Wall clock time and date at job start Tue Mar 31 2020 04:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35989 * 117.00351 * 2 1 4 4 C 1.38977 * 119.09685 * 0.02562 * 3 2 1 5 5 C 1.38337 * 122.21772 * 179.97438 * 4 3 2 6 6 C 1.39330 * 117.14172 * 359.77055 * 5 4 3 7 7 N 1.36728 * 131.97386 * 179.59832 * 6 5 4 8 8 H 0.96998 * 125.11444 * 0.65850 * 7 6 5 9 9 C 1.37011 * 109.76869 * 180.39196 * 7 6 5 10 10 C 1.35060 * 109.78532 * 0.32562 * 9 7 6 11 11 C 1.41810 * 120.74965 * 0.52613 * 6 5 4 12 12 C 1.38705 * 119.10689 * 179.97438 * 3 2 1 13 13 C 1.50761 * 124.42399 * 179.97438 * 10 9 7 14 14 C 1.53322 * 108.56323 * 343.56051 * 13 10 9 15 15 H 1.08997 * 109.49660 * 289.76177 * 14 13 10 16 16 N 1.46495 * 109.50253 * 169.65147 * 14 13 10 17 17 C 1.38856 * 119.99789 * 155.16741 * 16 14 13 18 18 C 1.39568 * 119.84331 * 359.73544 * 17 16 14 19 19 C 1.36343 * 120.15868 * 179.71473 * 18 17 16 20 20 C 1.40882 * 119.83632 * 0.55284 * 19 18 17 21 21 C 1.41142 * 120.15061 * 179.69781 * 20 19 18 22 22 H 1.08006 * 119.99586 * 155.10924 * 21 20 19 23 23 C 1.39859 * 120.00442 * 335.11212 * 21 20 19 24 24 N 1.30904 * 119.99902 * 342.12893 * 23 21 20 25 25 Si 1.86800 * 120.00288 * 162.13014 * 23 21 20 26 26 H 1.48500 * 109.46984 * 94.64701 * 25 23 21 27 27 H 1.48497 * 109.47072 * 214.65021 * 25 23 21 28 28 H 1.48500 * 109.46730 * 334.65311 * 25 23 21 29 29 C 1.40881 * 119.69227 * 359.71651 * 20 19 18 30 30 C 1.36343 * 119.83490 * 0.02562 * 29 20 19 31 31 C 1.53140 * 109.29877 * 49.70599 * 14 13 10 32 32 C 1.51068 * 126.50591 * 180.39927 * 9 7 6 33 33 H 1.09001 * 109.47314 * 300.00472 * 1 2 3 34 34 H 1.09000 * 109.46951 * 60.00324 * 1 2 3 35 35 H 1.09004 * 109.47339 * 180.02562 * 1 2 3 36 36 H 1.07995 * 118.88762 * 359.97423 * 4 3 2 37 37 H 1.08001 * 121.43187 * 180.02562 * 5 4 3 38 38 H 1.08001 * 121.62512 * 0.04260 * 12 3 2 39 39 H 1.08997 * 109.62697 * 223.83361 * 13 10 9 40 40 H 1.09009 * 109.77477 * 103.37121 * 13 10 9 41 41 H 0.96993 * 120.00344 * 335.17366 * 16 14 13 42 42 H 1.08000 * 119.92112 * 359.97223 * 18 17 16 43 43 H 1.08000 * 120.07670 * 180.27335 * 19 18 17 44 44 H 0.96996 * 120.00152 * 180.02562 * 24 23 21 45 45 H 1.07995 * 120.08297 * 179.97438 * 29 20 19 46 46 H 1.07997 * 119.91791 * 179.97438 * 30 29 20 47 47 H 1.09007 * 109.47468 * 169.94798 * 31 14 13 48 48 H 1.08991 * 109.48775 * 49.92805 * 31 14 13 49 49 H 1.08996 * 109.61694 * 282.84528 * 32 9 7 50 50 H 1.09004 * 109.61228 * 43.36515 * 32 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2713 2.3652 0.0005 5 6 1.8313 3.6301 0.0011 6 6 3.2224 3.7093 0.0061 7 7 4.0776 4.7761 0.0008 8 1 3.8075 5.7077 0.0012 9 6 5.3734 4.3312 0.0008 10 6 5.3932 2.9808 -0.0012 11 6 4.0156 2.5338 -0.0009 12 6 3.4325 1.2625 0.0005 13 6 6.6491 2.1468 -0.0023 14 6 7.8269 3.0387 -0.4122 15 1 7.7394 3.2943 -1.4681 16 7 9.0847 2.3232 -0.1840 17 6 10.2169 2.6594 -0.9142 18 6 10.1515 3.6756 -1.8686 19 6 11.2607 4.0149 -2.5852 20 6 12.4720 3.3289 -2.3685 21 6 13.6227 3.6703 -3.1111 22 1 14.6045 3.4670 -2.7095 23 6 13.4917 4.2720 -4.3668 24 7 12.3526 4.2063 -5.0084 25 14 14.9422 5.1693 -5.1286 26 1 15.6757 4.2469 -6.0321 27 1 14.4504 6.3357 -5.9049 28 1 15.8536 5.6384 -4.0541 29 6 12.5293 2.3003 -1.4075 30 6 11.4135 1.9753 -0.6945 31 6 7.8079 4.3195 0.4271 32 6 6.6177 5.1879 0.0043 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 -0.3634 -1.0277 0.0005 36 1 0.1954 2.2708 0.0005 37 1 1.2167 4.5182 0.0019 38 1 4.0322 0.3643 0.0003 39 1 6.5445 1.3284 -0.7145 40 1 6.8250 1.7437 0.9951 41 1 9.1267 1.6147 0.4770 42 1 9.2210 4.1974 -2.0370 43 1 11.2097 4.8045 -3.3202 44 1 12.2618 4.6233 -5.8794 45 1 13.4544 1.7701 -1.2365 46 1 11.4558 1.1868 0.0422 47 1 8.7346 4.8714 0.2689 48 1 7.7140 4.0617 1.4819 49 1 6.7907 5.5861 -0.9954 50 1 6.4951 6.0083 0.7115 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133167760.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:26 Heat of formation + Delta-G solvation = 35.664078 kcal Electronic energy + Delta-G solvation = -30784.863357 eV Core-core repulsion = 26741.615727 eV Total energy + Delta-G solvation = -4043.247631 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 362.174 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.66310 -39.57267 -38.33670 -36.86617 -35.57703 -33.93667 -32.54776 -32.19552 -30.42454 -29.43475 -29.03319 -28.21742 -27.55794 -26.82488 -24.42357 -24.11133 -22.20161 -21.78086 -21.21983 -20.90274 -19.75530 -18.74977 -17.98212 -17.59263 -17.18071 -16.43124 -15.96801 -15.89947 -15.64093 -15.34002 -14.90317 -14.58592 -14.21766 -14.02834 -13.80566 -13.63732 -13.48020 -13.01707 -12.95990 -12.79943 -12.63899 -12.52691 -12.31611 -12.09204 -12.05629 -11.91295 -11.71281 -11.50390 -11.43277 -11.00932 -10.97832 -10.84792 -10.72080 -10.59140 -10.38292 -10.34263 -9.67540 -9.62822 -9.25004 -9.16256 -8.51385 -7.92572 -7.50688 -7.45544 -6.61157 -6.34849 -4.00215 0.85965 1.50435 2.54410 2.93577 2.94689 3.13336 3.16327 3.18896 3.21327 3.37837 3.69913 4.07499 4.24029 4.50315 4.53925 4.73597 4.78892 4.81314 4.88840 4.95100 5.03191 5.03900 5.09354 5.19685 5.25024 5.40001 5.52037 5.54946 5.59168 5.72951 5.77531 5.85470 5.87819 5.97774 6.03711 6.16376 6.24209 6.29397 6.30751 6.37952 6.44229 6.52800 6.74223 6.93178 6.97239 6.99908 7.23532 7.29259 7.38970 7.41648 7.59998 7.72683 7.88081 8.18469 8.33190 8.53684 8.74784 8.84443 9.09231 9.18769 10.40203 Molecular weight = 362.17amu Principal moments of inertia in cm(-1) A = 0.017605 B = 0.001796 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.036097 B =15582.727742 C =15863.616401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.092 3.908 4 C -0.186 4.186 5 C -0.093 4.093 6 C 0.067 3.933 7 N -0.587 5.587 8 H 0.414 0.586 9 C 0.088 3.912 10 C -0.166 4.166 11 C -0.059 4.059 12 C -0.103 4.103 13 C -0.048 4.048 14 C 0.166 3.834 15 H 0.076 0.924 16 N -0.755 5.755 17 C 0.095 3.905 18 C -0.164 4.164 19 C -0.124 4.124 20 C 0.073 3.927 21 C -0.467 4.467 22 H 0.072 0.928 23 C 0.075 3.925 24 N -0.808 5.808 25 Si 0.901 3.099 26 H -0.273 1.273 27 H -0.278 1.278 28 H -0.263 1.263 29 C -0.186 4.186 30 C -0.160 4.160 31 C -0.129 4.129 32 C -0.057 4.057 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.096 0.904 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.137 0.863 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.384 0.616 42 H 0.089 0.911 43 H 0.117 0.883 44 H 0.275 0.725 45 H 0.090 0.910 46 H 0.086 0.914 47 H 0.081 0.919 48 H 0.064 0.936 49 H 0.085 0.915 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.021 0.168 10.088 25.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.236 6.236 3 C 0.047 3.953 4 C -0.206 4.206 5 C -0.114 4.114 6 C -0.039 4.039 7 N -0.190 5.190 8 H 0.250 0.750 9 C -0.020 4.020 10 C -0.174 4.174 11 C -0.064 4.064 12 C -0.122 4.122 13 C -0.086 4.086 14 C 0.059 3.941 15 H 0.094 0.906 16 N -0.389 5.389 17 C -0.002 4.002 18 C -0.186 4.186 19 C -0.144 4.144 20 C 0.070 3.930 21 C -0.498 4.498 22 H 0.090 0.910 23 C -0.140 4.140 24 N -0.436 5.436 25 Si 0.726 3.274 26 H -0.199 1.199 27 H -0.203 1.203 28 H -0.187 1.187 29 C -0.206 4.206 30 C -0.182 4.182 31 C -0.169 4.169 32 C -0.095 4.095 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.114 0.886 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.155 0.845 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.216 0.784 42 H 0.107 0.893 43 H 0.135 0.865 44 H 0.086 0.914 45 H 0.109 0.891 46 H 0.104 0.896 47 H 0.100 0.900 48 H 0.083 0.917 49 H 0.103 0.897 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -23.145 0.290 9.755 25.119 hybrid contribution 0.021 0.792 -0.273 0.838 sum -23.124 1.082 9.482 25.016 Atomic orbital electron populations 1.22981 0.79064 1.03585 1.00986 1.86091 1.20808 1.27122 1.89598 1.18782 0.91759 0.83879 1.00870 1.20854 0.99584 0.91582 1.08571 1.20112 0.90404 0.97189 1.03698 1.18301 0.91311 0.87065 1.07269 1.41376 1.04529 1.07638 1.65433 0.74977 1.20697 0.84679 0.94023 1.02649 1.19757 0.92551 0.92067 1.12977 1.18603 0.92388 0.91444 1.04012 1.20007 0.90810 0.96394 1.05014 1.20198 0.89726 0.97019 1.01699 1.20597 0.83733 0.90625 0.99146 0.90625 1.43908 1.07340 1.42091 1.45551 1.17331 0.86420 0.99514 0.96886 1.20113 0.98120 1.00461 0.99914 1.20924 0.92632 1.00744 1.00122 1.17494 0.93307 0.90361 0.91807 1.19355 0.93844 1.35765 1.00875 0.91027 1.25780 0.96612 0.94680 0.96942 1.69858 1.25737 1.35431 1.12531 0.86435 0.82102 0.79564 0.79333 1.19890 1.20338 1.18696 1.20540 0.96620 1.00584 1.02879 1.19815 0.92893 1.02086 1.03375 1.22109 0.97022 0.97230 1.00551 1.20414 0.89564 0.96774 1.02782 0.92982 0.92928 0.88558 0.85684 0.85354 0.84506 0.90684 0.91057 0.78356 0.89302 0.86529 0.91400 0.89146 0.89607 0.90002 0.91733 0.89675 0.90569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.78 101.05 0.99 1.18 16 2 O -0.32 -3.50 10.47 -19.71 -0.21 -3.70 16 3 C 0.09 1.07 6.67 -39.13 -0.26 0.81 16 4 C -0.19 -1.82 8.94 -39.27 -0.35 -2.17 16 5 C -0.09 -0.89 10.27 -39.14 -0.40 -1.30 16 6 C 0.07 0.78 7.19 -83.91 -0.60 0.17 16 7 N -0.59 -5.91 6.05 -6.51 -0.04 -5.95 16 8 H 0.41 2.86 8.96 -40.82 -0.37 2.50 16 9 C 0.09 1.02 7.00 -81.23 -0.57 0.46 16 10 C -0.17 -2.17 6.12 -103.12 -0.63 -2.80 16 11 C -0.06 -0.78 6.26 -105.32 -0.66 -1.44 16 12 C -0.10 -1.30 10.22 -38.80 -0.40 -1.69 16 13 C -0.05 -0.62 5.76 -27.69 -0.16 -0.78 16 14 C 0.17 2.41 2.12 -67.69 -0.14 2.26 16 15 H 0.08 1.25 6.42 -51.93 -0.33 0.91 16 16 N -0.76 -12.61 5.22 -51.81 -0.27 -12.89 16 17 C 0.10 2.01 6.65 -83.69 -0.56 1.46 16 18 C -0.16 -3.74 8.80 -39.77 -0.35 -4.09 16 19 C -0.12 -3.22 8.63 -39.26 -0.34 -3.56 16 20 C 0.07 1.97 5.57 -106.80 -0.59 1.38 16 21 C -0.47 -12.71 9.03 -37.87 -0.34 -13.05 16 22 H 0.07 1.89 7.91 -52.48 -0.41 1.47 16 23 C 0.07 1.94 5.13 -17.34 -0.09 1.85 16 24 N -0.81 -21.51 10.98 55.54 0.61 -20.90 16 25 Si 0.90 19.27 29.60 -169.99 -5.03 14.24 16 26 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 27 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 28 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 29 C -0.19 -4.59 9.74 -39.26 -0.38 -4.97 16 30 C -0.16 -3.54 9.82 -39.77 -0.39 -3.93 16 31 C -0.13 -1.66 5.40 -26.51 -0.14 -1.80 16 32 C -0.06 -0.60 6.28 -27.56 -0.17 -0.78 16 33 H 0.05 0.28 7.60 -51.93 -0.39 -0.11 16 34 H 0.05 0.29 7.60 -51.93 -0.39 -0.10 16 35 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.13 0.90 6.06 -52.49 -0.32 0.58 16 37 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 38 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 0.85 8.13 -51.92 -0.42 0.43 16 41 H 0.38 5.75 8.59 -40.82 -0.35 5.40 16 42 H 0.09 1.84 6.16 -52.49 -0.32 1.52 16 43 H 0.12 3.14 6.18 -52.49 -0.32 2.82 16 44 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 45 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 46 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 47 H 0.08 1.19 7.84 -51.93 -0.41 0.78 16 48 H 0.06 0.80 8.11 -51.93 -0.42 0.37 16 49 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 401.68 15.07 6.05 6.05 Total: -1.00 -30.66 401.68 -12.42 -43.08 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -6.99 Total: 12.86 kcal Atomic # 6 Polarization: -26.25 SS G_CDS: -6.55 Total: -32.79 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.30 Total: -39.73 kcal Atomic # 8 Polarization: -3.50 SS G_CDS: -0.21 Total: -3.70 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.66 -12.42 -43.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133167760.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.748 kcal (2) G-P(sol) polarization free energy of solvation -30.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds