Wall clock time and date at job start Tue Mar 31 2020 05:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34228 * 116.99884 * 2 1 4 4 O 1.20828 * 119.99976 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00159 * 180.02562 * 3 2 1 6 6 N 1.46501 * 109.47108 * 180.02562 * 5 3 2 7 7 C 1.33797 * 120.24025 * 90.02929 * 6 5 3 8 8 O 1.21633 * 126.55147 * 359.93339 * 7 6 5 9 9 S 1.77221 * 106.88865 * 180.20411 * 7 6 5 10 10 C 1.77483 * 94.57343 * 359.69416 * 9 7 6 11 11 C 1.35790 * 127.97100 * 180.02562 * 10 9 7 12 12 C 1.46772 * 119.99616 * 8.24888 * 11 10 9 13 13 C 1.40107 * 120.10926 * 197.02239 * 12 11 10 14 14 C 1.37100 * 119.88828 * 179.74890 * 13 12 11 15 15 C 1.39193 * 120.11123 * 0.55154 * 14 13 12 16 16 O 1.35572 * 119.88850 * 179.72582 * 15 14 13 17 17 C 1.34778 * 116.99926 * 181.83753 * 16 15 14 18 18 H 1.08003 * 119.99361 * 354.79251 * 17 16 15 19 19 C 1.38696 * 120.00064 * 174.79293 * 17 16 15 20 20 N 1.31517 * 120.00274 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99709 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47429 * 60.00280 * 21 19 17 23 23 H 1.48500 * 109.46893 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47524 * 299.99971 * 21 19 17 25 25 C 1.39184 * 120.21737 * 359.70068 * 15 14 13 26 26 C 1.37108 * 120.11549 * 0.02562 * 25 15 14 27 27 C 1.32259 * 120.23836 * 270.00019 * 6 5 3 28 28 O 1.21704 * 122.52628 * 359.97438 * 27 6 5 29 29 H 1.08996 * 109.47048 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46816 * 299.99942 * 1 2 3 31 31 H 1.08999 * 109.46869 * 59.99522 * 1 2 3 32 32 H 1.08994 * 109.46707 * 59.99693 * 5 3 2 33 33 H 1.09005 * 109.47000 * 299.99975 * 5 3 2 34 34 H 1.07999 * 120.00159 * 188.25361 * 11 10 9 35 35 H 1.07999 * 120.05424 * 0.02562 * 13 12 11 36 36 H 1.08003 * 119.94519 * 180.27590 * 14 13 12 37 37 H 0.97002 * 120.00428 * 180.02562 * 20 19 17 38 38 H 1.08001 * 119.94202 * 179.97438 * 25 15 14 39 39 H 1.07991 * 120.05901 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.1738 3.3251 1.1564 8 8 4.0378 2.8649 2.2741 9 16 4.6564 4.9807 0.7480 10 6 4.5849 4.7204 -1.0061 11 6 4.8476 5.6135 -1.9947 12 6 5.4189 6.9249 -1.6660 13 6 5.3641 7.9691 -2.5986 14 6 5.8946 9.1937 -2.2849 15 6 6.4971 9.3973 -1.0467 16 8 7.0252 10.6086 -0.7434 17 6 7.6279 10.7303 0.4560 18 1 7.6005 9.9113 1.1596 19 6 8.2832 11.9071 0.7866 20 7 8.3169 12.9042 -0.0705 21 14 9.1179 12.0760 2.4492 22 1 10.1649 11.0319 2.5858 23 1 9.7422 13.4192 2.5554 24 1 8.1107 11.9111 3.5278 25 6 6.5587 8.3617 -0.1189 26 6 6.0261 7.1349 -0.4210 27 6 4.1700 3.3193 -1.1421 28 8 4.0121 2.7858 -2.2245 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 3.9557 0.7810 -0.8908 33 1 3.9565 0.7806 0.8892 34 1 4.6361 5.3589 -3.0227 35 1 4.9008 7.8108 -3.5612 36 1 5.8489 10.0006 -3.0014 37 1 8.7755 13.7271 0.1606 38 1 7.0276 8.5244 0.8403 39 1 6.0741 6.3321 0.2998 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106751201.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:45 Heat of formation + Delta-G solvation = -105.987858 kcal Electronic energy + Delta-G solvation = -28512.876313 eV Core-core repulsion = 24093.712198 eV Total energy + Delta-G solvation = -4419.164114 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 363.070 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.97622 -40.41135 -39.49442 -38.80776 -37.20104 -36.88709 -35.80849 -33.67121 -32.60504 -30.98960 -30.64093 -28.61423 -27.50560 -25.84569 -24.97740 -23.91553 -22.60243 -21.81139 -20.87824 -19.57473 -18.87529 -18.44259 -18.41019 -17.64599 -17.40919 -16.91974 -16.78823 -16.05158 -15.69101 -15.54002 -15.11223 -14.83926 -14.59014 -14.37005 -14.24540 -14.06423 -14.03245 -13.88209 -13.34044 -13.09481 -12.85443 -12.66800 -12.48199 -12.12867 -12.00866 -11.78067 -11.35554 -11.27844 -11.20808 -11.19495 -11.08370 -10.78309 -10.69835 -10.54683 -10.22407 -9.94327 -9.62798 -9.19835 -8.61390 -8.32970 -7.24094 -6.86932 -4.37317 0.27573 0.76265 1.48054 1.58866 1.77488 1.97847 2.05198 2.37372 2.61111 2.92819 2.94968 2.99135 3.01366 3.67339 4.02558 4.26545 4.29237 4.52261 4.71326 4.73557 4.75201 4.80522 4.83831 4.84857 5.05733 5.16133 5.32297 5.33912 5.65408 5.73751 5.86993 5.91932 6.17274 6.28915 6.41467 6.55003 6.70250 6.77382 6.89566 6.99748 7.06418 7.25706 7.38866 7.42422 7.58541 8.56540 9.20114 10.27900 Molecular weight = 363.07amu Principal moments of inertia in cm(-1) A = 0.019941 B = 0.002092 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.804672 B =13383.322127 C =14340.760571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.451 3.549 4 O -0.492 6.492 5 C 0.107 3.893 6 N -0.560 5.560 7 C 0.506 3.494 8 O -0.451 6.451 9 S 0.021 5.979 10 C -0.306 4.306 11 C 0.130 3.870 12 C -0.224 4.224 13 C -0.024 4.024 14 C -0.197 4.197 15 C 0.171 3.829 16 O -0.146 6.146 17 C -0.389 4.389 18 H 0.103 0.897 19 C 0.043 3.957 20 N -0.839 5.839 21 Si 0.948 3.052 22 H -0.265 1.265 23 H -0.274 1.274 24 H -0.264 1.264 25 C -0.237 4.237 26 C -0.026 4.026 27 C 0.572 3.428 28 O -0.491 6.491 29 H 0.105 0.895 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.148 0.852 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.279 0.721 38 H 0.135 0.865 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.673 -19.183 -1.045 20.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.291 3.709 4 O -0.377 6.377 5 C -0.019 4.019 6 N -0.306 5.306 7 C 0.190 3.810 8 O -0.325 6.325 9 S 0.259 5.741 10 C -0.421 4.421 11 C 0.104 3.896 12 C -0.226 4.226 13 C -0.043 4.043 14 C -0.216 4.216 15 C 0.112 3.888 16 O -0.044 6.044 17 C -0.463 4.463 18 H 0.120 0.880 19 C -0.165 4.165 20 N -0.470 5.470 21 Si 0.771 3.229 22 H -0.189 1.189 23 H -0.199 1.199 24 H -0.189 1.189 25 C -0.256 4.256 26 C -0.047 4.047 27 C 0.364 3.636 28 O -0.367 6.367 29 H 0.123 0.877 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.160 0.840 33 H 0.157 0.843 34 H 0.166 0.834 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.089 0.911 38 H 0.153 0.847 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.669 -17.905 -0.309 19.480 hybrid contribution -0.217 -1.018 0.121 1.048 sum -7.886 -18.923 -0.189 20.502 Atomic orbital electron populations 1.23326 0.75595 1.03931 1.02874 1.86458 1.23983 1.32557 1.84149 1.23804 0.92051 0.82062 0.72974 1.90733 1.66653 1.36292 1.44063 1.21135 0.88761 0.83033 1.08989 1.46126 1.62133 1.13308 1.08995 1.23356 0.78599 0.93737 0.85345 1.90874 1.49974 1.71056 1.20636 1.86658 1.78173 1.08498 1.00799 1.22937 1.25853 0.97035 0.96253 1.21889 0.81573 0.88986 0.97127 1.18344 1.12999 0.93638 0.97570 1.20730 0.94793 0.91446 0.97284 1.20050 1.06896 0.98381 0.96280 1.19664 0.91136 0.85256 0.92786 1.83893 1.58885 1.25595 1.36068 1.21597 1.32181 1.02339 0.90217 0.88012 1.25501 0.96378 0.94272 1.00364 1.70000 1.37607 1.04277 1.35085 0.85651 0.79447 0.78530 0.79281 1.18945 1.19884 1.18917 1.20939 1.09440 0.93267 1.01991 1.21092 0.93538 0.95958 0.94070 1.17492 0.76053 0.87114 0.82910 1.90850 1.49288 1.70678 1.25877 0.87706 0.91674 0.91656 0.84002 0.84272 0.83449 0.85865 0.85661 0.91079 0.84694 0.85862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.53 10.57 -39.25 -0.41 -3.95 16 3 C 0.45 5.51 8.02 36.01 0.29 5.80 16 4 O -0.49 -7.71 16.18 -18.75 -0.30 -8.01 16 5 C 0.11 1.11 5.86 -5.19 -0.03 1.08 16 6 N -0.56 -7.54 1.97 -122.37 -0.24 -7.78 16 7 C 0.51 7.39 8.39 53.62 0.45 7.84 16 8 O -0.45 -7.21 17.38 5.25 0.09 -7.12 16 9 S 0.02 0.30 18.88 -107.50 -2.03 -1.73 16 10 C -0.31 -4.37 6.35 -37.02 -0.24 -4.60 16 11 C 0.13 1.74 9.83 -37.01 -0.36 1.37 16 12 C -0.22 -3.44 5.83 -105.05 -0.61 -4.05 16 13 C -0.02 -0.36 9.77 -39.29 -0.38 -0.74 16 14 C -0.20 -3.54 9.95 -39.64 -0.39 -3.93 16 15 C 0.17 3.60 6.67 -38.88 -0.26 3.34 16 16 O -0.15 -3.67 9.74 0.74 0.01 -3.66 16 17 C -0.39 -9.61 9.48 30.90 0.29 -9.32 16 18 H 0.10 2.29 5.17 -52.48 -0.27 2.02 16 19 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 20 N -0.84 -22.05 13.67 55.48 0.76 -21.29 16 21 Si 0.95 18.33 29.55 -169.99 -5.02 13.31 16 22 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 23 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 24 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 25 C -0.24 -4.55 9.12 -39.64 -0.36 -4.91 16 26 C -0.03 -0.43 8.68 -39.29 -0.34 -0.77 16 27 C 0.57 8.28 7.61 -13.93 -0.11 8.17 16 28 O -0.49 -7.66 16.85 5.18 0.09 -7.57 16 29 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 31 H 0.06 0.50 8.13 -51.93 -0.42 0.07 16 32 H 0.14 1.17 7.51 -51.93 -0.39 0.78 16 33 H 0.14 1.11 7.69 -51.93 -0.40 0.71 16 34 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 36 H 0.13 2.13 8.06 -52.48 -0.42 1.70 16 37 H 0.28 6.70 8.31 -40.82 -0.34 6.36 16 38 H 0.14 2.56 5.60 -52.49 -0.29 2.27 16 39 H 0.12 1.91 4.27 -25.56 -0.11 1.80 16 LS Contribution 364.85 15.07 5.50 5.50 Total: -1.00 -30.89 364.85 -5.79 -36.67 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -3.13 Total: 4.05 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -1.09 Total: 1.59 kcal Atomic # 7 Polarization: -29.59 SS G_CDS: 0.52 Total: -29.07 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -0.53 Total: -30.31 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.02 Total: 13.31 kcal Atomic # 16 Polarization: 0.30 SS G_CDS: -2.03 Total: -1.73 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.89 -5.79 -36.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106751201.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.313 kcal (2) G-P(sol) polarization free energy of solvation -30.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds