Wall clock time and date at job start Tue Mar 31 2020 06:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38285 * 119.93095 * 2 1 4 4 C 1.38118 * 120.07136 * 179.97438 * 3 2 1 5 5 C 1.38870 * 119.92896 * 359.97438 * 4 3 2 6 6 N 1.39919 * 120.07300 * 179.97438 * 5 4 3 7 7 C 1.46510 * 119.99783 * 303.97736 * 6 5 4 8 8 C 1.50703 * 109.47031 * 270.00180 * 7 6 5 9 9 H 1.08007 * 119.99748 * 359.97438 * 8 7 6 10 10 C 1.37874 * 119.99874 * 180.02562 * 8 7 6 11 11 N 1.31511 * 120.00226 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99755 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47189 * 59.99767 * 12 10 8 14 14 H 1.48501 * 109.46975 * 179.97438 * 12 10 8 15 15 H 1.48493 * 109.47056 * 299.99689 * 12 10 8 16 16 C 1.34777 * 120.00636 * 123.97854 * 6 5 4 17 17 O 1.21287 * 119.99452 * 354.41347 * 16 6 5 18 18 C 1.50693 * 120.00297 * 174.41686 * 16 6 5 19 19 H 1.08998 * 109.47753 * 39.99144 * 18 16 6 20 20 C 1.53009 * 109.46977 * 279.99482 * 18 16 6 21 21 S 1.81004 * 109.47451 * 159.99801 * 18 16 6 22 22 C 1.76199 * 100.00196 * 184.99615 * 21 18 16 23 23 N 1.28545 * 125.01514 * 0.02562 * 22 21 18 24 24 C 1.44587 * 119.82377 * 179.97438 * 23 22 21 25 25 C 1.53665 * 111.24824 * 0.02562 * 24 23 22 26 26 S 1.76750 * 125.01511 * 179.69493 * 22 21 18 27 27 C 1.38880 * 119.85707 * 0.24907 * 5 4 3 28 28 C 1.38114 * 119.93050 * 359.51912 * 27 5 4 29 29 H 1.09000 * 109.47232 * 89.99406 * 1 2 3 30 30 H 1.08994 * 109.47613 * 210.00014 * 1 2 3 31 31 H 1.09003 * 109.47167 * 330.00277 * 1 2 3 32 32 H 1.08001 * 119.96802 * 359.97438 * 3 2 1 33 33 H 1.07998 * 120.03538 * 180.02562 * 4 3 2 34 34 H 1.09003 * 109.46555 * 29.99781 * 7 6 5 35 35 H 1.08993 * 109.47320 * 149.99775 * 7 6 5 36 36 H 0.96993 * 120.00045 * 180.02562 * 11 10 8 37 37 H 1.08994 * 109.47072 * 179.97438 * 20 18 16 38 38 H 1.09007 * 109.46983 * 60.00363 * 20 18 16 39 39 H 1.08990 * 109.47185 * 300.00220 * 20 18 16 40 40 H 1.09000 * 109.13471 * 120.47062 * 24 23 22 41 41 H 1.08995 * 109.13434 * 239.53014 * 24 23 22 42 42 H 1.08999 * 110.65984 * 118.44798 * 25 24 23 43 43 H 1.09003 * 110.65932 * 241.55117 * 25 24 23 44 44 H 1.08001 * 120.03033 * 179.74948 * 27 5 4 45 45 H 1.07996 * 119.96130 * 180.22663 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5781 1.2018 0.0005 5 6 4.2739 0.0000 0.0016 6 7 5.6731 -0.0001 0.0016 7 6 6.4056 0.7080 -1.0512 8 6 6.6567 -0.2281 -2.2052 9 1 6.3060 -1.2486 -2.1588 10 6 7.3349 0.2178 -3.3197 11 7 7.7623 1.4603 -3.3760 12 14 7.6467 -0.9428 -4.7498 13 1 6.3493 -1.4247 -5.2883 14 1 8.3891 -0.2251 -5.8170 15 1 8.4490 -2.1012 -4.2813 16 6 6.3471 -0.6516 0.9700 17 8 5.7449 -1.1515 1.8966 18 6 7.8486 -0.7587 0.9017 19 1 8.2648 0.1859 0.5515 20 6 8.2365 -1.8773 -0.0676 21 16 8.5025 -1.1329 2.5475 22 6 10.2311 -1.0523 2.2157 23 7 10.7506 -0.7886 1.0699 24 6 12.1886 -0.7507 0.9239 25 6 12.8918 -1.0539 2.2562 26 16 11.5065 -1.3140 3.4110 27 6 3.5780 -1.2019 -0.0031 28 6 2.1968 -1.1984 0.0012 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6553 2.1328 -0.0004 33 1 4.1164 2.1381 0.0010 34 1 5.8165 1.5584 -1.3947 35 1 7.3580 1.0616 -0.6564 36 1 8.2391 1.7741 -4.1602 37 1 9.3226 -1.9545 -0.1174 38 1 7.8428 -1.6519 -1.0588 39 1 7.8204 -2.8218 0.2824 40 1 12.4922 -1.4909 0.1836 41 1 12.4868 0.2395 0.5795 42 1 13.5024 -1.9530 2.1729 43 1 13.4971 -0.2048 2.5736 44 1 4.1163 -2.1381 -0.0064 45 1 1.6552 -2.1327 0.0013 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125969726.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:27 Heat of formation + Delta-G solvation = 19.297276 kcal Electronic energy + Delta-G solvation = -28060.894778 eV Core-core repulsion = 24296.156584 eV Total energy + Delta-G solvation = -3764.738194 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 364.102 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.11927 -38.28994 -37.69153 -35.38536 -33.28878 -32.55267 -31.24084 -30.72749 -30.57563 -27.60781 -26.21915 -25.32098 -23.96633 -23.42199 -22.07271 -21.45028 -21.25483 -19.30966 -18.14090 -17.11189 -16.67155 -16.22294 -15.92984 -15.81429 -15.22113 -15.08735 -14.62291 -14.57891 -14.07823 -14.01265 -13.77822 -13.51092 -13.22310 -13.05385 -12.98596 -12.70089 -12.59630 -12.21123 -12.04636 -11.83051 -11.78826 -11.60978 -11.47372 -11.35338 -11.18639 -11.10170 -11.05792 -10.87544 -10.73205 -10.25058 -10.11453 -9.84269 -9.44795 -9.29401 -8.74346 -8.64217 -8.52336 -8.03607 -7.71383 -7.51908 -6.29044 -4.35293 0.88817 1.57025 1.67438 1.76252 1.81930 1.87869 2.22508 3.05639 3.18182 3.23322 3.26805 3.66651 4.14602 4.23429 4.25812 4.56243 4.77215 4.98934 5.04104 5.14978 5.16154 5.17597 5.36385 5.37831 5.43818 5.45655 5.55164 5.64299 5.71826 5.79270 5.88102 6.04872 6.10291 6.30036 6.39300 6.40730 6.57612 6.75847 6.86127 6.92755 6.99265 7.04681 7.19057 7.25943 7.52113 7.63584 7.88656 7.98503 8.58202 8.72616 9.29776 10.77632 Molecular weight = 364.10amu Principal moments of inertia in cm(-1) A = 0.009012 B = 0.003562 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3106.113070 B = 7857.819781 C =10226.091908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.109 4.109 3 C -0.109 4.109 4 C -0.124 4.124 5 C 0.173 3.827 6 N -0.547 5.547 7 C 0.235 3.765 8 C -0.538 4.538 9 H 0.066 0.934 10 C 0.071 3.929 11 N -0.885 5.885 12 Si 0.894 3.106 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.273 1.273 16 C 0.540 3.460 17 O -0.542 6.542 18 C -0.090 4.090 19 H 0.130 0.870 20 C -0.157 4.157 21 S 0.048 5.952 22 C 0.165 3.835 23 N -0.511 5.511 24 C 0.042 3.958 25 C -0.116 4.116 26 S -0.171 6.171 27 C -0.107 4.107 28 C -0.109 4.109 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.267 0.733 37 H 0.076 0.924 38 H 0.117 0.883 39 H 0.052 0.948 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.119 0.881 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.432 -2.508 7.670 8.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.109 4.109 3 C -0.128 4.128 4 C -0.144 4.144 5 C 0.081 3.919 6 N -0.273 5.273 7 C 0.116 3.884 8 C -0.576 4.576 9 H 0.084 0.916 10 C -0.133 4.133 11 N -0.522 5.522 12 Si 0.721 3.279 13 H -0.200 1.200 14 H -0.211 1.211 15 H -0.198 1.198 16 C 0.327 3.673 17 O -0.421 6.421 18 C -0.223 4.223 19 H 0.147 0.853 20 C -0.216 4.216 21 S 0.279 5.721 22 C -0.242 4.242 23 N -0.231 5.231 24 C -0.094 4.094 25 C -0.268 4.268 26 S 0.055 5.945 27 C -0.126 4.126 28 C -0.128 4.128 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.138 0.862 33 H 0.142 0.858 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.135 0.865 39 H 0.071 0.929 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.137 0.863 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.511 -2.893 9.329 9.780 hybrid contribution 1.698 -0.029 -2.855 3.322 sum 2.209 -2.921 6.474 7.438 Atomic orbital electron populations 1.20705 0.91631 1.02202 1.01855 1.19786 0.95691 0.93227 1.02199 1.20757 0.93389 0.97310 1.01310 1.21080 0.94181 0.97301 1.01791 1.17574 0.82937 0.93231 0.98188 1.45828 1.03551 1.50886 1.26986 1.19703 0.91880 0.92674 0.84104 1.21274 1.37441 0.97892 1.00958 0.91628 1.24882 0.95012 0.95207 0.98183 1.69892 1.37200 1.15180 1.29963 0.86609 0.78668 0.80889 0.81750 1.19980 1.21053 1.19836 1.19672 0.88030 0.77876 0.81744 1.90686 1.69862 1.47805 1.33742 1.23566 0.95772 1.06930 0.96046 0.85272 1.22302 1.03316 0.94387 1.01582 1.86268 0.86461 1.86117 1.13301 1.29276 1.03943 0.98093 0.92913 1.70682 1.11439 1.19416 1.21544 1.22891 0.85103 1.04746 0.96631 1.24921 0.98998 1.06607 0.96263 1.86604 0.99596 1.88888 1.19398 1.21084 0.94054 0.97400 1.00111 1.20780 0.93480 0.97310 1.01229 0.91612 0.91974 0.91959 0.86213 0.85840 0.93822 0.93868 0.92287 0.90531 0.86455 0.92851 0.87877 0.87768 0.87371 0.87369 0.86269 0.86339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 10.01 36.00 0.36 -0.80 16 2 C -0.11 -1.59 5.88 -104.59 -0.62 -2.21 16 3 C -0.11 -1.67 9.69 -39.61 -0.38 -2.05 16 4 C -0.12 -2.22 9.31 -39.39 -0.37 -2.58 16 5 C 0.17 3.45 5.18 -83.69 -0.43 3.02 16 6 N -0.55 -11.49 2.57 -114.73 -0.29 -11.79 16 7 C 0.23 5.36 4.83 -5.19 -0.03 5.34 16 8 C -0.54 -13.15 6.87 -34.44 -0.24 -13.39 16 9 H 0.07 1.63 7.19 -52.48 -0.38 1.25 16 10 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 11 N -0.89 -23.38 13.29 55.43 0.74 -22.64 16 12 Si 0.89 19.86 29.54 -169.99 -5.02 14.84 16 13 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 14 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 15 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 16 C 0.54 11.19 6.62 -10.99 -0.07 11.12 16 17 O -0.54 -12.02 15.40 5.55 0.09 -11.93 16 18 C -0.09 -1.71 1.96 -27.88 -0.05 -1.77 16 19 H 0.13 2.57 6.19 -51.92 -0.32 2.25 16 20 C -0.16 -2.95 8.94 37.16 0.33 -2.62 16 21 S 0.05 0.81 21.01 -107.50 -2.26 -1.44 16 22 C 0.16 2.58 7.45 51.39 0.38 2.96 16 23 N -0.51 -8.02 8.18 -61.41 -0.50 -8.52 16 24 C 0.04 0.49 7.54 -4.72 -0.04 0.45 16 25 C -0.12 -1.12 7.48 37.50 0.28 -0.84 16 26 S -0.17 -2.25 23.28 -107.50 -2.50 -4.75 16 27 C -0.11 -2.00 8.93 -39.39 -0.35 -2.35 16 28 C -0.11 -1.73 9.69 -39.61 -0.38 -2.12 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 31 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 32 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.12 2.12 7.78 -52.49 -0.41 1.71 16 34 H 0.04 1.05 7.30 -51.93 -0.38 0.67 16 35 H 0.04 1.02 6.02 -51.93 -0.31 0.71 16 36 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 37 H 0.08 1.39 5.88 -51.93 -0.31 1.08 16 38 H 0.12 2.47 4.48 -51.93 -0.23 2.23 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.12 2.27 8.04 -52.49 -0.42 1.85 16 45 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 LS Contribution 392.74 15.07 5.92 5.92 Total: -1.00 -28.29 392.74 -11.66 -39.95 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -6.12 Total: 6.51 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -1.70 Total: -6.13 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: -0.06 Total: -42.96 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.09 Total: -11.93 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -4.76 Total: -6.19 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -28.29 -11.66 -39.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125969726.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.245 kcal (2) G-P(sol) polarization free energy of solvation -28.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds