Wall clock time and date at job start Tue Mar 31 2020 05:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38303 * 119.96506 * 2 1 4 4 C 1.38256 * 120.14303 * 180.02562 * 3 2 1 5 5 C 1.38138 * 120.06979 * 359.73935 * 4 3 2 6 6 C 1.38853 * 119.92846 * 0.53256 * 5 4 3 7 7 N 1.39920 * 120.07096 * 179.74553 * 6 5 4 8 8 C 1.46496 * 120.00013 * 89.72708 * 7 6 5 9 9 C 1.50706 * 109.47106 * 269.99644 * 8 7 6 10 10 H 1.07999 * 119.99515 * 0.02562 * 9 8 7 11 11 C 1.37870 * 120.00176 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99883 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00043 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47293 * 89.99746 * 13 11 9 15 15 H 1.48504 * 109.47104 * 209.99992 * 13 11 9 16 16 H 1.48495 * 109.47249 * 329.99739 * 13 11 9 17 17 C 1.34779 * 120.00200 * 269.72139 * 7 6 5 18 18 O 1.21288 * 120.00246 * 180.02562 * 17 7 6 19 19 C 1.50703 * 119.99735 * 0.02562 * 17 7 6 20 20 N 1.46497 * 109.47053 * 179.97438 * 19 17 7 21 21 C 1.34845 * 126.27344 * 264.68761 * 20 19 17 22 22 N 1.30411 * 109.74071 * 179.88142 * 21 20 19 23 23 C 1.34548 * 109.54850 * 0.38751 * 22 21 20 24 24 C 1.43202 * 126.40570 * 179.76167 * 23 22 21 25 25 N 9.91714 * 107.10203 * 225.07803 * 2 1 3 26 26 C 1.37448 * 126.27079 * 85.00139 * 20 19 17 27 27 C 1.43201 * 126.96436 * 0.02562 * 26 20 19 28 28 N 6.23131 * 92.63299 * 213.53749 * 2 1 3 29 29 C 1.38095 * 119.96359 * 180.02562 * 2 1 3 30 30 C 1.50693 * 120.03580 * 0.02562 * 29 2 1 31 31 H 1.08999 * 109.47120 * 269.97967 * 1 2 3 32 32 H 1.08996 * 109.47192 * 29.98335 * 1 2 3 33 33 H 1.09004 * 109.46832 * 149.98167 * 1 2 3 34 34 H 1.08001 * 119.92574 * 359.97214 * 3 2 1 35 35 H 1.07999 * 119.96858 * 180.02562 * 4 3 2 36 36 H 1.08005 * 120.03869 * 180.25877 * 5 4 3 37 37 H 1.09001 * 109.47001 * 149.99934 * 8 7 6 38 38 H 1.09000 * 109.47574 * 30.00151 * 8 7 6 39 39 H 0.97004 * 119.99507 * 180.02562 * 12 11 9 40 40 H 1.09002 * 109.47387 * 299.99688 * 19 17 7 41 41 H 1.09000 * 109.47393 * 59.99972 * 19 17 7 42 42 H 1.08002 * 125.13033 * 0.02562 * 21 20 19 43 43 H 1.09006 * 109.46986 * 269.97424 * 30 29 2 44 44 H 1.08997 * 109.47150 * 29.97550 * 30 29 2 45 45 H 1.08997 * 109.47303 * 149.97860 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5803 1.2025 -0.0005 5 6 4.2762 0.0092 0.0044 6 6 3.5857 -1.1955 -0.0013 7 7 4.2875 -2.4059 -0.0018 8 6 4.6553 -3.0398 1.2667 9 6 6.0107 -2.5445 1.7013 10 1 6.5444 -1.8288 1.0936 11 6 6.5693 -3.0050 2.8747 12 7 5.9195 -3.8770 3.6144 13 14 8.2489 -2.3906 3.4138 14 1 8.0856 -1.1796 4.2576 15 1 8.9360 -3.4498 4.1956 16 1 9.0605 -2.0539 2.2166 17 6 4.6251 -2.9888 -1.1692 18 8 5.2331 -4.0383 -1.1696 19 6 4.2471 -2.3365 -2.4741 20 7 4.7246 -3.1596 -3.5879 21 6 5.8827 -2.9987 -4.2596 22 7 5.9848 -3.9107 -5.1862 23 6 4.8949 -4.6992 -5.1639 24 6 4.6315 -5.8099 -6.0286 25 7 4.4234 -6.6933 -6.7115 26 6 4.0715 -4.2338 -4.1435 27 6 2.8005 -4.7651 -3.7524 28 7 1.7932 -5.1885 -3.4391 29 6 2.1967 -1.1964 -0.0005 30 6 1.4432 -2.5014 -0.0017 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8901 -0.5136 33 1 -0.3633 -0.8899 -0.5141 34 1 1.6560 2.1324 -0.0005 35 1 4.1169 2.1397 -0.0001 36 1 5.3562 0.0131 0.0082 37 1 4.6885 -4.1215 1.1361 38 1 3.9156 -2.7882 2.0266 39 1 6.3124 -4.2007 4.4401 40 1 3.1629 -2.2404 -2.5316 41 1 4.7030 -1.3481 -2.5317 42 1 6.6162 -2.2318 -4.0589 43 1 1.2616 -2.8170 1.0257 44 1 0.4908 -2.3706 -0.5154 45 1 2.0323 -3.2606 -0.5161 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126114510.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:12 Heat of formation + Delta-G solvation = 127.928954 kcal Electronic energy + Delta-G solvation = -32083.695317 eV Core-core repulsion = 27875.482337 eV Total energy + Delta-G solvation = -4208.212980 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.144 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.73341 -40.43461 -38.71982 -36.85228 -36.68194 -35.44990 -34.43952 -33.37953 -32.91055 -30.84233 -30.73900 -29.15969 -27.61926 -26.87192 -26.25856 -24.49866 -23.14865 -22.66671 -22.40582 -20.84175 -19.96164 -18.89292 -17.99588 -17.58174 -16.83320 -16.39414 -15.99180 -15.77517 -15.56619 -15.29205 -15.06870 -14.68547 -14.32721 -14.18212 -14.05250 -13.62875 -13.59933 -13.41845 -13.31630 -13.15205 -13.00295 -12.99416 -12.88048 -12.83138 -12.78273 -12.60873 -12.21661 -11.95650 -11.76628 -11.63239 -11.31005 -11.07971 -10.94603 -10.77052 -10.69090 -10.55374 -10.32261 -9.87659 -9.59816 -8.96924 -8.60893 -8.55207 -8.47583 -8.22364 -6.20927 -4.26783 0.49227 1.27958 1.37529 1.66220 2.04860 2.30533 2.50206 2.71404 2.83167 3.19906 3.22821 3.27984 3.30518 3.43202 3.47021 3.56381 3.67449 4.29219 4.32873 4.39201 4.50058 4.72667 4.73137 4.78430 4.86317 5.01910 5.11468 5.15073 5.29279 5.44521 5.51037 5.53691 5.60419 5.69101 5.72614 5.80382 5.83427 5.98076 6.25207 6.37923 6.45819 6.52218 6.65528 6.71782 6.99170 7.05875 7.06691 7.21635 7.23271 7.32980 7.72133 7.96248 7.99201 8.43806 8.75167 9.38605 10.87670 Molecular weight = 363.14amu Principal moments of inertia in cm(-1) A = 0.007244 B = 0.003978 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3864.126977 B = 7037.520384 C = 9269.639333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.084 4.084 3 C -0.117 4.117 4 C -0.116 4.116 5 C -0.107 4.107 6 C 0.137 3.863 7 N -0.547 5.547 8 C 0.253 3.747 9 C -0.530 4.530 10 H 0.059 0.941 11 C 0.065 3.935 12 N -0.891 5.891 13 Si 0.899 3.101 14 H -0.280 1.280 15 H -0.284 1.284 16 H -0.273 1.273 17 C 0.496 3.504 18 O -0.507 6.507 19 C 0.073 3.927 20 N -0.407 5.407 21 C 0.252 3.748 22 N -0.451 5.451 23 C 0.138 3.862 24 C 0.297 3.703 25 N -0.392 5.392 26 C 0.105 3.895 27 C 0.273 3.727 28 N -0.368 5.368 29 C -0.086 4.086 30 C -0.116 4.116 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.120 0.880 35 H 0.124 0.876 36 H 0.131 0.869 37 H 0.048 0.952 38 H 0.036 0.964 39 H 0.265 0.735 40 H 0.121 0.879 41 H 0.138 0.862 42 H 0.231 0.769 43 H 0.077 0.923 44 H 0.068 0.932 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.652 12.833 -11.032 18.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.135 4.135 4 C -0.135 4.135 5 C -0.126 4.126 6 C 0.046 3.954 7 N -0.276 5.276 8 C 0.136 3.864 9 C -0.569 4.569 10 H 0.077 0.923 11 C -0.138 4.138 12 N -0.529 5.529 13 Si 0.726 3.274 14 H -0.206 1.206 15 H -0.210 1.210 16 H -0.198 1.198 17 C 0.280 3.720 18 O -0.381 6.381 19 C -0.053 4.053 20 N -0.085 5.085 21 C -0.032 4.032 22 N -0.168 5.168 23 C 0.000 4.000 24 C -0.020 4.020 25 N -0.069 5.069 26 C -0.019 4.019 27 C -0.044 4.044 28 N -0.045 5.045 29 C -0.087 4.087 30 C -0.173 4.173 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.149 0.851 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.075 0.925 40 H 0.139 0.861 41 H 0.156 0.844 42 H 0.247 0.753 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.511 10.146 -11.784 17.727 hybrid contribution 0.975 1.129 1.584 2.176 sum -7.537 11.274 -10.200 16.969 Atomic orbital electron populations 1.20843 0.91282 1.02630 1.02472 1.19591 0.95854 0.92144 1.00865 1.21006 0.94263 0.97195 1.01078 1.21014 0.94044 0.97702 1.00702 1.21499 1.00795 0.91338 0.98950 1.17565 0.89657 0.86307 1.01848 1.45784 1.53531 1.20352 1.07908 1.19473 0.95982 0.94302 0.76665 1.21286 1.02566 1.26294 1.06758 0.92253 1.24911 0.97916 0.94759 0.96240 1.69922 1.38382 1.30304 1.14303 0.86482 0.83679 0.78469 0.78738 1.20563 1.20996 1.19753 1.20110 0.81230 0.86070 0.84584 1.90815 1.39113 1.21953 1.86236 1.22207 1.03468 0.95268 0.84359 1.44909 1.16685 1.22077 1.24878 1.25207 0.87820 1.00153 0.89998 1.70360 1.20419 1.04699 1.21331 1.15579 0.93101 0.95574 0.95746 1.23723 0.93992 0.91699 0.92563 1.81262 1.07074 1.09719 1.08818 1.15910 0.91283 0.95028 0.99720 1.23830 0.91160 0.94855 0.94561 1.81345 1.10551 1.06569 1.06053 1.20008 0.92762 0.95392 1.00571 1.20804 0.99365 0.93924 1.03165 0.91101 0.91709 0.91227 0.86157 0.85806 0.85098 0.93354 0.94564 0.92492 0.86057 0.84397 0.75325 0.90450 0.91286 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 9.60 36.00 0.35 -0.62 16 2 C -0.08 -0.91 5.88 -104.65 -0.62 -1.53 16 3 C -0.12 -1.17 9.70 -39.55 -0.38 -1.55 16 4 C -0.12 -1.22 10.04 -39.61 -0.40 -1.62 16 5 C -0.11 -1.39 9.97 -39.39 -0.39 -1.78 16 6 C 0.14 2.01 3.90 -83.69 -0.33 1.68 16 7 N -0.55 -9.77 1.63 -114.73 -0.19 -9.95 16 8 C 0.25 5.95 5.15 -5.19 -0.03 5.92 16 9 C -0.53 -13.58 9.39 -34.44 -0.32 -13.90 16 10 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 12 N -0.89 -25.10 13.29 55.43 0.74 -24.36 16 13 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 14 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 17 C 0.50 8.27 7.05 -10.98 -0.08 8.19 16 18 O -0.51 -10.75 16.01 5.55 0.09 -10.66 16 19 C 0.07 0.78 5.21 -5.19 -0.03 0.75 16 20 N -0.41 -4.45 2.24 -116.58 -0.26 -4.71 16 21 C 0.25 2.38 12.47 -90.63 -1.13 1.25 16 22 N -0.45 -5.33 11.24 -11.99 -0.13 -5.47 16 23 C 0.14 1.74 6.94 -84.42 -0.59 1.15 16 24 C 0.30 4.04 15.65 -22.48 -0.35 3.69 16 25 N -0.39 -5.84 18.54 41.83 0.78 -5.07 16 26 C 0.10 1.30 6.84 -83.09 -0.57 0.73 16 27 C 0.27 3.72 15.19 -22.45 -0.34 3.38 16 28 N -0.37 -5.50 18.54 41.86 0.78 -4.73 16 29 C -0.09 -1.11 5.90 -104.43 -0.62 -1.73 16 30 C -0.12 -1.49 9.36 36.00 0.34 -1.15 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.43 8.08 -51.93 -0.42 0.02 16 33 H 0.07 0.55 5.94 -51.93 -0.31 0.25 16 34 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.13 1.76 8.06 -52.48 -0.42 1.34 16 37 H 0.05 1.30 7.42 -51.93 -0.39 0.92 16 38 H 0.04 0.90 8.05 -51.93 -0.42 0.48 16 39 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.12 1.15 7.96 -51.93 -0.41 0.73 16 41 H 0.14 1.00 8.09 -51.93 -0.42 0.58 16 42 H 0.23 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.07 0.72 5.94 -51.93 -0.31 0.41 16 45 H 0.06 0.88 6.90 -51.93 -0.36 0.52 16 LS Contribution 409.05 15.07 6.16 6.16 Total: -1.00 -33.05 409.05 -7.75 -40.80 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -5.11 Total: -2.00 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: -5.58 Total: 4.50 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: 1.70 Total: -54.29 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.05 -7.75 -40.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126114510.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.732 kcal (2) G-P(sol) polarization free energy of solvation -33.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds