Wall clock time and date at job start Tue Mar 31 2020 06:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46935 * 2 1 4 4 C 1.50702 * 109.47375 * 119.99764 * 2 1 3 5 5 H 1.07997 * 119.99607 * 120.00021 * 4 2 1 6 6 C 1.37879 * 120.00095 * 300.00225 * 4 2 1 7 7 N 1.31516 * 119.99691 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99881 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46780 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47072 * 299.99697 * 8 6 4 11 11 H 1.48503 * 109.47262 * 59.99915 * 8 6 4 12 12 N 1.46496 * 109.47114 * 240.00020 * 2 1 3 13 13 C 1.46502 * 120.00005 * 299.99674 * 12 2 1 14 14 C 1.34780 * 120.00427 * 119.99857 * 12 2 1 15 15 O 1.21364 * 119.99329 * 356.43531 * 14 12 2 16 16 C 1.49314 * 120.00088 * 176.43920 * 14 12 2 17 17 O 1.21394 * 120.00571 * 5.92265 * 16 14 12 18 18 N 1.34783 * 119.99729 * 185.92904 * 16 14 12 19 19 C 1.39881 * 119.99878 * 175.31911 * 18 16 14 20 20 C 1.38923 * 119.99273 * 214.83296 * 19 18 16 21 21 C 1.38073 * 120.03472 * 179.72558 * 20 19 18 22 22 C 1.38840 * 120.02369 * 0.53873 * 21 20 19 23 23 N 1.40002 * 120.00254 * 179.74794 * 22 21 20 24 24 C 1.48530 * 111.00232 * 7.69218 * 23 22 21 25 25 C 1.54933 * 103.22816 * 159.72060 * 24 23 22 26 26 C 1.54591 * 102.92042 * 322.58196 * 25 24 23 27 27 C 1.47904 * 110.99803 * 125.08827 * 23 22 21 28 28 C 1.39087 * 119.99214 * 359.73463 * 22 21 20 29 29 F 1.35099 * 120.02007 * 179.97438 * 28 22 21 30 30 C 1.38199 * 119.96306 * 359.97438 * 28 22 21 31 31 H 1.09002 * 109.46580 * 300.00159 * 1 2 3 32 32 H 1.08988 * 109.47070 * 59.99958 * 1 2 3 33 33 H 1.09001 * 109.46737 * 180.02562 * 1 2 3 34 34 H 0.97005 * 119.99659 * 179.97438 * 7 6 4 35 35 H 1.09009 * 109.46977 * 95.97645 * 13 12 2 36 36 H 1.09004 * 109.47311 * 215.97722 * 13 12 2 37 37 H 1.08998 * 109.47014 * 335.98232 * 13 12 2 38 38 H 0.96998 * 120.00318 * 355.30823 * 18 16 14 39 39 H 1.08001 * 119.98337 * 359.96972 * 20 19 18 40 40 H 1.08002 * 119.98674 * 180.24959 * 21 20 19 41 41 H 1.09009 * 110.66655 * 278.15053 * 24 23 22 42 42 H 1.08998 * 110.67195 * 41.28032 * 24 23 22 43 43 H 1.09005 * 110.72540 * 204.22438 * 25 24 23 44 44 H 1.09000 * 110.72963 * 80.94322 * 25 24 23 45 45 H 1.09003 * 110.31218 * 263.04242 * 26 25 24 46 46 H 1.09006 * 110.30794 * 140.87561 * 26 25 24 47 47 H 1.09001 * 109.91727 * 333.50576 * 27 23 22 48 48 H 1.08996 * 109.91767 * 94.80148 * 27 23 22 49 49 H 1.07999 * 120.01545 * 179.97438 * 30 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1313 6 6 1.6994 -0.2393 2.4828 7 7 0.9436 0.8303 2.6034 8 14 2.3227 -1.1194 4.0079 9 1 1.8281 -0.4190 5.2204 10 1 1.8283 -2.5196 4.0082 11 1 3.8077 -1.1188 4.0077 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 6 2.7932 -0.0356 -2.0834 15 8 3.0331 1.1435 -1.9251 16 6 3.3563 -0.7607 -3.2610 17 8 3.0308 -1.9097 -3.4789 18 7 4.2263 -0.1395 -4.0819 19 6 4.8288 -0.8473 -5.1272 20 6 6.1363 -0.5591 -5.4980 21 6 6.7338 -1.2611 -6.5259 22 6 6.0247 -2.2480 -7.1973 23 7 6.6292 -2.9558 -8.2430 24 6 8.0736 -2.6248 -8.3448 25 6 8.6572 -3.8232 -9.1345 26 6 7.8546 -5.0240 -8.5835 27 6 6.5657 -4.4138 -8.0024 28 6 4.7137 -2.5334 -6.8308 29 9 4.0229 -3.4933 -7.4840 30 6 4.1180 -1.8347 -5.7979 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 0.7090 1.1615 3.4844 35 1 0.7982 -2.1451 -2.0876 36 1 2.5058 -2.6083 -1.8917 37 1 1.4261 -2.5697 -0.4771 38 1 4.4344 0.7984 -3.9480 39 1 6.6870 0.2117 -4.9793 40 1 7.7517 -1.0392 -6.8108 41 1 8.2173 -1.6948 -8.8951 42 1 8.5243 -2.5605 -7.3544 43 1 9.7205 -3.9416 -8.9259 44 1 8.4841 -3.7016 -10.2038 45 1 8.4200 -5.5299 -7.8008 46 1 7.6146 -5.7197 -9.3877 47 1 6.5112 -4.6114 -6.9318 48 1 5.6955 -4.8355 -8.5053 49 1 3.1000 -2.0554 -5.5128 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131956124.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:53 Heat of formation + Delta-G solvation = -53.169347 kcal Electronic energy + Delta-G solvation = -32583.944442 eV Core-core repulsion = 28040.649569 eV Total energy + Delta-G solvation = -4543.294873 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 363.175 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.95932 -41.02305 -40.20819 -38.71477 -37.55733 -35.87617 -34.71018 -32.82715 -32.29056 -31.07080 -29.58427 -29.34151 -28.19561 -26.28928 -25.32607 -24.76471 -23.69082 -22.76098 -21.49613 -21.14693 -20.52475 -19.38394 -18.29020 -17.50114 -17.31198 -16.66368 -16.45577 -16.34347 -16.16954 -15.71933 -15.57376 -15.44192 -15.07165 -14.65883 -14.41226 -14.28534 -13.96744 -13.72166 -13.44417 -13.32973 -13.19633 -12.90498 -12.58579 -12.42685 -12.35654 -12.30594 -12.00187 -11.77323 -11.66630 -11.62890 -11.41328 -11.14050 -11.01123 -10.91323 -10.81453 -10.76195 -10.51457 -10.33694 -10.23801 -9.52621 -9.28155 -9.09310 -8.82921 -8.50104 -7.89982 -7.76698 -6.15438 -4.24162 0.79631 0.97183 1.80260 2.56322 3.19607 3.24701 3.29611 3.31846 3.50330 3.63256 3.89821 4.09853 4.11245 4.22011 4.33580 4.52292 4.53410 4.72379 4.79113 4.81009 4.96258 5.01669 5.14857 5.16173 5.24829 5.32954 5.36569 5.47984 5.52944 5.57723 5.66467 5.73610 5.81400 5.94029 6.00542 6.13439 6.20066 6.39498 6.46519 6.59567 6.66580 6.72152 6.89125 6.93164 7.04045 7.21724 7.35107 7.61451 7.79138 7.93101 8.04818 8.29561 8.53461 8.80791 9.42035 10.89916 Molecular weight = 363.17amu Principal moments of inertia in cm(-1) A = 0.019144 B = 0.001939 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.238645 B =14433.696183 C =14596.178518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.255 3.745 3 H 0.067 0.933 4 C -0.530 4.530 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.902 3.098 9 H -0.285 1.285 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.549 5.549 13 C 0.068 3.932 14 C 0.494 3.506 15 O -0.536 6.536 16 C 0.509 3.491 17 O -0.498 6.498 18 N -0.650 5.650 19 C 0.155 3.845 20 C -0.126 4.126 21 C -0.121 4.121 22 C 0.051 3.949 23 N -0.465 5.465 24 C 0.029 3.971 25 C -0.124 4.124 26 C -0.131 4.131 27 C 0.035 3.965 28 C 0.099 3.901 29 F -0.132 7.132 30 C -0.134 4.134 31 H 0.097 0.903 32 H 0.013 0.987 33 H 0.033 0.967 34 H 0.265 0.735 35 H 0.048 0.952 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.425 0.575 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.090 0.910 42 H 0.062 0.938 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.054 0.946 48 H 0.089 0.911 49 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.539 -7.306 -21.837 26.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.155 3.845 3 H 0.085 0.915 4 C -0.569 4.569 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.730 3.270 9 H -0.211 1.211 10 H -0.201 1.201 11 H -0.202 1.202 12 N -0.279 5.279 13 C -0.075 4.075 14 C 0.274 3.726 15 O -0.416 6.416 16 C 0.293 3.707 17 O -0.373 6.373 18 N -0.297 5.297 19 C 0.060 3.940 20 C -0.147 4.147 21 C -0.143 4.143 22 C -0.048 4.048 23 N -0.181 5.181 24 C -0.097 4.097 25 C -0.162 4.162 26 C -0.170 4.170 27 C -0.090 4.090 28 C 0.077 3.923 29 F -0.110 7.110 30 C -0.155 4.155 31 H 0.115 0.885 32 H 0.032 0.968 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.264 0.736 39 H 0.155 0.845 40 H 0.159 0.841 41 H 0.108 0.892 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.090 0.910 46 H 0.095 0.905 47 H 0.072 0.928 48 H 0.108 0.892 49 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 12.979 -7.334 -22.185 26.728 hybrid contribution 0.509 -0.366 1.501 1.627 sum 13.488 -7.700 -20.684 25.866 Atomic orbital electron populations 1.22088 0.97489 0.99841 1.01080 1.19188 0.91436 0.94575 0.79276 0.91537 1.21233 1.32369 1.13276 0.89988 0.92036 1.24890 0.94820 0.94961 0.99007 1.69867 1.35984 1.22416 1.24088 0.86493 0.79236 0.79612 0.81705 1.21096 1.20112 1.20190 1.48286 1.45074 1.12688 1.21868 1.22196 1.01416 0.81855 1.02052 1.19526 0.81988 0.87213 0.83842 1.90726 1.60398 1.15013 1.75413 1.21030 0.79046 0.86658 0.83954 1.90655 1.57573 1.17246 1.71777 1.43268 1.43525 1.15070 1.27864 1.17390 0.91719 0.95314 0.89585 1.20893 0.92623 1.02059 0.99093 1.20892 0.99932 0.97464 0.95968 1.19070 0.93156 0.99250 0.93311 1.61986 1.13794 1.05229 1.37100 1.23477 0.86264 0.99797 1.00202 1.22503 0.99406 0.93746 1.00578 1.22433 0.95464 0.98117 1.00935 1.23034 0.99610 0.86014 1.00385 1.17000 0.89296 0.91249 0.94748 1.91482 1.78847 1.60938 1.79762 1.21158 1.02249 0.97568 0.94556 0.88496 0.96773 0.94805 0.92466 0.93386 0.89294 0.90371 0.73637 0.84527 0.84102 0.89175 0.92030 0.90487 0.90436 0.91049 0.90550 0.92761 0.89237 0.82658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 8.97 37.16 0.33 -3.12 16 2 C 0.25 6.37 2.63 -69.08 -0.18 6.19 16 3 H 0.07 1.88 6.90 -51.93 -0.36 1.52 16 4 C -0.53 -14.03 7.95 -34.44 -0.27 -14.30 16 5 H 0.06 1.61 7.43 -52.49 -0.39 1.22 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.40 11.32 55.43 0.63 -23.77 16 8 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 9 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.55 -11.86 2.75 -175.82 -0.48 -12.34 16 13 C 0.07 1.26 8.49 59.85 0.51 1.77 16 14 C 0.49 10.03 7.73 -11.65 -0.09 9.94 16 15 O -0.54 -11.97 15.82 5.48 0.09 -11.89 16 16 C 0.51 8.54 7.61 -11.65 -0.09 8.45 16 17 O -0.50 -8.65 10.57 5.46 0.06 -8.59 16 18 N -0.65 -8.78 5.33 -10.27 -0.05 -8.83 16 19 C 0.16 1.93 6.30 -83.68 -0.53 1.40 16 20 C -0.13 -1.23 9.96 -39.39 -0.39 -1.63 16 21 C -0.12 -1.11 8.80 -39.42 -0.35 -1.46 16 22 C 0.05 0.56 5.46 -83.59 -0.46 0.10 16 23 N -0.47 -4.46 5.30 -167.03 -0.88 -5.35 16 24 C 0.03 0.19 5.18 -1.90 -0.01 0.18 16 25 C -0.12 -0.68 7.06 -24.87 -0.18 -0.85 16 26 C -0.13 -0.81 6.93 -25.38 -0.18 -0.99 16 27 C 0.04 0.31 5.42 -2.75 -0.01 0.29 16 28 C 0.10 1.26 6.92 -39.28 -0.27 0.98 16 29 F -0.13 -1.75 15.44 2.25 0.03 -1.72 16 30 C -0.13 -1.79 8.67 -39.34 -0.34 -2.14 16 31 H 0.10 2.48 6.07 -51.93 -0.32 2.17 16 32 H 0.01 0.30 8.14 -51.94 -0.42 -0.13 16 33 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 34 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.05 0.83 8.14 -51.92 -0.42 0.40 16 36 H 0.09 1.59 5.36 -51.93 -0.28 1.32 16 37 H 0.08 1.49 7.12 -51.93 -0.37 1.12 16 38 H 0.43 5.07 8.30 -40.82 -0.34 4.73 16 39 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 40 H 0.14 0.92 5.93 -52.49 -0.31 0.61 16 41 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 42 H 0.06 0.38 6.57 -51.93 -0.34 0.04 16 43 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.05 0.52 7.68 -51.93 -0.40 0.12 16 48 H 0.09 0.83 7.46 -51.93 -0.39 0.44 16 49 H 0.16 2.28 6.22 -52.49 -0.33 1.96 16 LS Contribution 392.83 15.07 5.92 5.92 Total: -1.00 -30.13 392.83 -9.05 -39.17 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.73 Total: 5.24 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: -2.60 Total: 6.50 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: -0.80 Total: -50.29 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: 0.14 Total: -20.48 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.03 Total: -1.72 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.13 -9.05 -39.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131956124.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.997 kcal (2) G-P(sol) polarization free energy of solvation -30.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds