mar 31 2020 05:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.46824 * 2 1 4 4 C 1.36703 * 120.00216 * 271.33590 * 3 2 1 5 5 H 1.07995 * 120.00111 * 137.37323 * 4 3 2 6 6 C 1.38887 * 119.99924 * 317.38118 * 4 3 2 7 7 N 1.31516 * 119.99973 * 351.30426 * 6 4 3 8 8 Si 1.86801 * 119.99982 * 171.29897 * 6 4 3 9 9 H 1.48498 * 109.46846 * 60.00138 * 8 6 4 10 10 H 1.48506 * 109.47037 * 179.97438 * 8 6 4 11 11 H 1.48492 * 109.47243 * 299.99803 * 8 6 4 12 12 C 1.38817 * 120.00369 * 91.34089 * 3 2 1 13 13 C 1.39387 * 119.92738 * 180.02562 * 12 3 2 14 14 C 1.36598 * 120.07101 * 179.74315 * 13 12 3 15 15 C 1.39997 * 119.92428 * 0.25505 * 14 13 12 16 16 N 1.36368 * 120.07194 * 179.97438 * 15 14 13 17 17 N 1.29001 * 120.00247 * 44.91470 * 16 15 14 18 18 C 1.36611 * 119.99851 * 7.20455 * 17 16 15 19 19 C 1.39791 * 120.16504 * 44.34064 * 18 17 16 20 20 C 1.37978 * 119.83156 * 179.97438 * 19 18 17 21 21 Cl 1.73605 * 119.91729 * 179.97438 * 20 19 18 22 22 C 1.38558 * 120.17044 * 0.02562 * 20 19 18 23 23 C 1.38315 * 120.33738 * 0.02562 * 22 20 19 24 24 C 1.38072 * 120.16349 * 359.73587 * 23 22 20 25 25 Cl 1.73599 * 120.08770 * 180.25623 * 24 23 22 26 26 C 1.39992 * 119.85684 * 359.97438 * 15 14 13 27 27 C 1.36601 * 119.92787 * 0.02562 * 26 15 14 28 28 H 1.08997 * 109.47599 * 300.00614 * 1 2 3 29 29 H 1.09003 * 109.47191 * 60.00362 * 1 2 3 30 30 H 1.09005 * 109.47005 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47187 * 240.00042 * 2 1 3 32 32 H 1.08999 * 109.46760 * 119.99431 * 2 1 3 33 33 H 0.96997 * 120.00131 * 180.02562 * 7 6 4 34 34 H 1.07992 * 119.96456 * 0.02562 * 13 12 3 35 35 H 1.07996 * 120.04127 * 180.27445 * 14 13 12 36 36 H 1.07993 * 120.08231 * 359.95514 * 19 18 17 37 37 H 1.07997 * 119.83100 * 180.02562 * 22 20 19 38 38 H 1.07996 * 119.91699 * 180.02562 * 23 22 20 39 39 H 1.07999 * 120.03863 * 180.02562 * 26 15 14 40 40 H 1.07993 * 119.96467 * 179.97438 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2200 2.0349 -1.1835 5 1 1.9089 3.0633 -1.2923 6 6 2.8250 1.3763 -2.2462 7 7 3.3571 0.1872 -2.0658 8 14 2.8829 2.1795 -3.9317 9 1 3.6183 3.4665 -3.8417 10 1 3.5780 1.2784 -4.8858 11 1 1.4991 2.4323 -4.4074 12 6 2.2761 2.0263 1.2018 13 6 2.7401 3.3407 1.2000 14 6 2.9898 3.9801 2.3810 15 6 2.7843 3.3119 3.5939 16 7 3.0331 3.9471 4.7747 17 7 2.6241 5.1572 4.9548 18 6 1.8173 5.7510 4.0259 19 6 0.7429 5.0461 3.4755 20 6 -0.0679 5.6527 2.5382 21 17 -1.4024 4.7792 1.8527 22 6 0.1810 6.9568 2.1418 23 6 1.2427 7.6604 2.6811 24 6 2.0599 7.0686 3.6236 25 17 3.3880 7.9557 4.3040 26 6 2.3228 1.9902 3.5921 27 6 2.0750 1.3566 2.4076 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.7799 -0.2726 -2.8078 34 1 2.8980 3.8556 0.2640 35 1 3.3451 4.9999 2.3791 36 1 0.5481 4.0294 3.7830 37 1 -0.4574 7.4264 1.4081 38 1 1.4302 8.6767 2.3675 39 1 2.1628 1.4721 4.5261 40 1 1.7193 0.3369 2.4054 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104224658.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:43 Heat of formation + Delta-G solvation = 105.841152 kcal Electronic energy + Delta-G solvation = -27772.363617 eV Core-core repulsion = 23833.343308 eV Total energy + Delta-G solvation = -3939.020310 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 363.060 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.41689 -38.83362 -37.50870 -36.65982 -36.03935 -35.43071 -32.50040 -31.43989 -30.72174 -30.53129 -29.94372 -28.30677 -25.68172 -24.50515 -22.96805 -22.67531 -21.87696 -20.96763 -19.90917 -17.88568 -17.69650 -16.72064 -16.33639 -16.03644 -15.35830 -15.16654 -14.71986 -14.27938 -14.18434 -13.90839 -13.61020 -13.25377 -13.00268 -12.84069 -12.65582 -12.54363 -12.34170 -12.26312 -12.13847 -11.77457 -11.71534 -11.44986 -11.28979 -11.09924 -11.01795 -10.94860 -10.80003 -10.67823 -10.65155 -10.35767 -10.08864 -9.54380 -9.49308 -9.03737 -8.60154 -8.39681 -8.13033 -6.90132 -6.43194 -4.34023 0.42652 1.01593 1.48897 2.03931 2.25601 2.27847 2.68043 2.97348 3.00010 3.00598 3.51791 3.76792 4.37741 4.51257 4.55914 4.69141 4.76714 4.97101 5.06153 5.29487 5.44486 5.50524 5.56003 5.71051 5.76606 5.84626 6.01294 6.03148 6.04327 6.06710 6.09919 6.31949 6.36202 6.41953 6.54198 6.66806 6.73346 6.94956 7.02781 7.09795 7.17487 7.18716 7.51827 7.81703 8.27891 8.81808 8.96771 9.18350 10.22810 Molecular weight = 363.06amu Principal moments of inertia in cm(-1) A = 0.010562 B = 0.003597 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.275610 B = 7782.690935 C = 7903.976805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.089 3.911 3 N -0.396 5.396 4 C -0.318 4.318 5 H 0.094 0.906 6 C 0.044 3.956 7 N -0.855 5.855 8 Si 0.927 3.073 9 H -0.268 1.268 10 H -0.279 1.279 11 H -0.269 1.269 12 C 0.239 3.761 13 C -0.194 4.194 14 C -0.037 4.037 15 C -0.173 4.173 16 N -0.086 5.086 17 N -0.231 5.231 18 C 0.055 3.945 19 C -0.089 4.089 20 C -0.017 4.017 21 Cl -0.060 7.060 22 C -0.106 4.106 23 C -0.096 4.096 24 C -0.022 4.022 25 Cl -0.053 7.053 26 C 0.000 4.000 27 C -0.234 4.234 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.120 0.880 32 H 0.057 0.943 33 H 0.277 0.723 34 H 0.124 0.876 35 H 0.102 0.898 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.116 0.884 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.095 7.152 4.431 10.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.034 4.034 3 N -0.075 5.075 4 C -0.447 4.447 5 H 0.112 0.888 6 C -0.164 4.164 7 N -0.488 5.488 8 Si 0.752 3.248 9 H -0.192 1.192 10 H -0.204 1.204 11 H -0.194 1.194 12 C 0.114 3.886 13 C -0.218 4.218 14 C -0.061 4.061 15 C -0.286 4.286 16 N 0.033 4.967 17 N -0.115 5.115 18 C -0.047 4.047 19 C -0.113 4.113 20 C -0.045 4.045 21 Cl -0.031 7.031 22 C -0.126 4.126 23 C -0.116 4.116 24 C -0.054 4.054 25 Cl -0.023 7.023 26 C -0.024 4.024 27 C -0.259 4.259 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.138 0.862 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.141 0.859 35 H 0.120 0.880 36 H 0.161 0.839 37 H 0.158 0.842 38 H 0.161 0.839 39 H 0.134 0.866 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.499 6.850 5.118 10.166 hybrid contribution -0.477 0.266 -2.186 2.254 sum -5.976 7.116 2.932 9.744 Atomic orbital electron populations 1.22122 0.97485 1.00582 1.01739 1.21893 0.92345 0.84471 1.04733 1.42755 1.51219 1.11112 1.02416 1.19503 1.38195 0.98779 0.88260 0.88803 1.25614 0.93862 0.96088 1.00835 1.69730 1.32521 1.13370 1.33202 0.85965 0.79067 0.79355 0.80371 1.19245 1.20416 1.19380 1.18471 0.90826 0.92527 0.86739 1.20126 1.09252 0.94851 0.97559 1.20777 0.96207 0.97162 0.91974 1.19153 1.21753 0.97652 0.90030 1.74542 1.04175 0.99944 1.18054 1.75152 1.09818 1.05688 1.20813 1.19739 0.96486 0.93700 0.94790 1.21423 0.94197 1.00242 0.95401 1.20736 0.92515 0.93233 0.98020 1.98387 1.44844 1.76161 1.83723 1.20999 0.98219 0.92592 1.00789 1.20851 0.94151 1.00612 0.95959 1.20927 0.93262 0.92407 0.98775 1.98365 1.45569 1.74283 1.84129 1.20225 0.94038 0.90851 0.97272 1.20184 1.14199 1.00441 0.91039 0.93527 0.92493 0.92901 0.86227 0.92480 0.91201 0.85854 0.87957 0.83899 0.84165 0.83945 0.86602 0.86335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 10.24 37.16 0.38 -2.34 16 2 C 0.09 1.74 5.49 -4.04 -0.02 1.72 16 3 N -0.40 -8.55 2.60 -113.11 -0.29 -8.85 16 4 C -0.32 -7.26 8.32 -15.14 -0.13 -7.39 16 5 H 0.09 2.12 7.00 -52.49 -0.37 1.75 16 6 C 0.04 0.99 5.22 -17.45 -0.09 0.90 16 7 N -0.85 -20.20 11.06 55.49 0.61 -19.59 16 8 Si 0.93 17.90 29.56 -169.99 -5.03 12.88 16 9 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 10 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 11 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 12 C 0.24 4.92 6.52 -83.84 -0.55 4.38 16 13 C -0.19 -3.92 9.20 -39.75 -0.37 -4.29 16 14 C -0.04 -0.70 7.05 -39.51 -0.28 -0.98 16 15 C -0.17 -3.20 4.02 -84.53 -0.34 -3.54 16 16 N -0.09 -1.59 11.66 32.21 0.38 -1.21 16 17 N -0.23 -4.12 11.10 32.19 0.36 -3.76 16 18 C 0.06 0.91 4.04 -84.54 -0.34 0.57 16 19 C -0.09 -1.42 6.88 -39.10 -0.27 -1.69 16 20 C -0.02 -0.25 6.31 -39.56 -0.25 -0.50 16 21 Cl -0.06 -0.85 28.95 -51.86 -1.50 -2.35 16 22 C -0.11 -1.31 9.82 -39.43 -0.39 -1.69 16 23 C -0.10 -1.18 9.81 -39.61 -0.39 -1.56 16 24 C -0.02 -0.33 6.15 -39.02 -0.24 -0.57 16 25 Cl -0.05 -0.73 28.46 -51.86 -1.48 -2.21 16 26 C 0.00 0.00 9.68 -39.52 -0.38 -0.38 16 27 C -0.23 -4.32 9.15 -39.75 -0.36 -4.69 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.12 2.61 5.37 -51.93 -0.28 2.33 16 32 H 0.06 1.06 6.08 -51.93 -0.32 0.74 16 33 H 0.28 6.23 8.31 -40.82 -0.34 5.89 16 34 H 0.12 2.57 6.53 -52.49 -0.34 2.23 16 35 H 0.10 1.94 6.75 -52.49 -0.35 1.59 16 36 H 0.14 2.43 6.67 -52.49 -0.35 2.08 16 37 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.12 2.03 6.08 -52.49 -0.32 1.71 16 LS Contribution 363.99 15.07 5.49 5.49 Total: -1.00 -23.86 363.99 -9.48 -33.34 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -4.00 Total: 8.32 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: -4.01 Total: -22.05 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 1.05 Total: -33.41 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.88 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -2.98 Total: -4.56 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -23.86 -9.48 -33.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104224658.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.180 kcal (2) G-P(sol) polarization free energy of solvation -23.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds