Wall clock time and date at job start Tue Mar 31 2020 05:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99578 * 2 1 4 4 H 1.48497 * 109.47071 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47205 * 299.99556 * 3 2 1 6 6 H 1.48503 * 109.47133 * 59.99856 * 3 2 1 7 7 C 1.37874 * 120.00187 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00072 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99970 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47221 * 179.97438 * 9 7 2 11 11 S 1.81393 * 109.47422 * 179.97438 * 10 9 7 12 12 O 1.42105 * 110.54359 * 62.61572 * 11 10 9 13 13 O 1.42102 * 110.54435 * 285.86559 * 11 10 9 14 14 C 1.76194 * 104.45042 * 174.24036 * 11 10 9 15 15 C 1.38264 * 119.99008 * 111.91000 * 14 11 10 16 16 C 1.38204 * 120.00950 * 180.27635 * 15 14 11 17 17 C 1.38344 * 119.98697 * 359.46702 * 16 15 14 18 18 Br 1.89100 * 120.01036 * 180.29958 * 17 16 15 19 19 C 1.38306 * 119.97969 * 0.53150 * 17 16 15 20 20 C 1.38221 * 119.98976 * 291.92698 * 14 11 10 21 21 N 1.48000 * 119.99408 * 359.97438 * 20 14 11 22 22 O 1.21806 * 120.00032 * 188.64485 * 21 20 14 23 23 O 1.21798 * 120.00514 * 8.64281 * 21 20 14 24 24 H 0.97003 * 120.00382 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47056 * 59.99974 * 9 7 2 26 26 H 1.09004 * 109.47426 * 299.99778 * 9 7 2 27 27 H 1.09007 * 109.46657 * 59.99826 * 10 9 7 28 28 H 1.08993 * 109.47467 * 300.00563 * 10 9 7 29 29 H 1.07998 * 119.99783 * 0.02562 * 15 14 11 30 30 H 1.07997 * 120.00045 * 179.73058 * 16 15 14 31 31 H 1.08002 * 120.00162 * 179.76294 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 16 1.3385 -5.2330 0.0013 12 8 0.5587 -5.3592 -1.1800 13 8 0.7746 -5.4826 1.2815 14 6 2.5889 -6.4625 -0.1700 15 6 2.8638 -7.3195 0.8796 16 6 3.8484 -8.2804 0.7477 17 6 4.5513 -8.3918 -0.4387 18 35 5.8928 -9.7118 -0.6228 19 6 4.2759 -7.5343 -1.4883 20 6 3.2948 -6.5698 -1.3535 21 7 2.9999 -5.6523 -2.4767 22 8 3.5055 -5.8436 -3.5682 23 8 2.2516 -4.7060 -2.3097 24 1 -0.4851 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8721 -3.6042 0.8906 28 1 2.8721 -3.6043 -0.8893 29 1 2.3119 -7.2355 1.8041 30 1 4.0660 -8.9468 1.5692 31 1 4.8270 -7.6185 -2.4133 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125203265.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:30 Heat of formation + Delta-G solvation = -25.121904 kcal Electronic energy + Delta-G solvation = -22449.277975 eV Core-core repulsion = 18680.926841 eV Total energy + Delta-G solvation = -3768.351133 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 362.965 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.43246 -39.91518 -37.15984 -36.40646 -35.62488 -33.90063 -33.52354 -32.49608 -31.19147 -30.35145 -27.02722 -25.67258 -23.85538 -22.96673 -21.66964 -19.90951 -18.89542 -18.63835 -17.73590 -17.67972 -16.64237 -16.50884 -15.74437 -15.51098 -15.21334 -15.08116 -14.51783 -14.19462 -13.56418 -13.30368 -12.71476 -12.52020 -11.95278 -11.93067 -11.83761 -11.73053 -11.53962 -11.49749 -11.16791 -11.09400 -11.00971 -10.90418 -10.77230 -10.39861 -10.24060 -10.16197 -9.93037 -9.67877 -9.16711 -8.46768 -6.09433 -4.14511 -0.77675 -0.06989 0.28858 0.55452 0.96174 1.13532 2.39534 3.00708 3.28647 3.36035 3.39170 3.61413 3.93371 4.02432 4.13109 4.31389 4.39995 4.55186 4.73790 4.85583 5.03172 5.12038 5.26354 5.54448 5.61163 5.64833 6.15112 6.47022 7.29335 7.42070 7.47787 7.83491 8.18783 8.88110 9.49663 11.01586 Molecular weight = 362.97amu Principal moments of inertia in cm(-1) A = 0.018785 B = 0.002935 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.161201 B = 9536.238088 C = 9771.052988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.516 4.516 8 H 0.062 0.938 9 C 0.032 3.968 10 C -0.547 4.547 11 S 2.463 3.537 12 O -0.912 6.912 13 O -0.941 6.941 14 C -0.595 4.595 15 C -0.016 4.016 16 C -0.063 4.063 17 C -0.059 4.059 18 Br -0.008 7.008 19 C -0.046 4.046 20 C 0.046 3.954 21 N 0.006 4.994 22 O -0.142 6.142 23 O -0.103 6.103 24 H 0.265 0.735 25 H 0.046 0.954 26 H 0.033 0.967 27 H 0.120 0.880 28 H 0.134 0.866 29 H 0.178 0.822 30 H 0.162 0.838 31 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.960 -22.007 1.330 25.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.209 1.209 7 C -0.556 4.556 8 H 0.080 0.920 9 C -0.007 4.007 10 C -0.682 4.682 11 S 2.640 3.360 12 O -0.909 6.909 13 O -0.938 6.938 14 C -0.675 4.675 15 C -0.035 4.035 16 C -0.084 4.084 17 C -0.140 4.140 18 Br 0.078 6.922 19 C -0.068 4.068 20 C -0.038 4.038 21 N 0.526 4.474 22 O -0.357 6.357 23 O -0.322 6.322 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.138 0.862 28 H 0.152 0.848 29 H 0.195 0.805 30 H 0.179 0.821 31 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 12.640 -23.175 1.849 26.462 hybrid contribution 1.021 1.196 -0.377 1.617 sum 13.661 -21.979 1.473 25.920 Atomic orbital electron populations 1.69961 1.06051 1.27085 1.49593 1.25034 0.94971 0.99420 0.94913 0.86417 0.79914 0.83216 0.77749 1.19692 1.20717 1.20879 1.20977 0.93075 0.89422 1.52126 0.91983 1.19031 0.92597 0.89648 0.99432 1.30329 1.13515 1.13869 1.10483 1.07388 0.76112 0.77625 0.74884 1.93619 1.64819 1.85275 1.47216 1.93516 1.74229 1.84730 1.41299 1.31610 1.18968 1.19592 0.97307 1.21262 0.94164 0.90336 0.97774 1.21764 0.93040 0.97196 0.96372 1.21984 0.98344 0.97328 0.96307 1.96880 1.47934 1.49246 1.98133 1.21021 0.94725 0.90961 1.00044 1.20528 1.00260 0.95394 0.87577 1.43612 1.00315 1.01426 1.02002 1.94526 1.52185 1.78336 1.10621 1.94712 1.29443 1.19488 1.88563 0.92568 0.93576 0.94900 0.86189 0.84849 0.80461 0.82082 0.81282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.03 9.11 -34.44 -0.31 -14.35 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.03 0.80 4.98 -27.88 -0.14 0.66 16 10 C -0.55 -10.44 5.18 37.16 0.19 -10.24 16 11 S 2.46 43.78 4.49 -107.50 -0.48 43.30 16 12 O -0.91 -19.06 14.89 -67.49 -1.00 -20.06 16 13 O -0.94 -17.55 16.75 -57.54 -0.96 -18.51 16 14 C -0.60 -8.19 5.59 -39.58 -0.22 -8.41 16 15 C -0.02 -0.16 9.50 -39.58 -0.38 -0.54 16 16 C -0.06 -0.49 9.79 -39.55 -0.39 -0.88 16 17 C -0.06 -0.51 6.22 -39.52 -0.25 -0.76 16 18 Br -0.01 -0.06 33.70 -68.01 -2.29 -2.35 16 19 C -0.05 -0.49 9.30 -39.56 -0.37 -0.86 16 20 C 0.05 0.63 6.76 -79.96 -0.54 0.09 16 21 N 0.01 0.10 4.41 33.96 0.15 0.25 16 22 O -0.14 -2.27 18.48 -29.46 -0.54 -2.82 16 23 O -0.10 -2.00 10.91 -37.41 -0.41 -2.41 16 24 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 25 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 26 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.12 1.94 8.14 -51.92 -0.42 1.52 16 28 H 0.13 2.45 5.68 -51.93 -0.30 2.16 16 29 H 0.18 1.51 7.22 -52.49 -0.38 1.13 16 30 H 0.16 0.70 8.06 -52.49 -0.42 0.27 16 31 H 0.17 1.49 7.64 -52.49 -0.40 1.08 16 LS Contribution 308.74 15.07 4.65 4.65 Total: -1.00 -33.53 308.74 -9.98 -43.51 By element: Atomic # 1 Polarization: -0.25 SS G_CDS: -2.31 Total: -2.56 kcal Atomic # 6 Polarization: -31.22 SS G_CDS: -2.50 Total: -33.72 kcal Atomic # 7 Polarization: -25.96 SS G_CDS: 0.89 Total: -25.07 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -2.92 Total: -43.80 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 43.78 SS G_CDS: -0.48 Total: 43.30 kcal Atomic # 35 Polarization: -0.06 SS G_CDS: -2.29 Total: -2.35 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.53 -9.98 -43.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125203265.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.387 kcal (2) G-P(sol) polarization free energy of solvation -33.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds