Wall clock time and date at job start Tue Mar 31 2020 05:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.78259 * 2 1 4 4 C 1.55160 * 110.71940 * 236.75887 * 2 1 3 5 5 C 1.54909 * 101.58422 * 206.13425 * 4 2 1 6 6 N 1.47419 * 104.83089 * 37.01221 * 5 4 2 7 7 S 1.65604 * 125.64961 * 155.89374 * 6 5 4 8 8 O 1.42098 * 106.39911 * 23.51043 * 7 6 5 9 9 O 1.42102 * 106.40370 * 156.43683 * 7 6 5 10 10 C 1.76203 * 107.21545 * 269.97361 * 7 6 5 11 11 H 1.08003 * 119.99992 * 0.02562 * 10 7 6 12 12 C 1.37879 * 120.00035 * 180.02562 * 10 7 6 13 13 N 1.31507 * 120.00062 * 180.02562 * 12 10 7 14 14 Si 1.86802 * 119.99751 * 359.97438 * 12 10 7 15 15 H 1.48508 * 109.46942 * 90.00410 * 14 12 10 16 16 H 1.48493 * 109.47248 * 210.00154 * 14 12 10 17 17 H 1.48495 * 109.47199 * 330.00626 * 14 12 10 18 18 C 1.47020 * 108.70477 * 335.87107 * 6 5 4 19 19 H 1.08996 * 110.01721 * 120.55014 * 18 6 5 20 20 C 1.50706 * 109.88120 * 241.64351 * 18 6 5 21 21 C 1.38228 * 119.99983 * 38.02028 * 20 18 6 22 22 C 1.38238 * 120.00110 * 180.21781 * 21 20 18 23 23 C 1.38234 * 119.99675 * 359.52133 * 22 21 20 24 24 C 1.50702 * 120.00257 * 180.25732 * 23 22 21 25 25 F 1.39902 * 109.46957 * 90.00122 * 24 23 22 26 26 F 1.39899 * 109.47593 * 210.00347 * 24 23 22 27 27 F 1.39906 * 109.47101 * 330.00925 * 24 23 22 28 28 C 1.38235 * 120.00220 * 0.28720 * 23 22 21 29 29 C 1.38234 * 119.99892 * 217.80248 * 20 18 6 30 30 H 1.09000 * 109.46629 * 296.76164 * 1 2 3 31 31 H 1.08992 * 109.47059 * 56.75764 * 1 2 3 32 32 H 1.09002 * 109.47343 * 176.76203 * 1 2 3 33 33 H 1.09000 * 111.00648 * 324.21121 * 4 2 1 34 34 H 1.08999 * 111.00094 * 88.05819 * 4 2 1 35 35 H 1.08999 * 110.36289 * 155.84747 * 5 4 2 36 36 H 1.08998 * 110.36510 * 278.06166 * 5 4 2 37 37 H 0.97008 * 120.00005 * 180.02562 * 13 12 10 38 38 H 1.08004 * 120.00281 * 0.02562 * 21 20 18 39 39 H 1.08002 * 120.00519 * 179.80752 * 22 21 20 40 40 H 1.07996 * 120.00471 * 179.97438 * 28 23 22 41 41 H 1.08001 * 120.00324 * 0.02562 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0789 -0.7955 -1.2138 5 6 3.4633 -1.2499 -0.6876 6 7 3.2445 -1.5508 0.7389 7 16 4.1632 -2.5744 1.6613 8 8 5.4354 -2.6480 1.0327 9 8 3.9853 -2.1671 3.0110 10 6 3.4487 -4.1796 1.5278 11 1 2.5693 -4.3303 0.9192 12 6 4.0123 -5.2431 2.2003 13 7 3.4794 -6.4412 2.1003 14 14 5.5338 -4.9824 3.2523 15 1 5.1245 -4.6434 4.6390 16 1 6.3453 -6.2259 3.2658 17 1 6.3408 -3.8707 2.6886 18 6 2.0761 -0.7913 1.2072 19 1 1.3121 -1.4738 1.5792 20 6 2.4883 0.1610 2.3001 21 6 3.7035 0.8154 2.2246 22 6 4.0836 1.6855 3.2293 23 6 3.2441 1.9087 4.3045 24 6 3.6558 2.8617 5.3970 25 9 3.2123 4.1508 5.0829 26 9 3.0874 2.4554 6.6090 27 9 5.0500 2.8637 5.5131 28 6 2.0270 1.2574 4.3781 29 6 1.6491 0.3836 3.3758 30 1 -0.3632 0.4627 0.9176 31 1 -0.3633 0.5633 -0.8594 32 1 -0.3634 -1.0260 -0.0580 33 1 1.4451 -1.6536 -1.4375 34 1 2.1849 -0.1519 -2.0871 35 1 3.7959 -2.1427 -1.2170 36 1 4.1936 -0.4486 -0.8004 37 1 3.8757 -7.1894 2.5738 38 1 4.3575 0.6445 1.3822 39 1 5.0345 2.1944 3.1719 40 1 1.3712 1.4314 5.2183 41 1 0.6982 -0.1253 3.4333 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108134547.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:19 Heat of formation + Delta-G solvation = -202.970646 kcal Electronic energy + Delta-G solvation = -31922.201794 eV Core-core repulsion = 27092.808545 eV Total energy + Delta-G solvation = -4829.393249 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.090 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.14849 -47.65457 -47.62380 -39.99293 -37.99820 -35.70301 -34.47709 -33.09001 -32.46099 -32.33660 -30.96735 -29.00513 -26.67310 -26.43574 -24.72568 -22.92551 -22.22252 -21.33306 -20.13970 -18.79399 -18.50228 -18.43752 -18.30917 -17.61420 -16.76563 -16.29271 -15.37253 -15.19609 -14.90372 -14.70841 -14.48587 -14.30589 -14.07353 -13.99738 -13.89487 -13.82960 -13.77681 -13.53329 -13.42648 -13.31386 -13.09788 -12.85430 -12.69773 -12.60452 -12.29054 -11.85810 -11.64710 -11.45108 -11.29327 -11.13855 -10.88784 -10.81589 -10.75398 -10.66824 -10.55614 -10.49578 -9.89264 -9.25436 -9.21623 -8.93458 -8.90037 -8.35293 -6.85170 -5.39192 1.01377 1.40196 1.89534 2.68860 3.03215 3.14116 3.22689 3.53803 3.75578 3.90976 4.05632 4.14635 4.44946 4.48287 4.58747 4.63222 4.81296 4.90801 4.92526 5.05156 5.32089 5.37743 5.42448 5.45378 5.48692 5.56922 5.63123 5.74529 5.85032 5.87062 5.95256 5.98951 6.04099 6.05703 6.16216 6.23904 6.28856 6.37695 6.45427 6.75062 6.86814 7.12565 7.44013 8.16154 8.65737 10.27183 Molecular weight = 363.09amu Principal moments of inertia in cm(-1) A = 0.010311 B = 0.004338 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.989348 B = 6453.692051 C = 8082.169633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.085 0.915 4 C -0.126 4.126 5 C 0.122 3.878 6 N -1.005 6.005 7 S 2.684 3.316 8 O -1.004 7.004 9 O -0.994 6.994 10 C -1.017 5.017 11 H 0.121 0.879 12 C 0.154 3.846 13 N -0.822 5.822 14 Si 0.798 3.202 15 H -0.245 1.245 16 H -0.254 1.254 17 H -0.221 1.221 18 C 0.192 3.808 19 H 0.090 0.910 20 C -0.042 4.042 21 C -0.107 4.107 22 C -0.068 4.068 23 C -0.192 4.192 24 C 0.510 3.490 25 F -0.181 7.181 26 F -0.179 7.179 27 F -0.179 7.179 28 C -0.068 4.068 29 C -0.104 4.104 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.281 0.719 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.606 16.547 -1.872 17.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 H 0.103 0.897 4 C -0.165 4.165 5 C -0.003 4.003 6 N -0.839 5.839 7 S 2.788 3.212 8 O -0.994 6.994 9 O -0.985 6.985 10 C -1.152 5.152 11 H 0.139 0.861 12 C -0.065 4.065 13 N -0.451 5.451 14 Si 0.618 3.382 15 H -0.168 1.168 16 H -0.178 1.178 17 H -0.143 1.143 18 C 0.084 3.916 19 H 0.108 0.892 20 C -0.043 4.043 21 C -0.125 4.125 22 C -0.086 4.086 23 C -0.194 4.194 24 C 0.456 3.544 25 F -0.162 7.162 26 F -0.160 7.160 27 F -0.160 7.160 28 C -0.086 4.086 29 C -0.122 4.122 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.770 16.579 -1.281 17.299 hybrid contribution 0.344 -0.607 0.579 0.907 sum -4.425 15.972 -0.702 16.588 Atomic orbital electron populations 1.21783 0.93862 1.02495 1.01961 1.22265 0.96181 0.99232 0.93479 0.89698 1.22908 0.96518 1.00122 0.96977 1.21875 0.96654 1.00814 0.81005 1.58845 1.43957 1.60324 1.20809 1.01263 0.72691 0.75107 0.72183 1.93466 1.40574 1.88122 1.77249 1.93441 1.86398 1.83977 1.34647 1.30530 1.27867 1.13832 1.42926 0.86135 1.24407 0.95533 0.94104 0.92493 1.69981 1.38282 1.00019 1.36831 0.87914 0.83862 0.82705 0.83721 1.16842 1.17762 1.14273 1.20262 0.88226 0.91083 0.91990 0.89209 1.20478 0.94046 0.94568 0.95251 1.20933 0.96464 0.96163 0.98972 1.20826 0.98377 0.97093 0.92302 1.19843 0.99239 1.03206 0.97090 1.18354 0.74655 0.79692 0.81717 1.93202 1.89258 1.40937 1.92845 1.93179 1.84790 1.90356 1.47668 1.93185 1.29950 1.96552 1.96301 1.20807 0.94369 0.94864 0.98546 1.20909 1.00335 0.97983 0.93008 0.92293 0.92202 0.91930 0.90183 0.90269 0.90242 0.92102 0.90852 0.85247 0.85032 0.84926 0.84741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.14 37.16 0.34 -0.96 16 2 C -0.09 -1.02 3.06 -88.78 -0.27 -1.29 16 3 H 0.08 0.87 7.82 -51.93 -0.41 0.47 16 4 C -0.13 -1.40 6.53 -24.58 -0.16 -1.56 16 5 C 0.12 1.81 6.98 -2.53 -0.02 1.79 16 6 N -1.01 -18.55 2.61 -105.64 -0.28 -18.82 16 7 S 2.68 65.99 4.30 -107.50 -0.46 65.52 16 8 O -1.00 -26.65 15.61 -57.17 -0.89 -27.54 16 9 O -0.99 -25.71 14.86 -57.17 -0.85 -26.56 16 10 C -1.02 -28.16 10.29 30.60 0.31 -27.84 16 11 H 0.12 3.36 8.06 -52.48 -0.42 2.94 16 12 C 0.15 4.42 5.47 -17.82 -0.10 4.32 16 13 N -0.82 -23.61 13.96 55.43 0.77 -22.84 16 14 Si 0.80 20.63 26.54 -169.99 -4.51 16.12 16 15 H -0.24 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.25 -6.01 7.11 56.52 0.40 -5.61 16 17 H -0.22 -5.82 5.61 56.52 0.32 -5.50 16 18 C 0.19 2.92 2.86 -68.10 -0.20 2.72 16 19 H 0.09 1.37 7.71 -51.93 -0.40 0.97 16 20 C -0.04 -0.65 3.43 -104.62 -0.36 -1.01 16 21 C -0.11 -1.67 8.87 -39.59 -0.35 -2.02 16 22 C -0.07 -0.99 9.40 -39.58 -0.37 -1.36 16 23 C -0.19 -2.73 5.45 -104.62 -0.57 -3.30 16 24 C 0.51 6.78 3.36 36.01 0.12 6.90 16 25 F -0.18 -2.28 17.30 2.25 0.04 -2.24 16 26 F -0.18 -2.40 16.46 2.25 0.04 -2.36 16 27 F -0.18 -2.47 16.46 2.25 0.04 -2.43 16 28 C -0.07 -0.91 9.40 -39.58 -0.37 -1.28 16 29 C -0.10 -1.45 9.68 -39.58 -0.38 -1.83 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 33 H 0.08 0.89 8.02 -51.93 -0.42 0.47 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.13 1.93 7.67 -52.48 -0.40 1.53 16 39 H 0.13 1.64 7.60 -52.49 -0.40 1.24 16 40 H 0.13 1.46 7.60 -52.49 -0.40 1.06 16 41 H 0.13 1.54 8.05 -52.49 -0.42 1.12 16 LS Contribution 361.49 15.07 5.45 5.45 Total: -1.00 -32.78 361.49 -8.05 -40.83 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -5.02 Total: 1.60 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: -2.37 Total: -26.72 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 0.50 Total: -41.67 kcal Atomic # 8 Polarization: -52.36 SS G_CDS: -1.74 Total: -54.11 kcal Atomic # 9 Polarization: -7.15 SS G_CDS: 0.11 Total: -7.03 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.51 Total: 16.12 kcal Atomic # 16 Polarization: 65.99 SS G_CDS: -0.46 Total: 65.52 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.78 -8.05 -40.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108134547.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.140 kcal (2) G-P(sol) polarization free energy of solvation -32.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds