Wall clock time and date at job start Tue Mar 31 2020 06:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47655 * 2 1 4 4 C 1.50703 * 109.46698 * 240.00239 * 2 1 3 5 5 H 1.08009 * 119.99982 * 245.16311 * 4 2 1 6 6 C 1.37878 * 119.99876 * 65.16493 * 4 2 1 7 7 N 1.31518 * 119.99562 * 184.79448 * 6 4 2 8 8 Si 1.86800 * 120.00162 * 5.07162 * 6 4 2 9 9 H 1.48496 * 109.46952 * 269.72526 * 8 6 4 10 10 H 1.48498 * 109.47178 * 29.72499 * 8 6 4 11 11 H 1.48499 * 109.46846 * 149.72914 * 8 6 4 12 12 N 1.46503 * 109.47003 * 120.00566 * 2 1 3 13 13 C 1.46494 * 119.99913 * 59.99770 * 12 2 1 14 14 C 1.34775 * 119.99638 * 239.99636 * 12 2 1 15 15 O 1.21363 * 120.00514 * 5.81892 * 14 12 2 16 16 C 1.49320 * 119.99647 * 185.82210 * 14 12 2 17 17 O 1.21398 * 120.00250 * 5.43919 * 16 14 12 18 18 N 1.34778 * 119.99953 * 185.44589 * 16 14 12 19 19 C 1.39883 * 119.99987 * 185.24287 * 18 16 14 20 20 C 1.38923 * 119.99664 * 214.57209 * 19 18 16 21 21 C 1.38074 * 120.03811 * 179.72485 * 20 19 18 22 22 C 1.38839 * 120.02181 * 0.54915 * 21 20 19 23 23 N 1.40003 * 120.00652 * 179.74679 * 22 21 20 24 24 C 1.48533 * 110.99542 * 7.64921 * 23 22 21 25 25 C 1.54937 * 103.22462 * 159.72273 * 24 23 22 26 26 C 1.54597 * 102.92051 * 322.58641 * 25 24 23 27 27 C 1.47895 * 111.00113 * 125.04599 * 23 22 21 28 28 C 1.39097 * 119.99156 * 359.72729 * 22 21 20 29 29 F 1.35095 * 120.01702 * 179.97438 * 28 22 21 30 30 C 1.38196 * 119.96162 * 359.97438 * 28 22 21 31 31 H 1.08991 * 109.47422 * 174.95843 * 1 2 3 32 32 H 1.09002 * 109.46819 * 294.96063 * 1 2 3 33 33 H 1.09004 * 109.46961 * 54.95395 * 1 2 3 34 34 H 0.97001 * 119.99907 * 355.27916 * 7 6 4 35 35 H 1.08996 * 109.47537 * 95.61771 * 13 12 2 36 36 H 1.09006 * 109.46656 * 215.61310 * 13 12 2 37 37 H 1.09000 * 109.47304 * 335.61050 * 13 12 2 38 38 H 0.97000 * 120.00294 * 5.23334 * 18 16 14 39 39 H 1.08002 * 119.98062 * 359.97438 * 20 19 18 40 40 H 1.08000 * 119.99005 * 180.27478 * 21 20 19 41 41 H 1.09002 * 110.66968 * 278.15234 * 24 23 22 42 42 H 1.09000 * 110.67302 * 41.29001 * 24 23 22 43 43 H 1.09003 * 110.72314 * 204.23142 * 25 24 23 44 44 H 1.08993 * 110.72856 * 80.94605 * 25 24 23 45 45 H 1.09005 * 110.30883 * 263.04035 * 26 25 24 46 46 H 1.08998 * 110.30860 * 140.87580 * 26 25 24 47 47 H 1.09003 * 109.91635 * 333.51266 * 27 23 22 48 48 H 1.09003 * 109.91731 * 94.80602 * 27 23 22 49 49 H 1.08010 * 120.01164 * 179.97438 * 30 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.5826 -1.6346 -1.1337 6 6 1.7891 -0.1804 -2.4800 7 7 2.1440 -0.8464 -3.5571 8 14 0.9627 1.4869 -2.6427 9 1 -0.5094 1.3049 -2.7130 10 1 1.3022 2.3247 -1.4646 11 1 1.4383 2.1564 -3.8799 12 7 2.0183 -0.6907 1.1961 13 6 1.6643 -2.0933 1.4278 14 6 2.7932 -0.0358 2.0833 15 8 2.9998 1.1524 1.9477 16 6 3.3977 -0.7722 3.2331 17 8 3.2736 -1.9770 3.3150 18 7 4.0809 -0.0992 4.1800 19 6 4.7397 -0.7983 5.1969 20 6 4.8144 -0.2586 6.4749 21 6 5.4596 -0.9505 7.4806 22 6 6.0442 -2.1810 7.2128 23 7 6.7029 -2.8798 8.2316 24 6 6.5004 -2.2196 9.5467 25 6 6.8106 -3.3486 10.5615 26 6 6.2232 -4.6024 9.8739 27 6 6.1548 -4.2457 8.3775 28 6 5.9750 -2.7197 5.9323 29 9 6.5441 -3.9167 5.6710 30 6 5.3238 -2.0296 4.9275 31 1 -0.3634 -1.0236 -0.0903 32 1 -0.3633 0.4337 0.9317 33 1 -0.3633 0.5901 -0.8414 34 1 2.6376 -1.6772 -3.4730 35 1 2.4643 -2.7356 1.0596 36 1 1.5260 -2.2614 2.4959 37 1 0.7393 -2.3264 0.9006 38 1 4.1160 0.8699 4.1564 39 1 4.3641 0.7007 6.6828 40 1 5.5134 -0.5323 8.4749 41 1 7.1951 -1.3890 9.6712 42 1 5.4701 -1.8800 9.6521 43 1 6.3114 -3.1605 11.5121 44 1 7.8859 -3.4548 10.7036 45 1 5.2252 -4.8124 10.2588 46 1 6.8774 -5.4603 10.0288 47 1 5.1195 -4.2687 8.0371 48 1 6.7539 -4.9499 7.8001 49 1 5.2700 -2.4469 3.9327 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131956321.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:57 Heat of formation + Delta-G solvation = -55.132322 kcal Electronic energy + Delta-G solvation = -32648.808710 eV Core-core repulsion = 28105.428716 eV Total energy + Delta-G solvation = -4543.379994 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 363.175 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.99087 -41.08563 -40.26897 -38.84246 -37.64071 -36.04648 -34.79981 -32.81691 -32.33321 -31.12278 -30.38144 -29.37650 -28.26355 -26.46536 -25.19970 -24.60969 -23.71381 -22.81540 -21.51823 -21.18189 -20.49848 -19.33147 -18.35271 -17.69958 -17.50511 -17.25011 -16.70794 -16.48402 -16.27562 -15.82647 -15.62581 -15.57798 -15.04549 -14.74030 -14.33086 -14.12366 -14.02871 -13.78858 -13.49705 -13.37605 -13.21817 -12.94939 -12.88418 -12.65176 -12.41995 -12.37903 -12.12736 -11.92099 -11.80108 -11.78063 -11.67333 -11.48020 -11.41505 -11.04206 -10.98806 -10.64763 -10.61091 -10.10113 -9.80215 -9.57348 -9.19396 -9.01983 -8.95259 -8.57949 -8.04187 -7.88590 -6.54407 -4.24131 0.74191 0.92110 1.70593 2.46307 3.14332 3.29966 3.41228 3.43612 3.53453 3.54157 3.76380 4.05121 4.08116 4.18369 4.38194 4.45955 4.50013 4.59856 4.74136 4.76905 4.91463 4.98113 5.10912 5.18315 5.20192 5.30016 5.33736 5.43561 5.49175 5.54927 5.63338 5.68569 5.77197 5.79248 5.88297 6.00846 6.12768 6.15601 6.26091 6.33965 6.37095 6.41680 6.47499 6.75401 6.80967 6.87681 7.04816 7.15010 7.62237 7.75103 8.02940 8.24989 8.37188 8.77387 9.46743 10.83969 Molecular weight = 363.17amu Principal moments of inertia in cm(-1) A = 0.025022 B = 0.001951 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.745222 B =14344.708374 C =14799.571194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.225 3.775 3 H 0.066 0.934 4 C -0.606 4.606 5 H 0.064 0.936 6 C 0.034 3.966 7 N -0.904 5.904 8 Si 1.050 2.950 9 H -0.281 1.281 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.546 5.546 13 C 0.086 3.914 14 C 0.496 3.504 15 O -0.536 6.536 16 C 0.508 3.492 17 O -0.495 6.495 18 N -0.650 5.650 19 C 0.158 3.842 20 C -0.126 4.126 21 C -0.121 4.121 22 C 0.052 3.948 23 N -0.465 5.465 24 C 0.029 3.971 25 C -0.124 4.124 26 C -0.131 4.131 27 C 0.035 3.965 28 C 0.102 3.898 29 F -0.131 7.131 30 C -0.133 4.133 31 H 0.056 0.944 32 H 0.033 0.967 33 H 0.057 0.943 34 H 0.269 0.731 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.425 0.575 39 H 0.137 0.863 40 H 0.142 0.858 41 H 0.090 0.910 42 H 0.061 0.939 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.054 0.946 48 H 0.090 0.910 49 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.887 -2.572 29.044 29.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.124 3.876 3 H 0.083 0.917 4 C -0.644 4.644 5 H 0.082 0.918 6 C -0.172 4.172 7 N -0.537 5.537 8 Si 0.878 3.122 9 H -0.208 1.208 10 H -0.200 1.200 11 H -0.213 1.213 12 N -0.276 5.276 13 C -0.057 4.057 14 C 0.277 3.723 15 O -0.415 6.415 16 C 0.292 3.708 17 O -0.368 6.368 18 N -0.298 5.298 19 C 0.062 3.938 20 C -0.147 4.147 21 C -0.142 4.142 22 C -0.047 4.047 23 N -0.181 5.181 24 C -0.097 4.097 25 C -0.162 4.162 26 C -0.169 4.169 27 C -0.091 4.091 28 C 0.080 3.920 29 F -0.109 7.109 30 C -0.154 4.154 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.263 0.737 39 H 0.154 0.846 40 H 0.159 0.841 41 H 0.108 0.892 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.089 0.911 46 H 0.095 0.905 47 H 0.072 0.928 48 H 0.108 0.892 49 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.857 -1.867 27.681 28.355 hybrid contribution 0.055 -1.019 0.991 1.423 sum 5.913 -2.886 28.672 29.417 Atomic orbital electron populations 1.22415 0.98331 1.01545 0.99467 1.19640 0.90741 0.95297 0.81913 0.91671 1.22229 1.40497 1.11023 0.90680 0.91825 1.25727 0.96448 1.03411 0.91627 1.70817 1.35902 1.16904 1.30125 0.83944 0.76297 0.75645 0.76274 1.20794 1.20001 1.21273 1.47968 1.45408 1.12787 1.21437 1.21924 1.01226 0.81129 1.01395 1.19581 0.81817 0.87219 0.83710 1.90720 1.61091 1.14354 1.75336 1.20847 0.78854 0.87807 0.83313 1.90750 1.56592 1.14116 1.75367 1.43253 1.49834 1.11606 1.25112 1.17342 0.95328 0.93082 0.88004 1.20854 1.01934 1.01562 0.90374 1.20893 0.98711 0.94713 0.99874 1.19064 0.98062 0.96011 0.91584 1.61979 1.49568 1.02985 1.03556 1.23478 1.01033 0.97932 0.87281 1.22505 1.02002 0.93942 0.97790 1.22432 1.01719 0.98753 0.94033 1.23037 0.99198 0.89434 0.97388 1.16964 0.99385 0.83337 0.92326 1.91489 1.82613 1.42405 1.94419 1.20999 0.98302 0.95715 1.00395 0.92477 0.94780 0.92466 0.92094 0.92440 0.90737 0.91001 0.73686 0.84563 0.84059 0.89156 0.92052 0.90479 0.90408 0.91055 0.90520 0.92769 0.89204 0.83249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 8.67 37.16 0.32 -3.00 16 2 C 0.23 5.33 2.20 -69.08 -0.15 5.18 16 3 H 0.07 1.66 5.43 -51.93 -0.28 1.38 16 4 C -0.61 -16.53 8.77 -34.44 -0.30 -16.83 16 5 H 0.06 1.87 7.79 -52.48 -0.41 1.46 16 6 C 0.03 0.95 5.43 -17.82 -0.10 0.85 16 7 N -0.90 -27.18 13.70 55.43 0.76 -26.42 16 8 Si 1.05 24.89 25.27 -169.99 -4.29 20.59 16 9 H -0.28 -6.21 6.82 56.52 0.39 -5.83 16 10 H -0.27 -6.21 6.36 56.52 0.36 -5.85 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 N -0.55 -11.47 2.75 -175.82 -0.48 -11.96 16 13 C 0.09 1.58 8.37 59.84 0.50 2.08 16 14 C 0.50 9.77 7.72 -11.65 -0.09 9.68 16 15 O -0.54 -11.45 15.85 5.49 0.09 -11.36 16 16 C 0.51 8.37 7.43 -11.65 -0.09 8.29 16 17 O -0.50 -8.62 11.17 5.45 0.06 -8.56 16 18 N -0.65 -8.52 5.32 -10.27 -0.05 -8.58 16 19 C 0.16 1.92 6.25 -83.68 -0.52 1.40 16 20 C -0.13 -1.17 9.96 -39.39 -0.39 -1.56 16 21 C -0.12 -1.06 8.80 -39.42 -0.35 -1.40 16 22 C 0.05 0.55 5.46 -83.58 -0.46 0.10 16 23 N -0.47 -4.40 5.30 -167.03 -0.88 -5.28 16 24 C 0.03 0.19 5.18 -1.90 -0.01 0.18 16 25 C -0.12 -0.65 7.06 -24.87 -0.18 -0.83 16 26 C -0.13 -0.78 6.93 -25.38 -0.18 -0.96 16 27 C 0.03 0.30 5.42 -2.76 -0.01 0.29 16 28 C 0.10 1.30 6.92 -39.28 -0.27 1.03 16 29 F -0.13 -1.77 15.44 2.25 0.03 -1.74 16 30 C -0.13 -1.80 8.62 -39.34 -0.34 -2.14 16 31 H 0.06 1.14 6.87 -51.93 -0.36 0.78 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 1.20 4.37 -51.93 -0.23 0.97 16 34 H 0.27 8.08 8.72 -40.82 -0.36 7.72 16 35 H 0.06 1.10 8.09 -51.93 -0.42 0.68 16 36 H 0.07 1.24 6.00 -51.93 -0.31 0.93 16 37 H 0.07 1.28 6.54 -51.93 -0.34 0.94 16 38 H 0.42 4.80 8.32 -40.82 -0.34 4.46 16 39 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.14 0.86 5.93 -52.49 -0.31 0.55 16 41 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.35 6.57 -51.93 -0.34 0.01 16 43 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.05 0.51 7.68 -51.93 -0.40 0.11 16 48 H 0.09 0.84 7.47 -51.93 -0.39 0.45 16 49 H 0.15 2.28 6.52 -52.48 -0.34 1.94 16 LS Contribution 387.44 15.07 5.84 5.84 Total: -1.00 -32.08 387.44 -8.18 -40.26 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -6.64 Total: 4.85 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -2.61 Total: 2.36 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: -0.66 Total: -52.24 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: 0.15 Total: -19.92 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.03 Total: -1.74 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -4.29 Total: 20.59 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.08 -8.18 -40.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131956321.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.868 kcal (2) G-P(sol) polarization free energy of solvation -32.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds