Wall clock time and date at job start Tue Mar 31 2020 05:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.38522 * 119.99738 * 51.68803 * 3 2 1 5 5 C 1.41190 * 119.99628 * 169.85222 * 4 3 2 6 6 C 1.38235 * 126.87112 * 316.62377 * 5 4 3 7 7 N 1.35577 * 109.43992 * 179.97438 * 6 5 4 8 8 C 1.36882 * 124.73051 * 179.97438 * 7 6 5 9 9 H 1.07993 * 120.00114 * 163.58774 * 8 7 6 10 10 C 1.39102 * 119.99476 * 343.59552 * 8 7 6 11 11 N 1.31259 * 120.00401 * 345.10391 * 10 8 7 12 12 Si 1.86802 * 119.99908 * 165.11488 * 10 8 7 13 13 H 1.48494 * 109.47675 * 89.99121 * 12 10 8 14 14 H 1.48498 * 109.46988 * 209.99884 * 12 10 8 15 15 H 1.48504 * 109.46737 * 329.99243 * 12 10 8 16 16 C 1.38469 * 110.54261 * 0.02562 * 7 6 5 17 17 C 1.39024 * 132.90707 * 180.28910 * 16 7 6 18 18 C 1.37934 * 119.96338 * 180.23197 * 17 16 7 19 19 C 1.38625 * 120.58979 * 359.41982 * 18 17 16 20 20 C 1.37959 * 120.24467 * 0.31471 * 19 18 17 21 21 C 1.39070 * 119.69194 * 359.97438 * 20 19 18 22 22 C 1.46837 * 119.99944 * 231.68224 * 3 2 1 23 23 O 1.21689 * 119.99987 * 173.51616 * 22 3 2 24 24 N 1.34779 * 119.99649 * 353.51269 * 22 3 2 25 25 C 1.46498 * 119.99470 * 180.02562 * 24 22 3 26 26 C 1.53004 * 109.47206 * 274.99770 * 25 24 22 27 27 C 1.53002 * 109.47220 * 180.02562 * 26 25 24 28 28 C 1.53001 * 109.46742 * 60.00273 * 27 26 25 29 29 C 1.52999 * 109.47347 * 299.99723 * 28 27 26 30 30 C 1.53002 * 109.46973 * 60.00418 * 29 28 27 31 31 H 1.07993 * 120.00440 * 349.83688 * 4 3 2 32 32 H 1.08001 * 125.27789 * 0.02562 * 6 5 4 33 33 H 0.96997 * 119.99880 * 180.02562 * 11 10 8 34 34 H 1.07999 * 120.01936 * 359.97438 * 17 16 7 35 35 H 1.07995 * 119.70441 * 179.71574 * 18 17 16 36 36 H 1.08002 * 119.87349 * 180.29429 * 19 18 17 37 37 H 1.08002 * 120.15043 * 179.97438 * 20 19 18 38 38 H 0.97002 * 120.00478 * 0.02562 * 24 22 3 39 39 H 1.09000 * 109.47587 * 35.00352 * 25 24 22 40 40 H 1.08996 * 109.46945 * 300.00453 * 26 25 24 41 41 H 1.09006 * 109.46727 * 60.00586 * 26 25 24 42 42 H 1.09004 * 109.47042 * 300.00524 * 27 26 25 43 43 H 1.08999 * 109.47003 * 179.97438 * 27 26 25 44 44 H 1.09000 * 109.47171 * 180.02562 * 28 27 26 45 45 H 1.08999 * 109.47573 * 60.00114 * 28 27 26 46 46 H 1.09004 * 109.47481 * 300.00388 * 29 28 27 47 47 H 1.09001 * 109.46989 * 180.02562 * 29 28 27 48 48 H 1.08999 * 109.47003 * 180.02562 * 30 29 28 49 49 H 1.08996 * 109.47490 * 60.00156 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2609 -0.7428 -0.9413 5 6 4.6561 -0.5790 -1.0824 6 6 5.3540 0.6142 -1.0968 7 7 6.6770 0.3613 -1.2506 8 6 7.6528 1.3196 -1.3070 9 1 8.6877 1.0456 -1.1650 10 6 7.3112 2.6465 -1.5471 11 7 6.1177 2.9445 -2.0050 12 14 8.5512 4.0044 -1.2182 13 1 9.3543 4.2488 -2.4430 14 1 7.8341 5.2485 -0.8399 15 1 9.4509 3.5952 -0.1098 16 6 6.9036 -1.0015 -1.3438 17 6 8.0578 -1.7606 -1.5000 18 6 7.9741 -3.1358 -1.5672 19 6 6.7472 -3.7735 -1.4683 20 6 5.5920 -3.0367 -1.3075 21 6 5.6631 -1.6493 -1.2443 22 6 3.3018 0.7894 0.9977 23 8 4.5129 0.6987 1.0742 24 7 2.6339 1.6139 1.8288 25 6 3.3662 2.4013 2.8238 26 6 3.5897 1.5558 4.0793 27 6 4.3538 2.3784 5.1187 28 6 3.5421 3.6238 5.4804 29 6 3.3186 4.4694 4.2251 30 6 2.5545 3.6468 3.1856 31 1 2.7340 -1.4477 -1.5671 32 1 4.9136 1.5955 -0.9998 33 1 5.8797 3.8698 -2.1727 34 1 9.0190 -1.2737 -1.5729 35 1 8.8729 -3.7211 -1.6932 36 1 6.6956 -4.8512 -1.5176 37 1 4.6370 -3.5351 -1.2310 38 1 1.6685 1.6860 1.7681 39 1 4.3295 2.7020 2.4120 40 1 2.6263 1.2552 4.4910 41 1 4.1676 0.6683 3.8214 42 1 5.3172 2.6794 4.7071 43 1 4.5126 1.7762 6.0133 44 1 4.0867 4.2101 6.2206 45 1 2.5788 3.3229 5.8921 46 1 4.2820 4.7704 3.8134 47 1 2.7407 5.3569 4.4829 48 1 2.3956 4.2490 2.2911 49 1 1.5911 3.3458 3.5971 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107616160.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:12 Heat of formation + Delta-G solvation = 50.056316 kcal Electronic energy + Delta-G solvation = -32677.192980 eV Core-core repulsion = 28569.143532 eV Total energy + Delta-G solvation = -4108.049448 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.169 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.48384 -39.52996 -37.84093 -36.39484 -36.05152 -34.22941 -33.49938 -32.68834 -30.74760 -30.70069 -29.29152 -28.85832 -27.64469 -25.70071 -23.56854 -22.64270 -22.16107 -21.80244 -20.78451 -20.51368 -19.94516 -18.77460 -18.09202 -17.72040 -16.28131 -15.81369 -15.34293 -14.99320 -14.93562 -14.55673 -14.49124 -14.38610 -13.98109 -13.86926 -13.70042 -13.46343 -13.21703 -13.06043 -12.92847 -12.85006 -12.63292 -12.29704 -12.16918 -12.15868 -12.05696 -11.87551 -11.57394 -11.42953 -11.18560 -11.15822 -11.14198 -10.92766 -10.81843 -10.67750 -10.56584 -10.41305 -10.19246 -10.15763 -9.74967 -9.11617 -8.88762 -8.55285 -8.26455 -7.41989 -7.04216 -6.43586 -4.52447 1.18867 2.04974 2.52384 2.88629 2.93635 2.98626 3.17149 3.30964 3.63876 3.66140 3.89196 4.29085 4.52141 4.58846 4.70222 4.73886 4.77366 4.86616 4.92133 5.16989 5.27663 5.41698 5.46977 5.51111 5.55788 5.57990 5.64049 5.66587 5.75295 5.76052 5.99335 6.01520 6.04636 6.11455 6.12203 6.17487 6.21232 6.24042 6.38695 6.43497 6.49634 6.60731 6.69745 6.86327 6.88944 6.93198 6.97112 6.98557 7.24915 7.31756 7.42698 7.72789 7.84992 8.04763 8.07136 8.21619 8.69279 8.95894 9.09032 10.00280 Molecular weight = 363.17amu Principal moments of inertia in cm(-1) A = 0.007148 B = 0.004154 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3916.322191 B = 6738.157259 C = 8687.619577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C 0.278 3.722 3 C -0.258 4.258 4 C 0.167 3.833 5 C -0.292 4.292 6 C 0.205 3.795 7 N -0.262 5.262 8 C -0.337 4.337 9 H 0.113 0.887 10 C 0.045 3.955 11 N -0.834 5.834 12 Si 0.940 3.060 13 H -0.269 1.269 14 H -0.273 1.273 15 H -0.261 1.261 16 C 0.045 3.955 17 C -0.096 4.096 18 C -0.146 4.146 19 C -0.145 4.145 20 C -0.103 4.103 21 C -0.053 4.053 22 C 0.578 3.422 23 O -0.512 6.512 24 N -0.737 5.737 25 C 0.150 3.850 26 C -0.128 4.128 27 C -0.117 4.117 28 C -0.120 4.120 29 C -0.115 4.115 30 C -0.126 4.126 31 H 0.117 0.883 32 H 0.183 0.817 33 H 0.286 0.714 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.390 0.610 39 H 0.090 0.910 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.066 0.934 47 H 0.063 0.937 48 H 0.068 0.932 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.702 0.597 7.516 7.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.156 5.156 2 C -0.033 4.033 3 C -0.267 4.267 4 C 0.142 3.858 5 C -0.297 4.297 6 C 0.056 3.944 7 N 0.080 4.920 8 C -0.464 4.464 9 H 0.130 0.870 10 C -0.165 4.165 11 N -0.464 5.464 12 Si 0.764 3.236 13 H -0.195 1.195 14 H -0.198 1.198 15 H -0.185 1.185 16 C -0.059 4.059 17 C -0.115 4.115 18 C -0.165 4.165 19 C -0.164 4.164 20 C -0.122 4.122 21 C -0.057 4.057 22 C 0.367 3.633 23 O -0.388 6.388 24 N -0.389 5.389 25 C 0.046 3.954 26 C -0.167 4.167 27 C -0.155 4.155 28 C -0.157 4.157 29 C -0.153 4.153 30 C -0.164 4.164 31 H 0.135 0.865 32 H 0.200 0.800 33 H 0.097 0.903 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.223 0.777 39 H 0.108 0.892 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.081 0.919 48 H 0.087 0.913 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.328 0.942 7.481 7.892 hybrid contribution 0.375 0.737 0.061 0.829 sum -1.953 1.679 7.542 7.970 Atomic orbital electron populations 1.81167 1.12200 1.11889 1.10354 1.25804 0.92591 0.92328 0.92586 1.17644 0.83528 1.19025 1.06472 1.20819 0.92065 0.87478 0.85412 1.17700 0.91591 0.92190 1.28232 1.22936 0.81713 0.98506 0.91278 1.40104 1.06286 1.02956 1.42684 1.19987 0.89956 0.86587 1.49908 0.86970 1.25529 0.97993 0.99093 0.93915 1.69765 1.20245 1.21553 1.34888 0.85695 0.79476 0.78869 0.79553 1.19470 1.19760 1.18530 1.18471 0.95121 0.84170 1.08124 1.20028 0.95798 0.93105 1.02592 1.20489 0.97213 0.93226 1.05568 1.20663 0.92566 0.98468 1.04664 1.20228 0.97650 0.91759 1.02570 1.18857 0.92200 0.92298 1.02323 1.17527 0.87033 0.78647 0.80048 1.90923 1.12610 1.64463 1.70834 1.46023 1.10192 1.45437 1.37209 1.20844 0.96609 0.89956 0.88038 1.21923 1.00419 0.99192 0.95163 1.21496 0.99163 0.96273 0.98575 1.21563 1.00212 0.96655 0.97303 1.21475 1.00719 0.97798 0.95354 1.21802 0.98917 0.96345 0.99381 0.86484 0.79993 0.90323 0.87108 0.87099 0.87285 0.87218 0.77665 0.89215 0.92340 0.91096 0.91622 0.92066 0.92160 0.92163 0.91566 0.91877 0.91347 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -8.54 18.54 41.84 0.78 -7.76 16 2 C 0.28 4.74 14.20 -22.47 -0.32 4.42 16 3 C -0.26 -4.57 5.86 -104.39 -0.61 -5.18 16 4 C 0.17 3.03 9.71 -38.36 -0.37 2.65 16 5 C -0.29 -6.24 4.81 -104.85 -0.50 -6.74 16 6 C 0.20 4.85 6.78 -15.90 -0.11 4.74 16 7 N -0.26 -6.39 2.88 -59.09 -0.17 -6.56 16 8 C -0.34 -8.12 9.89 -14.98 -0.15 -8.27 16 9 H 0.11 2.56 7.79 -52.49 -0.41 2.15 16 10 C 0.05 1.05 5.32 -17.48 -0.09 0.95 16 11 N -0.83 -19.86 10.74 55.50 0.60 -19.26 16 12 Si 0.94 17.75 29.58 -169.99 -5.03 12.72 16 13 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 14 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 15 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 16 C 0.04 1.02 6.72 -83.80 -0.56 0.46 16 17 C -0.10 -1.89 9.91 -39.40 -0.39 -2.28 16 18 C -0.15 -2.50 10.02 -39.55 -0.40 -2.89 16 19 C -0.14 -2.42 10.04 -39.54 -0.40 -2.81 16 20 C -0.10 -1.89 10.09 -39.38 -0.40 -2.29 16 21 C -0.05 -1.13 6.33 -104.89 -0.66 -1.79 16 22 C 0.58 10.78 7.17 -12.78 -0.09 10.69 16 23 O -0.51 -11.28 11.85 5.20 0.06 -11.22 16 24 N -0.74 -11.43 5.03 -55.06 -0.28 -11.71 16 25 C 0.15 2.13 2.46 -67.93 -0.17 1.96 16 26 C -0.13 -1.70 5.49 -26.73 -0.15 -1.84 16 27 C -0.12 -1.32 5.92 -26.73 -0.16 -1.48 16 28 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 29 C -0.12 -1.17 5.92 -26.73 -0.16 -1.33 16 30 C -0.13 -1.44 5.39 -26.73 -0.14 -1.58 16 31 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 32 H 0.18 4.53 5.58 -52.49 -0.29 4.24 16 33 H 0.29 6.29 8.30 -40.82 -0.34 5.95 16 34 H 0.11 2.04 7.98 -52.49 -0.42 1.62 16 35 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 38 H 0.39 5.53 7.49 -40.82 -0.31 5.22 16 39 H 0.09 1.51 7.58 -51.93 -0.39 1.12 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 49 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 406.25 15.07 6.12 6.12 Total: -1.00 -26.59 406.25 -10.78 -37.37 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -6.87 Total: 14.21 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -5.99 Total: -13.92 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 0.92 Total: -45.29 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.06 Total: -11.22 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.03 Total: 12.72 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -26.59 -10.78 -37.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107616160.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.430 kcal (2) G-P(sol) polarization free energy of solvation -26.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds