Wall clock time and date at job start Tue Mar 31 2020 06:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 120.00368 * 2 1 4 4 H 1.48500 * 109.47343 * 239.99955 * 3 2 1 5 5 H 1.48507 * 109.47036 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47671 * 119.99751 * 3 2 1 7 7 C 1.37880 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.07988 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99556 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47133 * 180.02562 * 9 7 2 11 11 C 1.34776 * 120.00063 * 269.99722 * 10 9 7 12 12 O 1.21284 * 119.99885 * 4.49785 * 11 10 9 13 13 C 1.50695 * 120.00116 * 184.49406 * 11 10 9 14 14 N 1.46500 * 109.47270 * 174.77846 * 13 11 10 15 15 N 1.40081 * 126.03852 * 269.69131 * 14 13 11 16 16 C 1.30840 * 108.20390 * 179.85141 * 15 14 13 17 17 C 1.39866 * 108.20445 * 0.40713 * 16 15 14 18 18 C 1.34952 * 126.03454 * 90.00380 * 14 13 11 19 19 N 1.48022 * 126.12835 * 359.97438 * 18 14 13 20 20 O 1.21804 * 120.00171 * 0.02562 * 19 18 14 21 21 O 1.21796 * 120.00246 * 179.97438 * 19 18 14 22 22 C 1.39927 * 120.00039 * 90.00301 * 10 9 7 23 23 C 1.38902 * 120.06637 * 66.06816 * 22 10 9 24 24 C 1.38094 * 119.95354 * 179.74993 * 23 22 10 25 25 C 1.38290 * 120.08626 * 0.53031 * 24 23 22 26 26 C 1.38378 * 120.12571 * 359.74599 * 25 24 23 27 27 Cl 1.73601 * 119.97991 * 179.97438 * 26 25 24 28 28 C 1.38261 * 120.04341 * 359.97438 * 26 25 24 29 29 H 0.97002 * 120.00127 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.46857 * 300.00048 * 9 7 2 31 31 H 1.09000 * 109.47466 * 59.99753 * 9 7 2 32 32 H 1.09001 * 109.47342 * 294.78426 * 13 11 10 33 33 H 1.09000 * 109.47072 * 54.78107 * 13 11 10 34 34 H 1.08000 * 125.89528 * 180.11981 * 16 15 14 35 35 H 1.07996 * 126.04504 * 179.71411 * 17 16 15 36 36 H 1.08002 * 120.02228 * 0.02562 * 23 22 10 37 37 H 1.08001 * 119.96229 * 180.27965 * 24 23 22 38 38 H 1.07996 * 119.94035 * 179.72387 * 25 24 23 39 39 H 1.08000 * 120.03850 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0018 11 6 2.6417 -4.1255 -1.1648 12 8 2.3128 -3.6136 -2.2141 13 6 3.5409 -5.3347 -1.1656 14 7 3.7747 -5.7686 -2.5452 15 7 3.0021 -6.6922 -3.2609 16 6 3.5188 -6.8183 -4.4562 17 6 4.6409 -5.9873 -4.5371 18 6 4.7760 -5.3534 -3.3492 19 7 5.8325 -4.3790 -2.9951 20 8 5.8482 -3.8734 -1.8870 21 8 6.6868 -4.0835 -3.8113 22 6 2.6566 -4.1440 1.2142 23 6 1.7724 -4.8011 2.0602 24 6 2.2237 -5.3291 3.2538 25 6 3.5524 -5.1948 3.6128 26 6 4.4350 -4.5359 2.7753 27 17 6.1021 -4.3689 3.2301 28 6 3.9901 -4.0102 1.5763 29 1 -0.4850 0.8401 -0.0004 30 1 0.6240 -2.5566 0.8903 31 1 0.6246 -2.5571 -0.8896 32 1 4.4924 -5.0803 -0.6985 33 1 3.0660 -6.1411 -0.6068 34 1 3.1462 -7.4575 -5.2430 35 1 5.2859 -5.8721 -5.3956 36 1 0.7336 -4.9030 1.7827 37 1 1.5373 -5.8440 3.9096 38 1 3.9018 -5.6048 4.5489 39 1 4.6791 -3.4963 0.9225 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119734543.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:40 Heat of formation + Delta-G solvation = 86.355871 kcal Electronic energy + Delta-G solvation = -30640.482274 eV Core-core repulsion = 26194.481944 eV Total energy + Delta-G solvation = -4446.000330 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 364.077 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.67181 -41.41074 -40.21918 -38.53553 -36.80494 -36.51164 -35.11770 -33.77742 -32.76357 -31.56123 -30.82123 -29.70619 -28.68944 -26.92915 -26.45293 -23.38868 -22.98550 -22.43895 -21.92081 -21.68176 -19.81874 -18.88716 -18.71038 -18.05363 -17.45200 -16.77867 -16.54581 -16.28507 -15.56820 -15.49579 -15.21227 -14.94377 -14.70591 -14.45782 -14.16469 -13.79123 -13.68973 -13.47168 -13.18270 -12.75364 -12.22473 -11.87097 -11.85454 -11.65325 -11.57805 -11.53754 -11.37086 -11.30259 -11.16817 -11.06398 -10.90895 -10.70630 -10.41750 -10.27205 -9.93346 -9.89408 -9.33159 -8.90022 -8.75577 -8.52822 -7.99737 -6.15543 -4.20467 -0.18493 0.69147 1.11656 1.21547 1.47920 1.91570 2.10908 2.17726 2.79551 3.29984 3.33058 3.34821 3.42844 3.59499 3.95968 4.37581 4.39108 4.43926 4.74123 4.81682 4.87464 4.93405 5.02382 5.18809 5.20365 5.21780 5.38171 5.52294 5.63828 5.78112 5.88967 6.15287 6.27820 6.29050 6.41516 6.55171 6.83101 6.86745 7.06945 7.21065 7.46817 7.79234 7.93198 8.03843 8.44163 8.82184 9.44942 10.92938 Molecular weight = 364.08amu Principal moments of inertia in cm(-1) A = 0.006450 B = 0.004805 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4340.369996 B = 5825.587809 C = 7681.203271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.065 3.935 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.530 4.530 8 H 0.061 0.939 9 C 0.250 3.750 10 N -0.549 5.549 11 C 0.507 3.493 12 O -0.507 6.507 13 C 0.093 3.907 14 N -0.315 5.315 15 N -0.215 5.215 16 C 0.049 3.951 17 C -0.168 4.168 18 C 0.131 3.869 19 N 0.051 4.949 20 O -0.149 6.149 21 O -0.123 6.123 22 C 0.163 3.837 23 C -0.116 4.116 24 C -0.095 4.095 25 C -0.120 4.120 26 C -0.021 4.021 27 Cl -0.071 7.071 28 C -0.120 4.120 29 H 0.266 0.734 30 H 0.041 0.959 31 H 0.048 0.952 32 H 0.139 0.861 33 H 0.131 0.869 34 H 0.210 0.790 35 H 0.178 0.822 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.003 -17.311 1.124 19.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.137 4.137 3 Si 0.726 3.274 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.569 4.569 8 H 0.079 0.921 9 C 0.134 3.866 10 N -0.277 5.277 11 C 0.292 3.708 12 O -0.381 6.381 13 C -0.032 4.032 14 N -0.101 5.101 15 N -0.042 5.042 16 C -0.135 4.135 17 C -0.200 4.200 18 C -0.077 4.077 19 N 0.574 4.426 20 O -0.363 6.363 21 O -0.341 6.341 22 C 0.070 3.930 23 C -0.136 4.136 24 C -0.114 4.114 25 C -0.139 4.139 26 C -0.048 4.048 27 Cl -0.042 7.042 28 C -0.140 4.140 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.156 0.844 33 H 0.149 0.851 34 H 0.226 0.774 35 H 0.196 0.804 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.150 0.850 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.344 -17.594 1.334 18.751 hybrid contribution 1.381 1.727 -0.253 2.225 sum 7.725 -15.868 1.081 17.681 Atomic orbital electron populations 1.69904 1.06010 1.27424 1.49910 1.24888 0.94897 0.99284 0.94669 0.86532 0.79569 0.82351 0.78952 1.20018 1.21054 1.19935 1.21293 0.93518 0.90174 1.51906 0.92120 1.19556 0.86717 0.81328 0.99035 1.45915 1.45523 1.34690 1.01610 1.20099 0.81548 0.84507 0.84690 1.90768 1.56331 1.60583 1.30447 1.22237 1.04478 0.98851 0.77591 1.48278 1.18293 1.31531 1.12021 1.77717 1.13632 1.06699 1.06151 1.24021 0.93981 0.99857 0.95620 1.21352 1.02139 1.00100 0.96398 1.21587 0.91702 0.99542 0.94873 1.42495 1.00030 0.99352 1.00772 1.94602 1.80382 1.53370 1.07900 1.94572 1.29695 1.63886 1.45977 1.17630 0.91743 0.95019 0.88562 1.21440 1.00482 0.97018 0.94679 1.20955 0.94882 0.99393 0.96137 1.21027 0.93042 1.00213 0.99652 1.20705 0.85914 1.02260 0.95930 1.98370 1.16852 1.96689 1.92324 1.21385 0.96381 1.00005 0.96243 0.92480 0.94095 0.93358 0.84356 0.85076 0.77372 0.80419 0.84777 0.84706 0.84950 0.84038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 3 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 4 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.53 -14.79 9.39 -34.44 -0.32 -15.12 16 8 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.25 6.28 5.07 -5.19 -0.03 6.25 16 10 N -0.55 -11.14 2.51 -114.74 -0.29 -11.43 16 11 C 0.51 10.23 7.60 -10.99 -0.08 10.15 16 12 O -0.51 -12.52 16.06 5.55 0.09 -12.43 16 13 C 0.09 1.43 5.03 -5.20 -0.03 1.40 16 14 N -0.31 -4.87 3.11 -59.23 -0.18 -5.05 16 15 N -0.22 -2.99 12.58 30.62 0.39 -2.61 16 16 C 0.05 0.50 12.03 -17.37 -0.21 0.30 16 17 C -0.17 -1.90 10.49 -40.01 -0.42 -2.32 16 18 C 0.13 1.97 7.94 -144.61 -1.15 0.83 16 19 N 0.05 0.83 4.45 32.87 0.15 0.98 16 20 O -0.15 -2.63 16.78 -29.46 -0.49 -3.12 16 21 O -0.12 -1.92 19.03 -29.46 -0.56 -2.48 16 22 C 0.16 2.69 4.45 -83.70 -0.37 2.31 16 23 C -0.12 -1.59 9.61 -39.39 -0.38 -1.97 16 24 C -0.09 -1.03 10.04 -39.62 -0.40 -1.43 16 25 C -0.12 -1.33 9.83 -39.51 -0.39 -1.72 16 26 C -0.02 -0.27 6.32 -39.52 -0.25 -0.52 16 27 Cl -0.07 -0.88 28.95 -51.86 -1.50 -2.38 16 28 C -0.12 -1.84 8.20 -39.35 -0.32 -2.16 16 29 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.04 1.03 7.80 -51.93 -0.41 0.62 16 31 H 0.05 1.36 7.49 -51.93 -0.39 0.97 16 32 H 0.14 2.00 5.09 -51.93 -0.26 1.73 16 33 H 0.13 1.64 8.03 -51.93 -0.42 1.22 16 34 H 0.21 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.18 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.14 2.31 7.88 -52.49 -0.41 1.90 16 LS Contribution 371.77 15.07 5.60 5.60 Total: -1.00 -34.25 371.77 -9.08 -43.33 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -3.55 Total: 0.14 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -4.44 Total: -2.26 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: 0.80 Total: -43.42 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.97 Total: -18.03 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.50 Total: -2.38 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.25 -9.08 -43.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119734543.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.686 kcal (2) G-P(sol) polarization free energy of solvation -34.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds