Wall clock time and date at job start Tue Mar 31 2020 05:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00035 * 2 1 4 4 H 1.48497 * 109.47640 * 240.00137 * 3 2 1 5 5 H 1.48503 * 109.46909 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46954 * 119.99604 * 3 2 1 7 7 C 1.37881 * 120.00520 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00284 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99600 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47081 * 180.02562 * 9 7 2 11 11 O 1.42903 * 109.47019 * 179.97438 * 10 9 7 12 12 C 1.35911 * 116.99476 * 179.97438 * 11 10 9 13 13 C 1.38727 * 120.06013 * 0.02562 * 12 11 10 14 14 C 1.38142 * 119.95078 * 179.97438 * 13 12 11 15 15 N 1.47997 * 119.96801 * 179.97438 * 14 13 12 16 16 O 1.21797 * 120.00449 * 359.97438 * 15 14 13 17 17 O 1.21802 * 119.99981 * 180.02562 * 15 14 13 18 18 C 1.38288 * 120.06191 * 359.97438 * 14 13 12 19 19 C 1.38241 * 120.11872 * 0.04235 * 18 14 13 20 20 C 1.38209 * 120.04826 * 359.95496 * 19 18 14 21 21 I 2.09505 * 120.03263 * 180.29512 * 20 19 18 22 22 H 0.96999 * 120.00346 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47287 * 59.99557 * 9 7 2 24 24 H 1.09004 * 109.46733 * 299.99351 * 9 7 2 25 25 H 1.09000 * 109.47211 * 59.99154 * 10 9 7 26 26 H 1.09004 * 109.46742 * 299.99266 * 10 9 7 27 27 H 1.07995 * 120.02677 * 359.95795 * 13 12 11 28 28 H 1.08007 * 119.94116 * 180.02562 * 18 14 13 29 29 H 1.08000 * 119.97261 * 179.97438 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 8 1.5309 -4.8996 0.0024 12 6 2.2712 -6.0394 0.0030 13 6 3.6567 -5.9681 0.0036 14 6 4.4070 -7.1280 0.0048 15 7 5.8850 -7.0524 0.0048 16 8 6.4394 -5.9679 0.0033 17 8 6.5471 -8.0748 0.0054 18 6 3.7783 -8.3597 0.0059 19 6 2.3978 -8.4339 0.0050 20 6 1.6426 -7.2765 0.0039 21 53 -0.4494 -7.3895 0.0119 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8896 24 1 0.6242 -2.5567 0.8904 25 1 2.8715 -3.6038 0.8922 26 1 2.8727 -3.6047 -0.8878 27 1 4.1483 -5.0065 0.0029 28 1 4.3668 -9.2654 0.0072 29 1 1.9093 -9.3971 0.0055 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128191616.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:05 Heat of formation + Delta-G solvation = -8.023198 kcal Electronic energy + Delta-G solvation = -17534.258874 eV Core-core repulsion = 14285.445858 eV Total energy + Delta-G solvation = -3248.813016 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 362.980 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.32530 -40.48085 -37.81717 -36.67072 -33.67335 -33.15389 -31.08802 -29.98916 -29.09504 -26.07804 -25.26584 -23.12628 -22.26963 -20.97613 -19.76885 -18.76184 -17.66074 -17.22605 -16.30723 -16.04341 -15.92544 -15.89065 -14.70291 -14.50692 -13.55770 -13.34541 -12.50810 -12.33905 -12.01154 -11.98896 -11.69303 -11.36629 -11.23973 -11.04495 -11.02800 -10.82750 -10.74318 -10.14736 -10.02094 -9.84825 -9.55071 -9.45121 -8.67001 -8.52996 -6.19572 -4.25493 -0.45155 0.71092 0.76622 1.12438 1.24402 2.92961 3.10923 3.24325 3.29224 3.32996 4.09064 4.30239 4.35707 4.38622 4.78131 4.95934 5.14973 5.17247 5.38661 5.49460 5.71150 5.71742 5.84512 6.21847 6.38411 7.08019 7.46009 7.48923 7.51647 7.78843 8.09421 8.79366 9.39949 10.91544 Molecular weight = 362.98amu Principal moments of inertia in cm(-1) A = 0.009097 B = 0.004513 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3077.245529 B = 6203.473226 C = 9260.267450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.899 3.101 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.532 4.532 8 H 0.059 0.941 9 C 0.030 3.970 10 C 0.055 3.945 11 O -0.288 6.288 12 C 0.182 3.818 13 C -0.150 4.150 14 C 0.013 3.987 15 N 0.025 4.975 16 O -0.150 6.150 17 O -0.157 6.157 18 C -0.106 4.106 19 C -0.045 4.045 20 C -0.110 4.110 21 I 0.005 6.995 22 H 0.265 0.735 23 H 0.031 0.969 24 H 0.031 0.969 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.168 0.832 28 H 0.159 0.841 29 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.076 -20.639 0.024 20.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.139 4.139 3 Si 0.726 3.274 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.570 4.570 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.019 4.019 11 O -0.199 6.199 12 C 0.130 3.870 13 C -0.172 4.172 14 C -0.070 4.070 15 N 0.546 4.454 16 O -0.368 6.368 17 O -0.373 6.373 18 C -0.127 4.127 19 C -0.066 4.066 20 C -0.251 4.251 21 I 0.154 6.846 22 H 0.075 0.925 23 H 0.049 0.951 24 H 0.049 0.951 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.185 0.815 28 H 0.176 0.824 29 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.647 -20.565 0.031 20.735 hybrid contribution 2.302 1.164 -0.006 2.580 sum -0.345 -19.401 0.025 19.404 Atomic orbital electron populations 1.69952 1.06115 1.27291 1.49145 1.24967 0.94906 0.99420 0.94645 0.86535 0.79519 0.82426 0.78871 1.19982 1.21065 1.19985 1.20893 0.93089 0.89984 1.53052 0.92247 1.19121 0.93910 0.88451 0.99227 1.23701 0.97720 0.79965 1.00479 1.86395 1.35430 1.12873 1.85206 1.18568 0.88531 0.88266 0.91672 1.21208 0.92901 0.99688 1.03369 1.20917 0.79376 0.96312 1.10377 1.43614 1.03514 1.00557 0.97706 1.94589 1.73159 1.16271 1.52763 1.94519 1.64409 1.25235 1.53126 1.20865 0.94722 0.96485 1.00619 1.20882 0.91864 0.97685 0.96198 1.24153 0.98804 0.92989 1.09199 1.96921 0.90547 1.98755 1.98408 0.92516 0.95102 0.95106 0.92229 0.92227 0.81456 0.82379 0.82678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 13.29 55.43 0.74 -24.77 15 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 15 3 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 15 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 15 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 7 C -0.53 -14.15 9.11 -34.44 -0.31 -14.46 15 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 15 9 C 0.03 0.73 5.34 -27.88 -0.15 0.58 15 10 C 0.05 1.04 4.68 37.16 0.17 1.22 15 11 O -0.29 -5.01 9.34 -19.46 -0.18 -5.19 15 12 C 0.18 2.64 6.67 -39.21 -0.26 2.38 15 13 C -0.15 -2.08 8.54 -39.44 -0.34 -2.42 15 14 C 0.01 0.17 6.85 -79.98 -0.55 -0.38 15 15 N 0.03 0.36 4.45 33.95 0.15 0.51 15 16 O -0.15 -2.35 18.45 -29.46 -0.54 -2.90 15 17 O -0.16 -2.20 18.44 -29.46 -0.54 -2.74 15 18 C -0.11 -1.06 9.55 -39.56 -0.38 -1.44 15 19 C -0.05 -0.42 9.75 -39.59 -0.39 -0.81 15 20 C -0.11 -1.35 6.21 -39.40 -0.24 -1.60 15 21 I 0.00 0.05 39.62 -73.02 -2.89 -2.84 15 22 H 0.27 7.20 8.31 -40.82 -0.34 6.86 15 23 H 0.03 0.80 8.14 -51.93 -0.42 0.38 15 24 H 0.03 0.80 8.14 -51.93 -0.42 0.38 15 25 H 0.06 1.08 7.66 -51.93 -0.40 0.68 15 26 H 0.06 1.08 7.66 -51.93 -0.40 0.68 15 27 H 0.17 2.37 5.85 -52.49 -0.31 2.06 15 28 H 0.16 1.22 7.61 -52.48 -0.40 0.82 15 29 H 0.16 0.99 8.06 -52.49 -0.42 0.57 15 LS Contribution 295.80 15.07 4.46 4.46 Total: -1.00 -28.58 295.80 -8.69 -37.27 By element: Atomic # 1 Polarization: -1.94 SS G_CDS: -2.31 Total: -4.25 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -2.54 Total: -15.29 kcal Atomic # 7 Polarization: -25.15 SS G_CDS: 0.89 Total: -24.26 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -1.27 Total: -10.83 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 53 Polarization: 0.05 SS G_CDS: -2.89 Total: -2.84 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.58 -8.69 -37.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128191616.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.251 kcal (2) G-P(sol) polarization free energy of solvation -28.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds