Wall clock time and date at job start Tue Mar 31 2020 05:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.64202 * 2 1 4 4 C 1.55157 * 110.87088 * 123.25014 * 2 1 3 5 5 C 1.54908 * 101.58316 * 82.93461 * 4 2 1 6 6 N 1.47421 * 104.83341 * 37.00535 * 5 4 2 7 7 S 1.65600 * 125.65088 * 155.91041 * 6 5 4 8 8 O 1.42109 * 106.39967 * 23.49764 * 7 6 5 9 9 O 1.42094 * 106.40485 * 156.41611 * 7 6 5 10 10 C 1.76196 * 107.21879 * 269.95865 * 7 6 5 11 11 H 1.08003 * 120.00130 * 0.02562 * 10 7 6 12 12 C 1.37878 * 120.00265 * 179.97438 * 10 7 6 13 13 N 1.31514 * 119.99805 * 0.02562 * 12 10 7 14 14 Si 1.86795 * 120.00208 * 179.97438 * 12 10 7 15 15 H 1.48496 * 109.47134 * 60.00308 * 14 12 10 16 16 H 1.48501 * 109.47227 * 180.02562 * 14 12 10 17 17 H 1.48509 * 109.47294 * 300.00580 * 14 12 10 18 18 C 1.47023 * 108.70375 * 335.87473 * 6 5 4 19 19 H 1.08998 * 110.01308 * 120.55044 * 18 6 5 20 20 C 1.50701 * 109.88254 * 241.64021 * 18 6 5 21 21 C 1.38235 * 120.00091 * 37.53753 * 20 18 6 22 22 C 1.38240 * 120.00350 * 179.76609 * 21 20 18 23 23 C 1.38229 * 119.99631 * 0.47928 * 22 21 20 24 24 C 1.50701 * 120.00018 * 179.76612 * 23 22 21 25 25 F 1.39888 * 109.47570 * 270.02522 * 24 23 22 26 26 F 1.39899 * 109.46931 * 30.03007 * 24 23 22 27 27 F 1.39905 * 109.46902 * 150.02249 * 24 23 22 28 28 C 1.38239 * 119.99926 * 359.79461 * 23 22 21 29 29 C 1.38231 * 120.00292 * 359.95318 * 28 23 22 30 30 H 1.09006 * 109.47176 * 180.70018 * 1 2 3 31 31 H 1.09005 * 109.47062 * 300.69701 * 1 2 3 32 32 H 1.08998 * 109.47130 * 60.69940 * 1 2 3 33 33 H 1.09006 * 111.00140 * 201.00588 * 4 2 1 34 34 H 1.08999 * 111.00519 * 324.85405 * 4 2 1 35 35 H 1.09008 * 110.36224 * 278.16819 * 5 4 2 36 36 H 1.08995 * 110.46320 * 155.89688 * 5 4 2 37 37 H 0.97000 * 119.99893 * 179.97438 * 13 12 10 38 38 H 1.08005 * 119.99838 * 359.97438 * 21 20 18 39 39 H 1.07991 * 120.00020 * 180.25204 * 22 21 20 40 40 H 1.08009 * 119.99698 * 179.97438 * 28 23 22 41 41 H 1.08000 * 120.00141 * 179.97438 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0828 -0.7949 1.2124 5 6 2.0192 -2.2502 0.6853 6 7 2.3756 -2.1506 -0.7417 7 16 3.0079 -3.3706 -1.6659 8 8 2.6292 -4.5876 -1.0375 9 8 2.6868 -3.0598 -3.0148 10 6 4.7620 -3.2682 -1.5357 11 1 5.2144 -2.4988 -0.9275 12 6 5.5573 -4.1708 -2.2094 13 7 5.0065 -5.1080 -2.9496 14 14 7.4169 -4.0617 -2.0719 15 1 7.8184 -4.2206 -0.6511 16 1 8.0374 -5.1381 -2.8854 17 1 7.8735 -2.7394 -2.5704 18 6 2.0760 -0.7891 -1.2086 19 1 2.9835 -0.3146 -1.5818 20 6 1.0378 -0.8384 -2.2999 21 6 0.0027 -1.7518 -2.2284 22 6 -0.9524 -1.7938 -3.2269 23 6 -0.8668 -0.9290 -4.3019 24 6 -1.9049 -0.9783 -5.3932 25 9 -1.4979 -1.8782 -6.3838 26 9 -3.1267 -1.3975 -4.8558 27 9 -2.0541 0.2953 -5.9528 28 6 0.1716 -0.0194 -4.3763 29 6 1.1237 0.0261 -3.3751 30 1 -0.3634 -1.0276 0.0126 31 1 -0.3633 0.5246 0.8837 32 1 -0.3633 0.5029 -0.8962 33 1 3.1096 -0.5044 1.4347 34 1 1.4445 -0.6677 2.0868 35 1 1.0115 -2.6506 0.7977 36 1 2.7371 -2.8782 1.2128 37 1 5.5659 -5.7428 -3.4238 38 1 -0.0618 -2.4304 -1.3906 39 1 -1.7633 -2.5046 -3.1690 40 1 0.2387 0.6559 -5.2165 41 1 1.9351 0.7364 -3.4335 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108134542.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:15 Heat of formation + Delta-G solvation = -212.524635 kcal Electronic energy + Delta-G solvation = -32061.101276 eV Core-core repulsion = 27231.293735 eV Total energy + Delta-G solvation = -4829.807541 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.090 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.07655 -47.61584 -47.51404 -40.13557 -37.89378 -35.27764 -33.98802 -33.14015 -32.43067 -31.83923 -30.95633 -28.72684 -26.55878 -26.15925 -25.15504 -22.72666 -22.31580 -21.17847 -19.69917 -18.77079 -18.41162 -18.33464 -18.27592 -17.52909 -16.44356 -15.91627 -15.25923 -15.01897 -14.85236 -14.67768 -14.38080 -14.27853 -14.12471 -14.01992 -13.96199 -13.76994 -13.72988 -13.70404 -13.29483 -13.26892 -12.84568 -12.56739 -12.31398 -12.06714 -12.01368 -11.91203 -11.50682 -11.28628 -11.23495 -11.10215 -10.74094 -10.65868 -10.60582 -10.52167 -10.32270 -10.30843 -10.20128 -9.27614 -9.00302 -8.82195 -8.77665 -8.26273 -6.73323 -5.36417 1.11674 1.50174 2.16364 2.76773 3.05040 3.09890 3.14821 3.63995 3.83750 4.02142 4.12645 4.48235 4.55124 4.56787 4.64054 4.73638 4.92631 4.98871 5.01231 5.20125 5.42072 5.46621 5.50658 5.54571 5.66781 5.73728 5.76220 5.85625 5.94803 6.02812 6.05859 6.06727 6.16349 6.22565 6.24395 6.33057 6.38260 6.41800 6.60872 6.89066 6.96358 7.29051 7.39425 7.92423 8.84873 10.20259 Molecular weight = 363.09amu Principal moments of inertia in cm(-1) A = 0.011723 B = 0.003902 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.993443 B = 7174.054426 C = 8499.844599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 H 0.086 0.914 4 C -0.126 4.126 5 C 0.123 3.877 6 N -1.014 6.014 7 S 2.721 3.279 8 O -1.002 7.002 9 O -0.988 6.988 10 C -1.023 5.023 11 H 0.101 0.899 12 C 0.133 3.867 13 N -0.845 5.845 14 Si 0.919 3.081 15 H -0.264 1.264 16 H -0.275 1.275 17 H -0.264 1.264 18 C 0.191 3.809 19 H 0.086 0.914 20 C -0.035 4.035 21 C -0.101 4.101 22 C -0.070 4.070 23 C -0.192 4.192 24 C 0.510 3.490 25 F -0.176 7.176 26 F -0.181 7.181 27 F -0.182 7.182 28 C -0.069 4.069 29 C -0.107 4.107 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.292 0.708 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.620 12.577 3.500 16.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 H 0.105 0.895 4 C -0.165 4.165 5 C -0.003 4.003 6 N -0.847 5.847 7 S 2.823 3.177 8 O -0.992 6.992 9 O -0.978 6.978 10 C -1.156 5.156 11 H 0.119 0.881 12 C -0.085 4.085 13 N -0.475 5.475 14 Si 0.743 3.257 15 H -0.188 1.188 16 H -0.200 1.200 17 H -0.188 1.188 18 C 0.083 3.917 19 H 0.104 0.896 20 C -0.037 4.037 21 C -0.119 4.119 22 C -0.088 4.088 23 C -0.194 4.194 24 C 0.456 3.544 25 F -0.158 7.158 26 F -0.162 7.162 27 F -0.163 7.163 28 C -0.087 4.087 29 C -0.126 4.126 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.141 11.700 2.810 15.736 hybrid contribution 1.456 0.074 -0.080 1.460 sum -8.685 11.774 2.731 14.883 Atomic orbital electron populations 1.21991 0.94404 1.02478 1.01579 1.22174 0.96288 0.98924 0.93688 0.89535 1.22870 1.01681 0.94958 0.96990 1.21827 1.00231 0.96726 0.81531 1.59410 1.80192 1.24496 1.20646 1.00401 0.75745 0.70080 0.71470 1.93367 1.85600 1.42802 1.77449 1.93397 1.86362 1.83669 1.34370 1.30597 1.17753 1.25127 1.42157 0.88088 1.24748 1.01868 0.91567 0.90315 1.69883 1.38883 1.14151 1.24546 0.86217 0.81275 0.78898 0.79297 1.18820 1.20033 1.18814 1.20186 0.95215 0.84344 0.91911 0.89598 1.20384 0.94583 0.93705 0.94993 1.20941 0.93811 0.98423 0.98755 1.20808 0.98983 0.96602 0.92406 1.19811 0.98713 1.03970 0.96881 1.18366 0.80767 0.73433 0.81874 1.93233 1.90317 1.68202 1.64017 1.93164 1.46884 1.90215 1.85979 1.93161 1.96020 1.40345 1.86774 1.20772 0.92653 0.96628 0.98635 1.20873 0.98673 0.99831 0.93194 0.91868 0.92684 0.92181 0.90462 0.90348 0.92362 0.90531 0.89776 0.85285 0.85114 0.85078 0.84915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 7.75 37.16 0.29 -1.24 16 2 C -0.09 -1.03 3.54 -88.79 -0.31 -1.34 16 3 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 4 C -0.13 -1.42 6.58 -24.58 -0.16 -1.58 16 5 C 0.12 1.88 6.67 -2.53 -0.02 1.86 16 6 N -1.01 -19.24 2.59 -105.64 -0.27 -19.51 16 7 S 2.72 70.57 5.06 -107.50 -0.54 70.02 16 8 O -1.00 -28.93 17.60 -57.17 -1.01 -29.94 16 9 O -0.99 -27.68 16.02 -57.17 -0.92 -28.59 16 10 C -1.02 -27.82 9.75 30.60 0.30 -27.52 16 11 H 0.10 2.50 7.81 -52.48 -0.41 2.09 16 12 C 0.13 3.69 5.46 -17.82 -0.10 3.59 16 13 N -0.85 -24.80 13.19 55.43 0.73 -24.07 16 14 Si 0.92 20.37 29.54 -169.99 -5.02 15.35 16 15 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 16 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 17 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 18 C 0.19 2.97 3.22 -68.10 -0.22 2.75 16 19 H 0.09 1.31 8.03 -51.93 -0.42 0.89 16 20 C -0.03 -0.56 2.21 -104.62 -0.23 -0.79 16 21 C -0.10 -1.65 6.74 -39.58 -0.27 -1.91 16 22 C -0.07 -1.07 9.40 -39.58 -0.37 -1.44 16 23 C -0.19 -2.86 5.45 -104.62 -0.57 -3.43 16 24 C 0.51 7.10 3.36 36.01 0.12 7.22 16 25 F -0.18 -2.70 17.30 2.25 0.04 -2.66 16 26 F -0.18 -2.43 16.46 2.25 0.04 -2.39 16 27 F -0.18 -2.36 16.46 2.25 0.04 -2.32 16 28 C -0.07 -0.97 9.40 -39.58 -0.37 -1.34 16 29 C -0.11 -1.56 9.68 -39.59 -0.38 -1.94 16 30 H 0.06 0.71 5.66 -51.93 -0.29 0.41 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.64 7.02 -51.93 -0.36 0.27 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.70 8.04 -51.93 -0.42 0.28 16 35 H 0.06 0.82 7.74 -51.92 -0.40 0.42 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.29 7.73 8.31 -40.82 -0.34 7.39 16 38 H 0.13 2.07 6.92 -52.48 -0.36 1.70 16 39 H 0.13 1.75 7.60 -52.49 -0.40 1.35 16 40 H 0.13 1.53 7.60 -52.48 -0.40 1.13 16 41 H 0.13 1.58 8.05 -52.49 -0.42 1.16 16 LS Contribution 360.14 15.07 5.43 5.43 Total: -1.00 -34.45 360.14 -8.50 -42.96 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -4.72 Total: 2.85 kcal Atomic # 6 Polarization: -24.82 SS G_CDS: -2.30 Total: -27.11 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 0.46 Total: -43.58 kcal Atomic # 8 Polarization: -56.61 SS G_CDS: -1.92 Total: -58.53 kcal Atomic # 9 Polarization: -7.49 SS G_CDS: 0.11 Total: -7.38 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 70.57 SS G_CDS: -0.54 Total: 70.02 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.45 -8.50 -42.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108134542.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.567 kcal (2) G-P(sol) polarization free energy of solvation -34.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds