Wall clock time and date at job start Tue Mar 31 2020 05:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34228 * 116.99884 * 2 1 4 4 O 1.20828 * 119.99976 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00159 * 180.02562 * 3 2 1 6 6 N 1.46501 * 109.47108 * 180.02562 * 5 3 2 7 7 C 1.33797 * 120.24025 * 90.02929 * 6 5 3 8 8 O 1.21633 * 126.55147 * 359.93339 * 7 6 5 9 9 S 1.77221 * 106.88865 * 180.20411 * 7 6 5 10 10 C 1.77483 * 94.57343 * 359.69416 * 9 7 6 11 11 C 1.35790 * 127.97100 * 180.02562 * 10 9 7 12 12 C 1.46772 * 119.99616 * 8.24888 * 11 10 9 13 13 C 1.40107 * 120.10926 * 197.02239 * 12 11 10 14 14 C 1.37100 * 119.88828 * 179.74890 * 13 12 11 15 15 C 1.39193 * 120.11123 * 0.55154 * 14 13 12 16 16 O 1.35572 * 119.88850 * 179.72582 * 15 14 13 17 17 C 1.34778 * 116.99926 * 181.83753 * 16 15 14 18 18 H 1.08003 * 119.99361 * 354.79251 * 17 16 15 19 19 C 1.38696 * 120.00064 * 174.79293 * 17 16 15 20 20 N 1.31517 * 120.00274 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99709 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47429 * 60.00280 * 21 19 17 23 23 H 1.48500 * 109.46893 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47524 * 299.99971 * 21 19 17 25 25 C 1.39184 * 120.21737 * 359.70068 * 15 14 13 26 26 C 1.37108 * 120.11549 * 0.02562 * 25 15 14 27 27 C 1.32259 * 120.23836 * 270.00019 * 6 5 3 28 28 O 1.21704 * 122.52628 * 359.97438 * 27 6 5 29 29 H 1.08996 * 109.47048 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46816 * 299.99942 * 1 2 3 31 31 H 1.08999 * 109.46869 * 59.99522 * 1 2 3 32 32 H 1.08994 * 109.46707 * 59.99693 * 5 3 2 33 33 H 1.09005 * 109.47000 * 299.99975 * 5 3 2 34 34 H 1.07999 * 120.00159 * 188.25361 * 11 10 9 35 35 H 1.07999 * 120.05424 * 0.02562 * 13 12 11 36 36 H 1.08003 * 119.94519 * 180.27590 * 14 13 12 37 37 H 0.97002 * 120.00428 * 180.02562 * 20 19 17 38 38 H 1.08001 * 119.94202 * 179.97438 * 25 15 14 39 39 H 1.07991 * 120.05901 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.1738 3.3251 1.1564 8 8 4.0378 2.8649 2.2741 9 16 4.6564 4.9807 0.7480 10 6 4.5849 4.7204 -1.0061 11 6 4.8476 5.6135 -1.9947 12 6 5.4189 6.9249 -1.6660 13 6 5.3641 7.9691 -2.5986 14 6 5.8946 9.1937 -2.2849 15 6 6.4971 9.3973 -1.0467 16 8 7.0252 10.6086 -0.7434 17 6 7.6279 10.7303 0.4560 18 1 7.6005 9.9113 1.1596 19 6 8.2832 11.9071 0.7866 20 7 8.3169 12.9042 -0.0705 21 14 9.1179 12.0760 2.4492 22 1 10.1649 11.0319 2.5858 23 1 9.7422 13.4192 2.5554 24 1 8.1107 11.9111 3.5278 25 6 6.5587 8.3617 -0.1189 26 6 6.0261 7.1349 -0.4210 27 6 4.1700 3.3193 -1.1421 28 8 4.0121 2.7858 -2.2245 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 3.9557 0.7810 -0.8908 33 1 3.9565 0.7806 0.8892 34 1 4.6361 5.3589 -3.0227 35 1 4.9008 7.8108 -3.5612 36 1 5.8489 10.0006 -3.0014 37 1 8.7755 13.7271 0.1606 38 1 7.0276 8.5244 0.8403 39 1 6.0741 6.3321 0.2998 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106751201.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:44 Heat of formation + Delta-G solvation = -124.801557 kcal Electronic energy + Delta-G solvation = -28513.692136 eV Core-core repulsion = 24093.712198 eV Total energy + Delta-G solvation = -4419.979937 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 363.070 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.07461 -41.35895 -40.98901 -40.04513 -38.67061 -37.81680 -36.96732 -35.02770 -34.19978 -32.14213 -31.94508 -29.80896 -28.35503 -27.45018 -26.20893 -25.08576 -23.96821 -23.05450 -21.96380 -20.78712 -20.18192 -19.91324 -19.36907 -18.97982 -18.66997 -17.93563 -17.69063 -17.16217 -16.99078 -16.68316 -16.42452 -16.32226 -15.96113 -15.77644 -15.68145 -15.45680 -14.80609 -14.69842 -14.65445 -14.46560 -14.30349 -13.60402 -13.52428 -13.47872 -13.13705 -13.06575 -12.75775 -12.63705 -12.52648 -12.26563 -12.17088 -12.03528 -11.96868 -11.84661 -11.38659 -11.30597 -10.97048 -10.84999 -9.99605 -9.67231 -8.66363 -8.56826 -6.21470 -0.92966 -0.41862 0.24833 0.42545 0.57952 0.85709 0.90834 1.21358 1.37026 1.45598 1.51941 1.56536 1.86950 2.13384 2.76520 2.83598 3.09746 3.35045 3.44734 3.71813 3.80666 3.84670 3.96243 4.00148 4.03886 4.21771 4.24437 4.35697 4.41557 4.58336 4.63643 4.79994 4.90798 5.09691 5.10687 5.13222 5.26444 5.45482 5.55864 5.58245 5.59473 5.92042 5.99783 6.17479 6.41579 6.87318 7.59970 8.63736 Molecular weight = 363.07amu Principal moments of inertia in cm(-1) A = 0.019941 B = 0.002092 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.804672 B =13383.322127 C =14340.760571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.350 6.350 3 C 0.451 3.549 4 O -0.534 6.534 5 C 0.101 3.899 6 N -0.560 5.560 7 C 0.513 3.487 8 O -0.464 6.464 9 S 0.006 5.994 10 C -0.295 4.295 11 C 0.141 3.859 12 C -0.202 4.202 13 C -0.006 4.006 14 C -0.207 4.207 15 C 0.147 3.853 16 O -0.206 6.206 17 C -0.417 4.417 18 H 0.109 0.891 19 C -0.013 4.013 20 N -0.905 5.905 21 Si 1.015 2.985 22 H -0.256 1.256 23 H -0.272 1.272 24 H -0.257 1.257 25 C -0.247 4.247 26 C -0.031 4.031 27 C 0.576 3.424 28 O -0.495 6.495 29 H 0.141 0.859 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.168 0.832 33 H 0.165 0.835 34 H 0.188 0.812 35 H 0.174 0.826 36 H 0.130 0.870 37 H 0.277 0.723 38 H 0.127 0.873 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.191 -23.738 -1.962 25.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.266 6.266 3 C 0.293 3.707 4 O -0.423 6.423 5 C -0.024 4.024 6 N -0.305 5.305 7 C 0.197 3.803 8 O -0.339 6.339 9 S 0.244 5.756 10 C -0.410 4.410 11 C 0.116 3.884 12 C -0.203 4.203 13 C -0.024 4.024 14 C -0.226 4.226 15 C 0.092 3.908 16 O -0.109 6.109 17 C -0.492 4.492 18 H 0.126 0.874 19 C -0.213 4.213 20 N -0.541 5.541 21 Si 0.834 3.166 22 H -0.180 1.180 23 H -0.196 1.196 24 H -0.182 1.182 25 C -0.266 4.266 26 C -0.052 4.052 27 C 0.368 3.632 28 O -0.371 6.371 29 H 0.159 0.841 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.186 0.814 33 H 0.183 0.817 34 H 0.204 0.796 35 H 0.191 0.809 36 H 0.148 0.852 37 H 0.086 0.914 38 H 0.145 0.855 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.225 -22.578 -1.236 24.421 hybrid contribution -0.172 -0.385 0.207 0.469 sum -9.397 -22.963 -1.029 24.832 Atomic orbital electron populations 1.23630 0.74107 1.06216 1.02485 1.86463 1.25414 1.31273 1.83410 1.24144 0.92700 0.82036 0.71801 1.90719 1.67646 1.37632 1.46300 1.21547 0.87867 0.81411 1.11536 1.46067 1.61610 1.14596 1.08184 1.23207 0.78230 0.93485 0.85425 1.90876 1.50537 1.71268 1.21225 1.86819 1.78291 1.09129 1.01335 1.23237 1.24251 0.97374 0.96148 1.22145 0.80276 0.87207 0.98770 1.18696 1.10420 0.94677 0.96527 1.21220 0.92809 0.89484 0.98930 1.20377 1.06842 1.00054 0.95366 1.20279 0.90979 0.85154 0.94347 1.83893 1.62622 1.27569 1.36848 1.21901 1.33365 1.03005 0.90919 0.87388 1.26588 0.96970 0.93814 1.03977 1.70126 1.41162 1.05202 1.37579 0.84682 0.78517 0.78562 0.74821 1.17986 1.19607 1.18160 1.21008 1.09943 0.94013 1.01658 1.21314 0.93265 0.95315 0.95281 1.17443 0.75750 0.87009 0.83027 1.90863 1.49332 1.70814 1.26077 0.84118 0.92157 0.92022 0.81420 0.81734 0.79557 0.80861 0.85174 0.91365 0.85523 0.84505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.35 -5.94 10.57 -51.40 -0.54 -6.49 16 3 C 0.45 9.78 8.02 71.24 0.57 10.35 16 4 O -0.53 -15.68 16.18 21.96 0.36 -15.33 16 5 C 0.10 1.73 5.86 85.63 0.50 2.24 16 6 N -0.56 -13.15 1.97 -779.45 -1.53 -14.68 16 7 C 0.51 13.62 8.39 129.94 1.09 14.72 16 8 O -0.46 -13.77 17.38 -4.14 -0.07 -13.85 16 9 S 0.01 0.15 18.88 -56.49 -1.07 -0.92 16 10 C -0.30 -7.19 6.35 23.93 0.15 -7.04 16 11 C 0.14 3.03 9.83 23.93 0.24 3.27 16 12 C -0.20 -5.43 5.83 -20.14 -0.12 -5.54 16 13 C -0.01 -0.17 9.77 22.46 0.22 0.05 16 14 C -0.21 -7.32 9.95 22.23 0.22 -7.10 16 15 C 0.15 6.42 6.67 22.73 0.15 6.57 16 16 O -0.21 -11.18 9.74 -20.25 -0.20 -11.38 16 17 C -0.42 -22.22 9.48 67.93 0.64 -21.58 16 18 H 0.11 5.25 5.17 -2.91 -0.02 5.23 16 19 C -0.01 -0.70 5.49 84.85 0.47 -0.23 16 20 N -0.91 -51.62 13.67 21.62 0.30 -51.32 16 21 Si 1.02 39.82 29.55 68.60 2.03 41.85 16 22 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 23 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 24 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 25 C -0.25 -9.66 9.12 22.23 0.20 -9.46 16 26 C -0.03 -0.99 8.68 22.46 0.19 -0.80 16 27 C 0.58 14.31 7.61 86.86 0.66 14.97 16 28 O -0.49 -13.15 16.85 -4.36 -0.07 -13.23 16 29 H 0.14 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.81 8.13 -2.38 -0.02 0.79 16 31 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 32 H 0.17 2.02 7.51 -2.39 -0.02 2.00 16 33 H 0.17 1.99 7.69 -2.38 -0.02 1.97 16 34 H 0.19 2.75 8.06 -2.91 -0.02 2.73 16 35 H 0.17 2.89 8.06 -2.91 -0.02 2.86 16 36 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 37 H 0.28 14.51 8.31 -92.71 -0.77 13.74 16 38 H 0.13 5.08 5.60 -2.91 -0.02 5.06 16 39 H 0.14 3.98 4.27 -20.04 -0.09 3.89 16 Total: -1.00 -73.09 364.85 6.65 -66.44 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 1.07 Total: 16.94 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 6.39 Total: 1.97 kcal Atomic # 7 Polarization: -64.77 SS G_CDS: -1.24 Total: -66.01 kcal Atomic # 8 Polarization: -59.74 SS G_CDS: -0.53 Total: -60.27 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Atomic # 16 Polarization: 0.15 SS G_CDS: -1.07 Total: -0.92 kcal Total: -73.09 6.65 -66.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106751201.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.362 kcal (2) G-P(sol) polarization free energy of solvation -73.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds