Wall clock time and date at job start Tue Mar 31 2020 06:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31530 * 1 3 3 Si 1.86800 * 120.00262 * 2 1 4 4 H 1.48497 * 109.47162 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46941 * 299.99819 * 3 2 1 6 6 H 1.48501 * 109.46918 * 59.99503 * 3 2 1 7 7 C 1.38693 * 119.99504 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99733 * 180.02562 * 7 2 1 9 9 O 1.34775 * 120.00485 * 0.02562 * 7 2 1 10 10 C 1.35565 * 117.00110 * 174.79072 * 9 7 2 11 11 C 1.39193 * 119.88929 * 2.32447 * 10 9 7 12 12 C 1.37098 * 120.11623 * 179.97438 * 11 10 9 13 13 C 1.40128 * 119.88368 * 0.02562 * 12 11 10 14 14 C 1.46735 * 120.11186 * 180.02562 * 13 12 11 15 15 C 1.35867 * 120.00364 * 18.51852 * 14 13 12 16 16 S 1.77247 * 127.75334 * 7.92739 * 15 14 13 17 17 C 1.77226 * 94.70754 * 179.97438 * 16 15 14 18 18 N 1.31299 * 141.68335 * 180.02562 * 17 16 15 19 19 C 1.35681 * 109.57267 * 179.97438 * 18 17 16 20 20 C 1.39815 * 133.45321 * 180.02562 * 19 18 17 21 21 C 1.37755 * 119.64558 * 179.97438 * 20 19 18 22 22 C 1.38658 * 120.57770 * 359.97438 * 21 20 19 23 23 C 1.38150 * 120.38659 * 0.02562 * 22 21 20 24 24 C 1.38406 * 119.64205 * 359.95276 * 23 22 21 25 25 N 1.36606 * 107.55521 * 359.97438 * 17 16 15 26 26 C 1.33981 * 117.24802 * 359.97438 * 25 17 16 27 27 O 1.21691 * 121.99887 * 179.97438 * 26 25 17 28 28 C 1.40137 * 119.77861 * 0.27561 * 13 12 11 29 29 C 1.37091 * 119.88249 * 359.41961 * 28 13 12 30 30 H 0.97003 * 119.99876 * 0.02562 * 1 2 3 31 31 H 1.08001 * 119.94727 * 359.97438 * 11 10 9 32 32 H 1.08000 * 120.06497 * 180.02562 * 12 11 10 33 33 H 1.08008 * 120.00006 * 198.52803 * 14 13 12 34 34 H 1.07996 * 120.18126 * 0.02562 * 20 19 18 35 35 H 1.07993 * 119.70744 * 179.97438 * 21 20 19 36 36 H 1.08000 * 119.80998 * 179.97438 * 22 21 20 37 37 H 1.07995 * 120.17908 * 179.97438 * 23 22 21 38 38 H 1.07998 * 120.05359 * 179.70752 * 28 13 12 39 39 H 1.08009 * 119.94331 * 180.29004 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8907 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0087 -1.2012 0.0005 8 1 3.0887 -1.2012 0.0010 9 8 1.3348 -2.3684 0.0005 10 6 2.0688 -3.5028 -0.1086 11 6 3.4576 -3.4277 -0.1651 12 6 4.2045 -4.5721 -0.2750 13 6 3.5674 -5.8189 -0.3309 14 6 4.3619 -7.0470 -0.4478 15 6 5.6828 -7.0345 -0.1297 16 16 6.6055 -5.7214 0.6227 17 6 8.1407 -6.6068 0.6277 18 7 9.4002 -6.4829 0.9775 19 6 10.0704 -7.6229 0.6740 20 6 11.4004 -8.0262 0.8270 21 6 11.7842 -9.2814 0.4090 22 6 10.8633 -10.1473 -0.1610 23 6 9.5460 -9.7618 -0.3182 24 6 9.1466 -8.5036 0.0978 25 7 7.9102 -7.8346 0.0750 26 6 6.6606 -8.1007 -0.3287 27 8 6.3591 -9.1664 -0.8329 28 6 2.1687 -5.8888 -0.2799 29 6 1.4312 -4.7390 -0.1638 30 1 -0.4850 0.8401 -0.0004 31 1 3.9477 -2.4663 -0.1224 32 1 5.2820 -4.5129 -0.3184 33 1 3.8968 -7.9609 -0.7871 34 1 12.1228 -7.3576 1.2712 35 1 12.8112 -9.5938 0.5264 36 1 11.1778 -11.1285 -0.4847 37 1 8.8316 -10.4387 -0.7629 38 1 1.6729 -6.8470 -0.3274 39 1 0.3533 -4.7920 -0.1197 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000141422897.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:00 Heat of formation + Delta-G solvation = 81.735366 kcal Electronic energy + Delta-G solvation = -27392.853639 eV Core-core repulsion = 23359.545918 eV Total energy + Delta-G solvation = -4033.307721 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 364.067 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.85260 -39.67633 -39.39059 -37.55953 -37.25565 -34.32404 -33.53622 -32.63659 -31.11779 -30.74465 -29.68592 -28.63060 -26.09568 -25.11575 -23.93118 -23.10182 -22.35437 -22.18315 -20.91260 -19.39684 -18.66005 -18.47038 -17.60884 -17.41183 -16.79483 -16.76969 -15.76200 -15.39142 -15.03231 -14.95396 -14.84538 -14.50823 -14.26877 -14.21778 -14.15830 -14.12738 -13.32379 -12.94299 -12.86454 -12.39943 -12.31461 -12.20034 -12.04985 -12.02864 -11.70938 -11.38501 -11.30465 -11.09551 -11.00309 -10.69433 -10.64368 -10.46775 -10.16060 -9.80074 -9.35086 -9.08549 -8.73440 -8.70318 -7.95098 -7.18102 -6.94790 -4.43637 -0.07536 0.65751 0.67043 1.02643 1.61449 1.89706 1.93819 2.20686 2.37241 2.84195 2.91358 2.93739 2.98287 3.54633 3.61542 3.72636 4.18132 4.20406 4.56750 4.65800 4.69099 4.75446 4.77546 4.95417 4.98908 5.09287 5.21116 5.25118 5.35251 5.53633 5.61160 5.73332 5.80779 5.97695 6.08798 6.10012 6.15365 6.21123 6.45331 6.46212 6.59923 6.62810 6.81662 6.90366 6.98659 7.05053 7.33576 7.40387 7.50941 8.48625 9.11580 10.19792 Molecular weight = 364.07amu Principal moments of inertia in cm(-1) A = 0.018137 B = 0.002096 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.394123 B =13353.153319 C =14778.037124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.043 3.957 3 Si 0.949 3.051 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.386 4.386 8 H 0.105 0.895 9 O -0.143 6.143 10 C 0.170 3.830 11 C -0.234 4.234 12 C -0.026 4.026 13 C -0.226 4.226 14 C 0.137 3.863 15 C -0.322 4.322 16 S 0.172 5.828 17 C 0.240 3.760 18 N -0.441 5.441 19 C 0.071 3.929 20 C -0.068 4.068 21 C -0.115 4.115 22 C -0.106 4.106 23 C -0.092 4.092 24 C 0.062 3.938 25 N -0.499 5.499 26 C 0.568 3.432 27 O -0.481 6.481 28 C -0.022 4.022 29 C -0.195 4.195 30 H 0.279 0.721 31 H 0.137 0.863 32 H 0.122 0.878 33 H 0.149 0.851 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.124 0.876 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.006 -12.760 0.117 18.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.166 4.166 3 Si 0.772 3.228 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.461 4.461 8 H 0.122 0.878 9 O -0.041 6.041 10 C 0.110 3.890 11 C -0.253 4.253 12 C -0.048 4.048 13 C -0.227 4.227 14 C 0.110 3.890 15 C -0.437 4.437 16 S 0.414 5.586 17 C -0.131 4.131 18 N -0.164 5.164 19 C -0.045 4.045 20 C -0.089 4.089 21 C -0.134 4.134 22 C -0.126 4.126 23 C -0.113 4.113 24 C -0.040 4.040 25 N -0.211 5.211 26 C 0.362 3.638 27 O -0.355 6.355 28 C -0.041 4.041 29 C -0.214 4.214 30 H 0.090 0.910 31 H 0.155 0.845 32 H 0.139 0.861 33 H 0.166 0.834 34 H 0.156 0.844 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.149 0.851 38 H 0.142 0.858 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 13.445 -11.339 0.612 17.598 hybrid contribution 0.504 -1.188 -0.829 1.534 sum 13.948 -12.527 -0.217 18.749 Atomic orbital electron populations 1.70023 1.06349 1.28987 1.41176 1.25545 0.96017 0.99610 0.95452 0.85501 0.79438 0.79063 0.78782 1.18426 1.19602 1.19577 1.21742 0.92569 0.80271 1.51493 0.87756 1.83888 1.35566 1.12175 1.72432 1.19654 0.90281 0.87710 0.91344 1.20937 0.93489 0.99200 1.11696 1.20984 0.97912 0.91825 0.94077 1.18317 0.93345 0.91146 1.19940 1.21876 0.88396 0.97139 0.81570 1.22786 0.98265 0.98505 1.24177 1.85796 0.89312 1.12274 1.71179 1.27802 1.00149 0.88172 0.96973 1.70542 0.99923 1.23252 1.22659 1.19099 0.94575 0.89824 1.01037 1.20355 0.91934 0.96481 1.00106 1.21010 1.00049 0.93201 0.99176 1.21026 0.91778 1.00136 0.99654 1.20257 0.96983 0.93091 1.00939 1.19155 0.83307 0.96394 1.05187 1.44901 1.08668 1.16148 1.51407 1.17915 0.80173 0.88185 0.77558 1.90816 1.79627 1.25074 1.39938 1.20728 0.91791 0.97497 0.94070 1.20061 1.00143 0.89779 1.11413 0.91046 0.84522 0.86136 0.83352 0.84443 0.84683 0.84728 0.85081 0.85769 0.85549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.46 13.67 55.48 0.76 -20.71 16 2 C 0.04 1.02 5.49 -17.51 -0.10 0.92 16 3 Si 0.95 17.88 29.55 -169.99 -5.02 12.86 16 4 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 5 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 6 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 7 C -0.39 -9.28 9.48 30.90 0.29 -8.99 16 8 H 0.11 2.28 5.17 -52.49 -0.27 2.01 16 9 O -0.14 -3.48 9.74 0.77 0.01 -3.47 16 10 C 0.17 3.45 6.67 -38.87 -0.26 3.19 16 11 C -0.23 -4.30 9.12 -39.64 -0.36 -4.67 16 12 C -0.03 -0.42 8.64 -39.29 -0.34 -0.76 16 13 C -0.23 -3.33 5.82 -105.04 -0.61 -3.94 16 14 C 0.14 1.80 9.79 -37.00 -0.36 1.44 16 15 C -0.32 -4.69 6.31 -37.31 -0.24 -4.92 16 16 S 0.17 2.46 18.87 -107.50 -2.03 0.43 16 17 C 0.24 3.83 8.96 -88.26 -0.79 3.04 16 18 N -0.44 -7.17 11.32 -10.72 -0.12 -7.29 16 19 C 0.07 1.04 7.21 -84.90 -0.61 0.42 16 20 C -0.07 -0.74 10.11 -39.17 -0.40 -1.14 16 21 C -0.11 -0.98 10.01 -39.60 -0.40 -1.37 16 22 C -0.11 -0.97 10.04 -39.46 -0.40 -1.36 16 23 C -0.09 -1.14 10.07 -39.55 -0.40 -1.54 16 24 C 0.06 0.93 7.15 -83.09 -0.59 0.34 16 25 N -0.50 -8.13 3.06 -61.26 -0.19 -8.32 16 26 C 0.57 9.22 7.90 -13.49 -0.11 9.11 16 27 O -0.48 -8.44 17.85 5.20 0.09 -8.35 16 28 C -0.02 -0.32 9.77 -39.29 -0.38 -0.70 16 29 C -0.19 -3.36 9.95 -39.64 -0.39 -3.76 16 30 H 0.28 6.52 8.31 -40.82 -0.34 6.18 16 31 H 0.14 2.49 5.60 -52.49 -0.29 2.20 16 32 H 0.12 1.79 4.37 -26.23 -0.11 1.68 16 33 H 0.15 1.61 8.06 -52.48 -0.42 1.19 16 34 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 35 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 38 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 39 H 0.13 2.06 8.06 -52.48 -0.42 1.64 16 LS Contribution 357.74 15.07 5.39 5.39 Total: -1.00 -28.95 357.74 -10.33 -39.28 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -2.77 Total: 4.86 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -6.44 Total: -14.68 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.45 Total: -36.32 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.10 Total: -11.82 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.02 Total: 12.86 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -2.03 Total: 0.43 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.95 -10.33 -39.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000141422897.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.012 kcal (2) G-P(sol) polarization free energy of solvation -28.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds