Wall clock time and date at job start Tue Mar 31 2020 06:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86791 * 120.00235 * 2 1 4 4 H 1.48504 * 109.47300 * 274.11673 * 3 2 1 5 5 H 1.48498 * 109.47519 * 34.11683 * 3 2 1 6 6 H 1.48503 * 109.47461 * 154.11956 * 3 2 1 7 7 C 1.37876 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99903 * 4.88482 * 7 2 1 9 9 C 1.50700 * 120.00069 * 184.88534 * 7 2 1 10 10 N 1.46507 * 109.46901 * 184.96934 * 9 7 2 11 11 C 1.29312 * 119.99489 * 116.37673 * 10 9 7 12 12 C 1.50700 * 120.00526 * 354.12590 * 11 10 9 13 13 C 1.50698 * 109.46806 * 86.96856 * 12 11 10 14 14 N 1.30104 * 124.95508 * 305.37350 * 13 12 11 15 15 C 1.35783 * 109.64466 * 180.02562 * 14 13 12 16 16 C 1.39751 * 133.59940 * 180.28743 * 15 14 13 17 17 C 1.36599 * 119.88371 * 180.13118 * 16 15 14 18 18 C 1.38777 * 120.67117 * 359.54275 * 17 16 15 19 19 C 1.37858 * 120.44730 * 0.23647 * 18 17 16 20 20 C 1.38832 * 119.69237 * 359.97438 * 19 18 17 21 21 N 1.36042 * 124.94633 * 125.41655 * 13 12 11 22 22 H 0.96998 * 126.35173 * 359.95952 * 21 13 12 23 23 C 1.47630 * 119.99318 * 174.12955 * 11 10 9 24 24 C 1.39625 * 120.14423 * 179.72165 * 23 11 10 25 25 C 1.37952 * 119.84353 * 179.81179 * 24 23 11 26 26 C 1.38357 * 120.15324 * 0.44491 * 25 24 23 27 27 N 1.48006 * 119.85038 * 179.76689 * 26 25 24 28 28 O 1.21800 * 119.99978 * 180.02562 * 27 26 25 29 29 O 1.21794 * 119.99639 * 0.02562 * 27 26 25 30 30 C 1.38363 * 120.30116 * 359.78165 * 26 25 24 31 31 C 1.37948 * 120.15143 * 0.02562 * 30 26 25 32 32 H 0.97003 * 119.99576 * 5.00905 * 1 2 3 33 33 H 1.08995 * 109.47109 * 64.97307 * 9 7 2 34 34 H 1.09002 * 109.47074 * 304.97025 * 9 7 2 35 35 H 1.08997 * 109.46788 * 326.97574 * 12 11 10 36 36 H 1.08994 * 109.47240 * 206.96976 * 12 11 10 37 37 H 1.07999 * 120.05599 * 359.97438 * 16 15 14 38 38 H 1.08001 * 119.66128 * 179.80505 * 17 16 15 39 39 H 1.08001 * 119.77562 * 180.24894 * 18 17 16 40 40 H 1.08002 * 120.14871 * 180.02562 * 19 18 17 41 41 H 1.08006 * 120.08154 * 359.97438 * 24 23 11 42 42 H 1.08007 * 119.92447 * 180.22887 * 25 24 23 43 43 H 1.08002 * 119.92411 * 179.97438 * 30 26 25 44 44 H 1.08003 * 120.07543 * 179.97438 * 31 30 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4097 2.0966 -1.3965 5 1 1.4930 2.6259 0.7852 6 1 3.5876 1.4165 0.6111 7 6 2.0045 -1.1941 -0.0005 8 1 1.4674 -2.1277 -0.0806 9 6 3.5074 -1.1966 0.1106 10 7 4.0053 -2.5670 -0.0318 11 6 4.7651 -2.8783 -1.0308 12 6 5.0310 -1.8695 -2.1184 13 6 6.2081 -1.0120 -1.7311 14 7 6.3079 -0.3402 -0.6214 15 6 7.4929 0.3223 -0.5939 16 6 8.1033 1.1671 0.3371 17 6 9.3340 1.6968 0.0712 18 6 9.9926 1.3976 -1.1131 19 6 9.4116 0.5631 -2.0440 20 6 8.1593 0.0188 -1.7929 21 7 7.3209 -0.8267 -2.4915 22 1 7.4936 -1.2169 -3.3626 23 6 5.3720 -4.2219 -1.1059 24 6 6.1883 -4.5633 -2.1861 25 6 6.7554 -5.8193 -2.2480 26 6 6.5095 -6.7430 -1.2476 27 7 7.1173 -8.0904 -1.3234 28 8 6.9023 -8.9057 -0.4445 29 8 7.8323 -8.3837 -2.2647 30 6 5.6979 -6.4129 -0.1767 31 6 5.1276 -5.1591 -0.1002 32 1 -0.4850 0.8369 -0.0734 33 1 3.8004 -0.8029 1.0838 34 1 3.9310 -0.5725 -0.6763 35 1 4.1514 -1.2399 -2.2528 36 1 5.2514 -2.3897 -3.0504 37 1 7.6017 1.4027 1.2641 38 1 9.8010 2.3517 0.7918 39 1 10.9669 1.8213 -1.3068 40 1 9.9286 0.3332 -2.9639 41 1 6.3773 -3.8448 -2.9700 42 1 7.3899 -6.0835 -3.0811 43 1 5.5098 -7.1387 0.6006 44 1 4.4939 -4.9029 0.7360 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000105780558.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:01 Heat of formation + Delta-G solvation = 121.234066 kcal Electronic energy + Delta-G solvation = -31244.372807 eV Core-core repulsion = 26938.150853 eV Total energy + Delta-G solvation = -4306.221954 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.132 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.27806 -42.21187 -39.72706 -37.74475 -36.66193 -36.63304 -33.26863 -33.12644 -31.95872 -31.77094 -30.83961 -30.05343 -28.75454 -27.49977 -26.49555 -23.50077 -23.21376 -22.55433 -22.21065 -21.81854 -21.15738 -19.46695 -18.79395 -18.67287 -17.95204 -17.59309 -17.48304 -16.89217 -15.97960 -15.91777 -15.57595 -15.28779 -15.07040 -14.50295 -14.40679 -14.09197 -14.02143 -13.97092 -13.89361 -13.42284 -13.18436 -12.61424 -12.31839 -12.17935 -11.99612 -11.75776 -11.66312 -11.61642 -11.47722 -11.42901 -11.23583 -11.22086 -10.79957 -10.76675 -10.68752 -10.09311 -9.93315 -9.66105 -9.56592 -8.99751 -8.66333 -8.58816 -8.44485 -8.18841 -6.24395 -4.26310 -0.35346 0.82830 0.83491 1.11199 1.34070 1.40207 2.35559 2.70760 2.78256 3.17688 3.28250 3.37895 3.41855 3.79105 4.03391 4.08847 4.19774 4.28418 4.32858 4.47517 4.56596 4.77004 4.85313 4.88433 4.94465 5.02744 5.07983 5.13500 5.24488 5.32101 5.33899 5.45828 5.50323 5.58654 5.62542 5.67067 5.92839 6.05234 6.14596 6.24549 6.28557 6.38715 6.40792 6.43926 6.72860 6.77584 6.98407 7.18158 7.45857 7.57112 7.86724 8.04120 8.44248 8.80709 9.34397 10.87365 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.006628 B = 0.003656 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4223.565835 B = 7656.364849 C =11101.614800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.079 3.921 3 Si 0.865 3.135 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.253 1.253 7 C -0.524 4.524 8 H 0.080 0.920 9 C 0.140 3.860 10 N -0.409 5.409 11 C 0.132 3.868 12 C -0.051 4.051 13 C 0.297 3.703 14 N -0.471 5.471 15 C 0.050 3.950 16 C -0.062 4.062 17 C -0.132 4.132 18 C -0.105 4.105 19 C -0.113 4.113 20 C 0.046 3.954 21 N -0.599 5.599 22 H 0.420 0.580 23 C 0.036 3.964 24 C -0.116 4.116 25 C -0.053 4.053 26 C -0.054 4.054 27 N 0.033 4.967 28 O -0.166 6.166 29 O -0.170 6.170 30 C -0.053 4.053 31 C -0.085 4.085 32 H 0.267 0.733 33 H 0.059 0.941 34 H 0.025 0.975 35 H 0.128 0.872 36 H 0.096 0.904 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.121 0.879 41 H 0.143 0.857 42 H 0.152 0.848 43 H 0.154 0.846 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.311 -2.750 -7.126 20.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.125 4.125 3 Si 0.691 3.309 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.177 1.177 7 C -0.562 4.562 8 H 0.098 0.902 9 C 0.013 3.987 10 N -0.117 5.117 11 C -0.060 4.060 12 C -0.092 4.092 13 C 0.028 3.972 14 N -0.191 5.191 15 C -0.068 4.068 16 C -0.081 4.081 17 C -0.152 4.152 18 C -0.125 4.125 19 C -0.134 4.134 20 C -0.064 4.064 21 N -0.211 5.211 22 H 0.259 0.741 23 C 0.035 3.965 24 C -0.137 4.137 25 C -0.073 4.073 26 C -0.138 4.138 27 N 0.550 4.450 28 O -0.381 6.381 29 O -0.384 6.384 30 C -0.072 4.072 31 C -0.106 4.106 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.043 0.957 35 H 0.146 0.854 36 H 0.114 0.886 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.139 0.861 41 H 0.161 0.839 42 H 0.170 0.830 43 H 0.172 0.828 44 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 17.740 -2.136 -5.455 18.682 hybrid contribution 1.292 1.001 -1.821 2.447 sum 19.033 -1.135 -7.276 20.408 Atomic orbital electron populations 1.69891 1.06169 1.27557 1.49191 1.24812 0.94688 0.98792 0.94190 0.86980 0.81270 0.83927 0.78756 1.20314 1.20906 1.17716 1.20872 0.87865 0.95289 1.52176 0.90215 1.20722 0.96745 0.82681 0.98543 1.71535 0.99438 1.23503 1.17180 1.21995 0.98194 0.91529 0.94245 1.19941 0.94594 0.95854 0.98797 1.23348 0.88765 0.97291 0.87747 1.70598 1.18019 1.11444 1.19027 1.19176 0.92120 1.00960 0.94569 1.20107 0.94614 0.95170 0.98226 1.20627 0.95112 1.01564 0.97901 1.20852 0.99802 0.98051 0.93791 1.19914 0.92486 1.00243 1.00739 1.18864 0.94681 0.97955 0.94890 1.43065 1.16273 1.41885 1.19911 0.74129 1.19188 0.92198 0.92348 0.92815 1.21209 0.98058 0.95696 0.98727 1.20842 0.97571 0.91807 0.97039 1.21172 1.06514 0.84053 1.02070 1.43653 0.98884 1.02907 0.99522 1.94534 1.65393 1.45217 1.32954 1.94511 1.34503 1.83952 1.25475 1.21054 0.92607 0.97700 0.95808 1.21514 0.98698 0.90555 0.99805 0.92300 0.92338 0.95721 0.85399 0.88564 0.85320 0.85467 0.85441 0.86121 0.83910 0.83048 0.82807 0.82021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.95 55.43 0.77 -25.52 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 3 Si 0.86 20.76 27.42 -169.99 -4.66 16.09 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.25 -6.00 6.66 56.52 0.38 -5.62 16 7 C -0.52 -14.23 9.93 -34.44 -0.34 -14.57 16 8 H 0.08 2.38 8.06 -52.48 -0.42 1.96 16 9 C 0.14 3.22 4.14 -5.19 -0.02 3.20 16 10 N -0.41 -8.06 9.60 -56.03 -0.54 -8.60 16 11 C 0.13 2.05 6.18 -79.82 -0.49 1.55 16 12 C -0.05 -0.68 4.88 -29.04 -0.14 -0.82 16 13 C 0.30 4.22 7.12 -154.83 -1.10 3.12 16 14 N -0.47 -8.30 9.64 -8.23 -0.08 -8.38 16 15 C 0.05 0.79 7.23 -84.70 -0.61 0.17 16 16 C -0.06 -0.84 10.05 -39.61 -0.40 -1.24 16 17 C -0.13 -1.38 9.96 -39.97 -0.40 -1.78 16 18 C -0.11 -0.99 10.03 -39.52 -0.40 -1.38 16 19 C -0.11 -1.13 10.07 -39.50 -0.40 -1.53 16 20 C 0.05 0.58 7.30 -83.99 -0.61 -0.03 16 21 N -0.60 -6.52 6.23 -8.00 -0.05 -6.57 16 22 H 0.42 2.78 8.96 -40.82 -0.37 2.42 16 23 C 0.04 0.45 5.87 -105.03 -0.62 -0.16 16 24 C -0.12 -1.12 9.37 -39.17 -0.37 -1.48 16 25 C -0.05 -0.52 9.54 -39.64 -0.38 -0.90 16 26 C -0.05 -0.64 6.86 -79.86 -0.55 -1.19 16 27 N 0.03 0.44 4.45 34.00 0.15 0.59 16 28 O -0.17 -2.36 18.43 -29.46 -0.54 -2.91 16 29 O -0.17 -2.34 18.43 -29.46 -0.54 -2.89 16 30 C -0.05 -0.60 9.54 -39.64 -0.38 -0.98 16 31 C -0.09 -1.07 9.58 -39.17 -0.38 -1.44 16 32 H 0.27 7.37 8.32 -40.82 -0.34 7.03 16 33 H 0.06 1.45 7.76 -51.93 -0.40 1.04 16 34 H 0.03 0.55 3.39 -51.93 -0.18 0.38 16 35 H 0.13 2.00 6.48 -51.93 -0.34 1.67 16 36 H 0.10 0.81 6.31 -51.93 -0.33 0.49 16 37 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 40 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 41 H 0.14 0.93 6.29 -52.48 -0.33 0.60 16 42 H 0.15 1.18 7.60 -52.48 -0.40 0.78 16 43 H 0.15 1.53 7.60 -52.49 -0.40 1.13 16 44 H 0.16 2.12 7.56 -52.48 -0.40 1.72 16 LS Contribution 382.69 15.07 5.77 5.77 Total: -1.00 -34.21 382.69 -11.81 -46.02 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -4.41 Total: 3.76 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -7.68 Total: -17.36 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: 0.26 Total: -48.48 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -1.09 Total: -5.79 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.66 Total: 16.09 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.21 -11.81 -46.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105780558.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.250 kcal (2) G-P(sol) polarization free energy of solvation -34.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds