Wall clock time and date at job start Tue Mar 31 2020 04:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35988 * 116.99981 * 2 1 4 4 C 1.38973 * 119.10206 * 359.97438 * 3 2 1 5 5 C 1.38332 * 122.22041 * 180.02562 * 4 3 2 6 6 C 1.39316 * 117.14243 * 359.97438 * 5 4 3 7 7 N 1.37847 * 132.03172 * 179.97438 * 6 5 4 8 8 H 0.96995 * 125.23053 * 0.05715 * 7 6 5 9 9 C 1.37016 * 109.65158 * 179.97438 * 7 6 5 10 10 C 1.35437 * 109.67272 * 0.07035 * 9 7 6 11 11 C 1.41814 * 120.75722 * 359.97438 * 6 5 4 12 12 C 1.38704 * 119.10420 * 180.02562 * 3 2 1 13 13 C 1.50765 * 124.12452 * 180.02562 * 10 9 7 14 14 C 1.53326 * 108.70986 * 16.67176 * 13 10 9 15 15 H 1.09002 * 109.50233 * 70.07456 * 14 13 10 16 16 N 1.46498 * 109.50321 * 190.15029 * 14 13 10 17 17 C 1.38855 * 119.99920 * 204.99662 * 16 14 13 18 18 C 1.39574 * 119.84423 * 359.73351 * 17 16 14 19 19 C 1.36332 * 120.16114 * 179.71807 * 18 17 16 20 20 C 1.40893 * 119.83681 * 0.54896 * 19 18 17 21 21 C 1.41139 * 120.15502 * 179.70372 * 20 19 18 22 22 H 1.08003 * 119.99639 * 204.62764 * 21 20 19 23 23 C 1.39863 * 120.00139 * 24.62003 * 21 20 19 24 24 N 1.30906 * 119.99837 * 17.96609 * 23 21 20 25 25 Si 1.86798 * 120.00027 * 197.96724 * 23 21 20 26 26 H 1.48500 * 109.47092 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47012 * 120.00153 * 25 23 21 28 28 H 1.48503 * 109.47054 * 240.00209 * 25 23 21 29 29 C 1.40886 * 119.68644 * 359.71891 * 20 19 18 30 30 C 1.36332 * 119.83647 * 0.02562 * 29 20 19 31 31 C 1.53138 * 109.29523 * 310.13564 * 14 13 10 32 32 C 1.51063 * 126.49027 * 180.14263 * 9 7 6 33 33 H 1.09000 * 109.47414 * 59.99542 * 1 2 3 34 34 H 1.09002 * 109.47269 * 180.02562 * 1 2 3 35 35 H 1.09005 * 109.47227 * 299.99572 * 1 2 3 36 36 H 1.08005 * 118.88625 * 0.02562 * 4 3 2 37 37 H 1.08005 * 121.42904 * 179.97438 * 5 4 3 38 38 H 1.08007 * 121.62597 * 359.96728 * 12 3 2 39 39 H 1.09000 * 109.62275 * 256.85941 * 13 10 9 40 40 H 1.08999 * 109.62564 * 136.48812 * 13 10 9 41 41 H 0.97001 * 120.00206 * 25.00190 * 16 14 13 42 42 H 1.07999 * 119.91492 * 359.97149 * 18 17 16 43 43 H 1.08003 * 120.08553 * 180.27513 * 19 18 17 44 44 H 0.97000 * 119.99525 * 179.97438 * 24 23 21 45 45 H 1.07998 * 120.07971 * 179.97438 * 29 20 19 46 46 H 1.08004 * 119.92090 * 179.97438 * 30 29 20 47 47 H 1.09001 * 109.47977 * 190.05466 * 31 14 13 48 48 H 1.09005 * 109.47205 * 310.06291 * 31 14 13 49 49 H 1.09003 * 109.61759 * 77.04098 * 32 9 7 50 50 H 1.09007 * 109.75799 * 316.59942 * 32 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2713 2.3652 -0.0005 5 6 1.8313 3.6301 -0.0011 6 6 3.2222 3.7093 -0.0005 7 7 4.0854 4.7840 -0.0013 8 1 3.8181 5.7164 -0.0016 9 6 5.3800 4.3353 0.0004 10 6 5.3931 2.9810 0.0006 11 6 4.0156 2.5339 0.0011 12 6 3.4324 1.2626 -0.0005 13 6 6.6492 2.1473 0.0029 14 6 7.8276 3.0345 0.4213 15 1 7.7356 3.2875 1.4776 16 7 9.0845 2.3157 0.1982 17 6 10.2129 2.6442 0.9377 18 6 10.1475 3.6636 1.8888 19 6 11.2499 3.9876 2.6226 20 6 12.4603 3.2985 2.4107 21 6 13.6074 3.6327 3.1621 22 1 14.5909 3.4238 2.7678 23 6 13.4704 4.2344 4.4172 24 7 12.3265 4.1734 5.0509 25 14 14.9195 5.1250 5.1892 26 1 16.0889 5.0514 4.2768 27 1 14.5607 6.5475 5.4195 28 1 15.2609 4.4846 6.4849 29 6 12.5204 2.2744 1.4449 30 6 11.4087 1.9576 0.7222 31 6 7.8165 4.3178 -0.4143 32 6 6.6266 5.1885 0.0032 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3634 -1.0277 0.0005 35 1 -0.3634 0.5138 0.8901 36 1 0.1953 2.2708 -0.0005 37 1 1.2166 4.5181 -0.0019 38 1 4.0322 0.3643 -0.0004 39 1 6.8268 1.7502 -0.9965 40 1 6.5414 1.3246 0.7097 41 1 9.1285 1.6103 -0.4662 42 1 9.2202 4.1942 2.0468 43 1 11.1967 4.7737 3.3613 44 1 12.2317 4.5904 5.9215 45 1 13.4451 1.7423 1.2770 46 1 11.4533 1.1731 -0.0187 47 1 8.7439 4.8666 -0.2500 48 1 7.7273 4.0630 -1.4704 49 1 6.7969 5.5843 1.0045 50 1 6.5108 6.0125 -0.7010 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133167529.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:21 Heat of formation + Delta-G solvation = 34.712029 kcal Electronic energy + Delta-G solvation = -30779.660861 eV Core-core repulsion = 26736.371946 eV Total energy + Delta-G solvation = -4043.288915 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 362.174 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.56338 -39.56822 -38.32419 -36.85797 -35.56763 -33.92042 -32.52644 -32.19837 -30.42667 -29.43500 -29.01876 -28.22479 -27.54558 -26.82000 -24.41279 -24.11125 -22.19042 -21.78276 -21.22120 -20.89855 -19.75435 -18.74331 -17.96391 -17.56451 -17.18246 -16.42762 -15.97593 -15.90077 -15.64486 -15.32612 -14.89937 -14.56778 -14.21159 -14.02390 -13.80374 -13.64226 -13.47496 -13.01535 -12.96180 -12.80241 -12.63597 -12.52539 -12.31745 -12.08989 -12.05810 -11.91406 -11.70582 -11.50210 -11.42710 -11.02453 -10.98735 -10.84659 -10.69226 -10.59514 -10.38594 -10.34333 -9.66333 -9.61994 -9.25426 -9.16593 -8.51406 -7.92711 -7.50106 -7.45573 -6.61520 -6.35089 -4.00240 0.85788 1.49390 2.53519 2.92398 2.92864 3.13360 3.16859 3.18286 3.22216 3.37517 3.69679 4.07484 4.23956 4.50491 4.54011 4.73808 4.78690 4.81195 4.88630 4.94952 5.03157 5.03458 5.09362 5.19520 5.24633 5.39882 5.51679 5.54856 5.59333 5.72993 5.77760 5.85538 5.87797 5.97866 6.03696 6.15997 6.24185 6.29282 6.30686 6.37792 6.43870 6.52818 6.74219 6.92577 6.97265 6.99885 7.23509 7.28801 7.38953 7.41891 7.60088 7.72710 7.88163 8.18586 8.33207 8.53651 8.74880 8.84501 9.09209 9.18736 10.39938 Molecular weight = 362.17amu Principal moments of inertia in cm(-1) A = 0.017479 B = 0.001798 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.496035 B =15571.478587 C =15844.238051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.094 3.906 4 C -0.188 4.188 5 C -0.090 4.090 6 C 0.065 3.935 7 N -0.591 5.591 8 H 0.414 0.586 9 C 0.091 3.909 10 C -0.170 4.170 11 C -0.055 4.055 12 C -0.105 4.105 13 C -0.048 4.048 14 C 0.166 3.834 15 H 0.076 0.924 16 N -0.755 5.755 17 C 0.095 3.905 18 C -0.165 4.165 19 C -0.124 4.124 20 C 0.073 3.927 21 C -0.466 4.466 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.808 5.808 25 Si 0.901 3.099 26 H -0.263 1.263 27 H -0.275 1.275 28 H -0.277 1.277 29 C -0.186 4.186 30 C -0.160 4.160 31 C -0.129 4.129 32 C -0.057 4.057 33 H 0.052 0.948 34 H 0.096 0.904 35 H 0.052 0.948 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.137 0.863 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.384 0.616 42 H 0.089 0.911 43 H 0.117 0.883 44 H 0.275 0.725 45 H 0.090 0.910 46 H 0.086 0.914 47 H 0.081 0.919 48 H 0.064 0.936 49 H 0.085 0.915 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.980 0.240 -10.199 25.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.236 6.236 3 C 0.049 3.951 4 C -0.208 4.208 5 C -0.111 4.111 6 C -0.041 4.041 7 N -0.194 5.194 8 H 0.250 0.750 9 C -0.017 4.017 10 C -0.177 4.177 11 C -0.060 4.060 12 C -0.124 4.124 13 C -0.086 4.086 14 C 0.059 3.941 15 H 0.094 0.906 16 N -0.389 5.389 17 C -0.001 4.001 18 C -0.186 4.186 19 C -0.144 4.144 20 C 0.070 3.930 21 C -0.498 4.498 22 H 0.090 0.910 23 C -0.141 4.141 24 N -0.435 5.435 25 Si 0.726 3.274 26 H -0.186 1.186 27 H -0.200 1.200 28 H -0.203 1.203 29 C -0.206 4.206 30 C -0.182 4.182 31 C -0.169 4.169 32 C -0.095 4.095 33 H 0.070 0.930 34 H 0.115 0.885 35 H 0.071 0.929 36 H 0.143 0.857 37 H 0.147 0.853 38 H 0.155 0.845 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.216 0.784 42 H 0.107 0.893 43 H 0.135 0.865 44 H 0.086 0.914 45 H 0.109 0.891 46 H 0.104 0.896 47 H 0.100 0.900 48 H 0.083 0.917 49 H 0.103 0.897 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -23.105 0.361 -9.873 25.129 hybrid contribution 0.019 0.809 0.276 0.855 sum -23.086 1.170 -9.596 25.028 Atomic orbital electron populations 1.22984 0.79046 1.03596 1.00998 1.86093 1.20825 1.27115 1.89565 1.18787 0.91761 0.83883 1.00656 1.20851 0.99597 0.91566 1.08770 1.20110 0.90402 0.97183 1.03413 1.18525 0.91197 0.86866 1.07503 1.41657 1.04470 1.07559 1.65763 0.74961 1.20807 0.84706 0.93944 1.02261 1.19832 0.92517 0.91994 1.13366 1.18571 0.92394 0.91409 1.03609 1.20006 0.90809 0.96390 1.05196 1.20197 0.89761 0.97047 1.01641 1.20591 0.83756 0.90575 0.99158 0.90628 1.43908 1.07651 1.42354 1.44965 1.17332 0.86526 0.99461 0.96829 1.20116 0.98257 1.00362 0.99899 1.20931 0.92742 1.00808 0.99942 1.17505 0.93293 0.90390 0.91839 1.19392 0.93897 1.35666 1.00814 0.90973 1.25786 0.96609 0.94683 0.96982 1.69870 1.25512 1.35358 1.12794 0.86389 0.82297 0.79618 0.79089 1.18645 1.20022 1.20314 1.20537 0.96696 1.00672 1.02720 1.19812 0.92933 1.02174 1.03254 1.22104 0.97018 0.97209 1.00593 1.20403 0.89523 0.96792 1.02827 0.92962 0.88549 0.92922 0.85662 0.85347 0.84485 0.91113 0.90713 0.78356 0.89304 0.86484 0.91441 0.89147 0.89606 0.90002 0.91740 0.89679 0.90533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.78 101.05 0.99 1.18 16 2 O -0.32 -3.49 10.47 -19.70 -0.21 -3.69 16 3 C 0.09 1.09 6.67 -39.14 -0.26 0.83 16 4 C -0.19 -1.83 8.94 -39.27 -0.35 -2.18 16 5 C -0.09 -0.87 10.27 -39.15 -0.40 -1.27 16 6 C 0.07 0.75 7.23 -83.39 -0.60 0.15 16 7 N -0.59 -5.97 6.10 -6.18 -0.04 -6.01 16 8 H 0.41 2.88 8.96 -40.82 -0.37 2.52 16 9 C 0.09 1.07 7.01 -81.10 -0.57 0.50 16 10 C -0.17 -2.22 6.13 -102.99 -0.63 -2.85 16 11 C -0.05 -0.72 6.26 -105.32 -0.66 -1.38 16 12 C -0.10 -1.32 10.22 -38.80 -0.40 -1.71 16 13 C -0.05 -0.62 5.74 -27.68 -0.16 -0.78 16 14 C 0.17 2.41 2.12 -67.69 -0.14 2.27 16 15 H 0.08 1.25 6.43 -51.93 -0.33 0.92 16 16 N -0.76 -12.62 5.22 -51.80 -0.27 -12.90 16 17 C 0.10 2.02 6.65 -83.69 -0.56 1.46 16 18 C -0.16 -3.75 8.79 -39.77 -0.35 -4.10 16 19 C -0.12 -3.22 8.64 -39.26 -0.34 -3.56 16 20 C 0.07 1.96 5.57 -106.79 -0.60 1.36 16 21 C -0.47 -12.69 9.03 -37.87 -0.34 -13.03 16 22 H 0.07 1.91 7.91 -52.48 -0.41 1.49 16 23 C 0.07 1.92 5.13 -17.34 -0.09 1.83 16 24 N -0.81 -21.50 10.96 55.54 0.61 -20.89 16 25 Si 0.90 19.28 29.60 -169.99 -5.03 14.25 16 26 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 27 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 28 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 29 C -0.19 -4.59 9.74 -39.27 -0.38 -4.97 16 30 C -0.16 -3.54 9.82 -39.77 -0.39 -3.93 16 31 C -0.13 -1.66 5.38 -26.53 -0.14 -1.80 16 32 C -0.06 -0.61 6.28 -27.58 -0.17 -0.78 16 33 H 0.05 0.28 7.60 -51.93 -0.39 -0.11 16 34 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.05 0.29 7.60 -51.93 -0.39 -0.10 16 36 H 0.13 0.89 6.06 -52.48 -0.32 0.58 16 37 H 0.13 0.87 8.06 -52.48 -0.42 0.44 16 38 H 0.14 1.61 8.06 -52.48 -0.42 1.19 16 39 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.38 5.76 8.60 -40.82 -0.35 5.41 16 42 H 0.09 1.84 6.16 -52.49 -0.32 1.51 16 43 H 0.12 3.16 6.16 -52.48 -0.32 2.83 16 44 H 0.27 6.69 8.30 -40.82 -0.34 6.35 16 45 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 46 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 47 H 0.08 1.19 7.83 -51.93 -0.41 0.78 16 48 H 0.06 0.80 8.11 -51.93 -0.42 0.37 16 49 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 LS Contribution 401.74 15.07 6.05 6.05 Total: -1.00 -30.67 401.74 -12.42 -43.09 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -6.99 Total: 12.87 kcal Atomic # 6 Polarization: -26.22 SS G_CDS: -6.55 Total: -32.77 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.30 Total: -39.79 kcal Atomic # 8 Polarization: -3.49 SS G_CDS: -0.21 Total: -3.69 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.03 Total: 14.25 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.67 -12.42 -43.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133167529.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.802 kcal (2) G-P(sol) polarization free energy of solvation -30.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds