Wall clock time and date at job start Tue Mar 31 2020 06:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31530 * 1 3 3 Si 1.86800 * 120.00262 * 2 1 4 4 H 1.48497 * 109.47162 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46941 * 299.99819 * 3 2 1 6 6 H 1.48501 * 109.46918 * 59.99503 * 3 2 1 7 7 C 1.38693 * 119.99504 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99733 * 180.02562 * 7 2 1 9 9 O 1.34775 * 120.00485 * 0.02562 * 7 2 1 10 10 C 1.35565 * 117.00110 * 174.79072 * 9 7 2 11 11 C 1.39193 * 119.88929 * 2.32447 * 10 9 7 12 12 C 1.37098 * 120.11623 * 179.97438 * 11 10 9 13 13 C 1.40128 * 119.88368 * 0.02562 * 12 11 10 14 14 C 1.46735 * 120.11186 * 180.02562 * 13 12 11 15 15 C 1.35867 * 120.00364 * 18.51852 * 14 13 12 16 16 S 1.77247 * 127.75334 * 7.92739 * 15 14 13 17 17 C 1.77226 * 94.70754 * 179.97438 * 16 15 14 18 18 N 1.31299 * 141.68335 * 180.02562 * 17 16 15 19 19 C 1.35681 * 109.57267 * 179.97438 * 18 17 16 20 20 C 1.39815 * 133.45321 * 180.02562 * 19 18 17 21 21 C 1.37755 * 119.64558 * 179.97438 * 20 19 18 22 22 C 1.38658 * 120.57770 * 359.97438 * 21 20 19 23 23 C 1.38150 * 120.38659 * 0.02562 * 22 21 20 24 24 C 1.38406 * 119.64205 * 359.95276 * 23 22 21 25 25 N 1.36606 * 107.55521 * 359.97438 * 17 16 15 26 26 C 1.33981 * 117.24802 * 359.97438 * 25 17 16 27 27 O 1.21691 * 121.99887 * 179.97438 * 26 25 17 28 28 C 1.40137 * 119.77861 * 0.27561 * 13 12 11 29 29 C 1.37091 * 119.88249 * 359.41961 * 28 13 12 30 30 H 0.97003 * 119.99876 * 0.02562 * 1 2 3 31 31 H 1.08001 * 119.94727 * 359.97438 * 11 10 9 32 32 H 1.08000 * 120.06497 * 180.02562 * 12 11 10 33 33 H 1.08008 * 120.00006 * 198.52803 * 14 13 12 34 34 H 1.07996 * 120.18126 * 0.02562 * 20 19 18 35 35 H 1.07993 * 119.70744 * 179.97438 * 21 20 19 36 36 H 1.08000 * 119.80998 * 179.97438 * 22 21 20 37 37 H 1.07995 * 120.17908 * 179.97438 * 23 22 21 38 38 H 1.07998 * 120.05359 * 179.70752 * 28 13 12 39 39 H 1.08009 * 119.94331 * 180.29004 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8907 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0087 -1.2012 0.0005 8 1 3.0887 -1.2012 0.0010 9 8 1.3348 -2.3684 0.0005 10 6 2.0688 -3.5028 -0.1086 11 6 3.4576 -3.4277 -0.1651 12 6 4.2045 -4.5721 -0.2750 13 6 3.5674 -5.8189 -0.3309 14 6 4.3619 -7.0470 -0.4478 15 6 5.6828 -7.0345 -0.1297 16 16 6.6055 -5.7214 0.6227 17 6 8.1407 -6.6068 0.6277 18 7 9.4002 -6.4829 0.9775 19 6 10.0704 -7.6229 0.6740 20 6 11.4004 -8.0262 0.8270 21 6 11.7842 -9.2814 0.4090 22 6 10.8633 -10.1473 -0.1610 23 6 9.5460 -9.7618 -0.3182 24 6 9.1466 -8.5036 0.0978 25 7 7.9102 -7.8346 0.0750 26 6 6.6606 -8.1007 -0.3287 27 8 6.3591 -9.1664 -0.8329 28 6 2.1687 -5.8888 -0.2799 29 6 1.4312 -4.7390 -0.1638 30 1 -0.4850 0.8401 -0.0004 31 1 3.9477 -2.4663 -0.1224 32 1 5.2820 -4.5129 -0.3184 33 1 3.8968 -7.9609 -0.7871 34 1 12.1228 -7.3576 1.2712 35 1 12.8112 -9.5938 0.5264 36 1 11.1778 -11.1285 -0.4847 37 1 8.8316 -10.4387 -0.7629 38 1 1.6729 -6.8470 -0.3274 39 1 0.3533 -4.7920 -0.1197 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000141422897.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:59 Heat of formation + Delta-G solvation = 66.763494 kcal Electronic energy + Delta-G solvation = -27393.502868 eV Core-core repulsion = 23359.545918 eV Total energy + Delta-G solvation = -4033.956950 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 364.067 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.96264 -41.06919 -40.65779 -38.75282 -38.46325 -35.53400 -34.86825 -34.16007 -32.18110 -32.03751 -30.67173 -29.91906 -27.62809 -26.38227 -25.03651 -24.34874 -23.62929 -23.23821 -22.12999 -20.56847 -20.08001 -19.77680 -18.98768 -18.54934 -17.99796 -17.83213 -17.04215 -16.68563 -16.36812 -16.15756 -15.90611 -15.86031 -15.71854 -15.43978 -15.40039 -15.07196 -14.66293 -14.37113 -14.10353 -13.61208 -13.55852 -13.22851 -13.17378 -13.02407 -12.96704 -12.80021 -12.57023 -12.44202 -12.20783 -12.10964 -11.92445 -11.58682 -11.41058 -11.26875 -10.90196 -10.21234 -10.03957 -9.68495 -9.24925 -8.59060 -8.46728 -6.22751 -1.24502 -0.51443 -0.38306 0.06711 0.41833 0.56364 0.73443 1.04686 1.19066 1.37625 1.44297 1.54769 1.64178 2.12125 2.56724 2.64901 2.73352 3.06740 3.11773 3.31949 3.62258 3.66548 3.74940 3.88347 3.93982 3.98050 4.15806 4.23338 4.30782 4.35742 4.52583 4.58451 4.74267 4.83235 4.87840 5.07076 5.08591 5.11832 5.22043 5.34290 5.40961 5.47106 5.50813 5.54504 5.66491 5.85101 5.90260 5.95578 6.26262 6.85527 7.57197 8.61804 Molecular weight = 364.07amu Principal moments of inertia in cm(-1) A = 0.018137 B = 0.002096 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.394123 B =13353.153319 C =14778.037124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.013 4.013 3 Si 1.016 2.984 4 H -0.249 1.249 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.414 4.414 8 H 0.111 0.889 9 O -0.203 6.203 10 C 0.150 3.850 11 C -0.243 4.243 12 C -0.030 4.030 13 C -0.203 4.203 14 C 0.154 3.846 15 C -0.313 4.313 16 S 0.177 5.823 17 C 0.217 3.783 18 N -0.454 5.454 19 C 0.037 3.963 20 C -0.070 4.070 21 C -0.098 4.098 22 C -0.083 4.083 23 C -0.114 4.114 24 C 0.033 3.967 25 N -0.508 5.508 26 C 0.567 3.433 27 O -0.497 6.497 28 C -0.002 4.002 29 C -0.205 4.205 30 H 0.278 0.722 31 H 0.130 0.870 32 H 0.135 0.865 33 H 0.187 0.813 34 H 0.158 0.842 35 H 0.181 0.819 36 H 0.175 0.825 37 H 0.128 0.872 38 H 0.175 0.825 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.080 -17.145 -0.170 24.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.214 4.214 3 Si 0.835 3.165 4 H -0.172 1.172 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.490 4.490 8 H 0.128 0.872 9 O -0.106 6.106 10 C 0.095 3.905 11 C -0.262 4.262 12 C -0.052 4.052 13 C -0.205 4.205 14 C 0.127 3.873 15 C -0.428 4.428 16 S 0.420 5.580 17 C -0.153 4.153 18 N -0.176 5.176 19 C -0.078 4.078 20 C -0.090 4.090 21 C -0.118 4.118 22 C -0.102 4.102 23 C -0.135 4.135 24 C -0.068 4.068 25 N -0.221 5.221 26 C 0.361 3.639 27 O -0.372 6.372 28 C -0.020 4.020 29 C -0.224 4.224 30 H 0.087 0.913 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.204 0.796 34 H 0.175 0.825 35 H 0.199 0.801 36 H 0.192 0.808 37 H 0.146 0.854 38 H 0.192 0.808 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 17.618 -15.795 0.332 23.664 hybrid contribution -0.121 -0.680 -0.753 1.022 sum 17.497 -16.476 -0.421 24.037 Atomic orbital electron populations 1.70141 1.08017 1.29386 1.46338 1.26597 0.96791 1.02790 0.95176 0.84555 0.78535 0.74794 0.78640 1.17235 1.19342 1.19338 1.22008 0.92955 0.80921 1.53080 0.87163 1.83894 1.36451 1.12929 1.77295 1.20274 0.91253 0.88121 0.90841 1.21002 0.93128 0.99975 1.12139 1.21186 0.98659 0.91717 0.93592 1.18630 0.93959 0.91260 1.16634 1.22142 0.87501 0.97473 0.80169 1.23036 0.98574 0.98083 1.23122 1.85743 0.88976 1.12135 1.71140 1.27858 1.00483 0.88622 0.98374 1.70452 1.00304 1.24436 1.22439 1.19594 0.96094 0.89444 1.02678 1.20832 0.90707 0.97867 0.99571 1.21569 1.01975 0.91627 0.96581 1.21582 0.90182 1.01571 0.96867 1.20509 0.98643 0.92277 1.02063 1.19645 0.82968 0.97674 1.06525 1.44971 1.09070 1.16463 1.51575 1.18088 0.80530 0.88129 0.77171 1.90804 1.80005 1.25653 1.40714 1.21214 0.91341 0.98479 0.91016 1.20388 1.00997 0.89624 1.11384 0.91316 0.85240 0.84860 0.79623 0.82475 0.80128 0.80773 0.85414 0.80751 0.84953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.74 13.67 21.62 0.30 -50.44 16 2 C -0.01 -0.68 5.49 84.85 0.47 -0.21 16 3 Si 1.02 39.19 29.55 68.60 2.03 41.22 16 4 H -0.25 -8.89 7.11 99.48 0.71 -8.18 16 5 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 6 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 7 C -0.41 -21.61 9.48 67.93 0.64 -20.96 16 8 H 0.11 5.23 5.17 -2.91 -0.02 5.22 16 9 O -0.20 -10.73 9.74 -20.14 -0.20 -10.93 16 10 C 0.15 6.35 6.67 22.73 0.15 6.50 16 11 C -0.24 -9.18 9.12 22.23 0.20 -8.98 16 12 C -0.03 -0.93 8.64 22.46 0.19 -0.73 16 13 C -0.20 -5.33 5.82 -20.14 -0.12 -5.45 16 14 C 0.15 3.39 9.79 23.94 0.23 3.62 16 15 C -0.31 -8.25 6.31 23.74 0.15 -8.10 16 16 S 0.18 4.85 18.87 -56.49 -1.07 3.79 16 17 C 0.22 6.79 8.96 179.52 1.61 8.40 16 18 N -0.45 -14.45 11.32 -187.82 -2.13 -16.58 16 19 C 0.04 1.02 7.21 39.37 0.28 1.31 16 20 C -0.07 -1.28 10.11 22.54 0.23 -1.05 16 21 C -0.10 -1.16 10.01 22.26 0.22 -0.94 16 22 C -0.08 -1.12 10.04 22.35 0.22 -0.89 16 23 C -0.11 -2.54 10.07 22.29 0.22 -2.32 16 24 C 0.03 0.94 7.15 38.21 0.27 1.21 16 25 N -0.51 -15.97 3.06 -466.38 -1.43 -17.40 16 26 C 0.57 17.30 7.90 86.39 0.68 17.98 16 27 O -0.50 -16.34 17.85 -4.32 -0.08 -16.41 16 28 C 0.00 -0.06 9.77 22.46 0.22 0.16 16 29 C -0.20 -6.96 9.95 22.23 0.22 -6.74 16 30 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 31 H 0.13 5.01 5.60 -2.91 -0.02 4.99 16 32 H 0.13 3.78 4.37 -19.61 -0.09 3.69 16 33 H 0.19 2.90 8.06 -2.91 -0.02 2.88 16 34 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 35 H 0.18 0.57 8.06 -2.91 -0.02 0.55 16 36 H 0.17 1.00 8.06 -2.91 -0.02 0.97 16 37 H 0.13 2.85 8.06 -2.91 -0.02 2.83 16 38 H 0.18 2.73 8.06 -2.91 -0.02 2.71 16 39 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -71.62 357.74 4.61 -67.00 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 1.07 Total: 16.92 kcal Atomic # 6 Polarization: -23.28 SS G_CDS: 6.11 Total: -17.17 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -3.26 Total: -84.43 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.27 Total: -27.34 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Atomic # 16 Polarization: 4.85 SS G_CDS: -1.07 Total: 3.79 kcal Total: -71.62 4.61 -67.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000141422897.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.767 kcal (2) G-P(sol) polarization free energy of solvation -71.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds