Wall clock time and date at job start Tue Mar 31 2020 06:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31527 * 1 3 3 Si 1.86795 * 119.99823 * 2 1 4 4 H 1.48501 * 109.47284 * 269.99436 * 3 2 1 5 5 H 1.48500 * 109.47331 * 29.99964 * 3 2 1 6 6 H 1.48506 * 109.47016 * 149.99889 * 3 2 1 7 7 C 1.38686 * 119.99757 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00110 * 180.02562 * 7 2 1 9 9 O 1.34775 * 120.00315 * 0.02562 * 7 2 1 10 10 C 1.35516 * 117.00192 * 179.71641 * 9 7 2 11 11 C 1.38745 * 120.17908 * 4.33941 * 10 9 7 12 12 C 1.38081 * 120.10143 * 180.25884 * 11 10 9 13 13 C 1.38638 * 120.47622 * 359.74624 * 12 11 10 14 14 C 1.37728 * 120.36319 * 359.97438 * 13 12 11 15 15 C 1.40013 * 119.88305 * 0.02562 * 14 13 12 16 16 C 1.46673 * 120.23351 * 179.97438 * 15 14 13 17 17 C 1.35890 * 120.00179 * 18.84317 * 16 15 14 18 18 S 1.77246 * 127.75398 * 6.70421 * 17 16 15 19 19 C 1.77226 * 94.70720 * 180.02562 * 18 17 16 20 20 N 1.31308 * 141.69124 * 180.02562 * 19 18 17 21 21 C 1.35682 * 109.57303 * 180.02562 * 20 19 18 22 22 C 1.39817 * 133.45750 * 180.36094 * 21 20 19 23 23 C 1.37743 * 119.64504 * 180.11898 * 22 21 20 24 24 C 1.38669 * 120.58374 * 359.45240 * 23 22 21 25 25 C 1.38142 * 120.37815 * 0.27246 * 24 23 22 26 26 C 1.38403 * 119.64782 * 0.02562 * 25 24 23 27 27 N 1.36610 * 107.55174 * 0.02562 * 19 18 17 28 28 C 1.33977 * 117.24568 * 359.97438 * 27 19 18 29 29 O 1.21691 * 121.99492 * 180.02562 * 28 27 19 30 30 H 0.97000 * 119.99934 * 0.02562 * 1 2 3 31 31 H 1.08000 * 119.95110 * 359.97438 * 11 10 9 32 32 H 1.08004 * 119.76050 * 179.76321 * 12 11 10 33 33 H 1.07998 * 119.81632 * 179.97438 * 13 12 11 34 34 H 1.08002 * 120.06164 * 179.97438 * 14 13 12 35 35 H 1.08005 * 120.00128 * 198.83707 * 16 15 14 36 36 H 1.08000 * 120.17649 * 359.83937 * 22 21 20 37 37 H 1.08004 * 119.70571 * 179.72202 * 23 22 21 38 38 H 1.07996 * 119.80723 * 180.29592 * 24 23 22 39 39 H 1.07995 * 120.17480 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0086 -1.2011 0.0005 8 1 3.0886 -1.2011 0.0010 9 8 1.3348 -2.3683 0.0005 10 6 2.0728 -3.5048 -0.0049 11 6 3.4561 -3.4386 0.0806 12 6 4.2068 -4.5975 0.0696 13 6 3.5885 -5.8350 -0.0215 14 6 2.2164 -5.9235 -0.1015 15 6 1.4404 -4.7581 -0.0916 16 6 -0.0213 -4.8434 -0.1770 17 6 -0.6521 -6.0110 0.1156 18 16 0.0611 -7.4947 0.7725 19 6 -1.4676 -8.3911 0.7997 20 7 -1.9699 -9.5619 1.1175 21 6 -3.3034 -9.5676 0.8669 22 6 -4.3071 -10.5284 1.0226 23 6 -5.6022 -10.2248 0.6653 24 6 -5.9205 -8.9718 0.1636 25 6 -4.9398 -8.0111 0.0100 26 6 -3.6331 -8.3047 0.3593 27 7 -2.4411 -7.5599 0.3227 28 6 -2.0693 -6.3254 -0.0416 29 8 -2.8652 -5.5145 -0.4773 30 1 -0.4850 0.8401 -0.0004 31 1 3.9466 -2.4791 0.1513 32 1 5.2835 -4.5393 0.1325 33 1 4.1861 -6.7345 -0.0296 34 1 1.7399 -6.8901 -0.1727 35 1 -0.5964 -3.9783 -0.4723 36 1 -4.0673 -11.5050 1.4166 37 1 -6.3775 -10.9678 0.7809 38 1 -6.9409 -8.7456 -0.1081 39 1 -5.1913 -7.0362 -0.3806 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000147679506.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:37 Heat of formation + Delta-G solvation = 82.189488 kcal Electronic energy + Delta-G solvation = -27952.326756 eV Core-core repulsion = 23919.038727 eV Total energy + Delta-G solvation = -4033.288029 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 364.067 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.71172 -39.68383 -39.23526 -37.39933 -37.00014 -34.26966 -33.66613 -32.78522 -31.14186 -29.74967 -29.46170 -28.99237 -25.89414 -25.41123 -23.80205 -23.14038 -22.16486 -21.90352 -20.87825 -19.32281 -18.58488 -18.37672 -17.41403 -17.25926 -16.66124 -16.62798 -15.62737 -15.43051 -14.95849 -14.91462 -14.75931 -14.40513 -14.20852 -14.15980 -14.04478 -14.00979 -13.53152 -13.06593 -12.48044 -12.29390 -12.18071 -12.09665 -12.01897 -11.89744 -11.56679 -11.26450 -11.11644 -11.04763 -10.91971 -10.72174 -10.69160 -10.36102 -10.08723 -9.80174 -9.28861 -9.18433 -8.62031 -8.46909 -7.86095 -7.17956 -6.91181 -4.44317 0.10225 0.76470 0.79744 1.14036 1.74450 1.96169 2.00456 2.35233 2.46013 2.89934 2.90990 2.96774 3.04614 3.60644 3.66221 3.87524 4.16942 4.35332 4.64696 4.68577 4.70575 4.81957 4.89540 5.10361 5.15362 5.22917 5.26165 5.40297 5.46621 5.56078 5.74250 5.77093 6.01512 6.10787 6.12037 6.21246 6.22317 6.26864 6.35727 6.57606 6.66891 6.75378 6.79251 6.91521 6.96606 7.21798 7.32533 7.51084 7.56466 8.51040 9.10991 10.23293 Molecular weight = 364.07amu Principal moments of inertia in cm(-1) A = 0.014515 B = 0.002561 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.631658 B =10930.337791 C =12722.267322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.044 3.956 3 Si 0.949 3.051 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.263 1.263 7 C -0.391 4.391 8 H 0.103 0.897 9 O -0.144 6.144 10 C 0.181 3.819 11 C -0.227 4.227 12 C -0.042 4.042 13 C -0.210 4.210 14 C -0.035 4.035 15 C -0.197 4.197 16 C 0.149 3.851 17 C -0.321 4.321 18 S 0.161 5.839 19 C 0.242 3.758 20 N -0.444 5.444 21 C 0.070 3.930 22 C -0.070 4.070 23 C -0.115 4.115 24 C -0.107 4.107 25 C -0.091 4.091 26 C 0.063 3.937 27 N -0.498 5.498 28 C 0.565 3.435 29 O -0.471 6.471 30 H 0.280 0.720 31 H 0.137 0.863 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.127 0.873 35 H 0.160 0.840 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.373 -13.123 0.558 13.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.165 4.165 3 Si 0.772 3.228 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.187 1.187 7 C -0.466 4.466 8 H 0.120 0.880 9 O -0.043 6.043 10 C 0.121 3.879 11 C -0.246 4.246 12 C -0.061 4.061 13 C -0.229 4.229 14 C -0.057 4.057 15 C -0.199 4.199 16 C 0.123 3.877 17 C -0.436 4.436 18 S 0.403 5.597 19 C -0.129 4.129 20 N -0.167 5.167 21 C -0.046 4.046 22 C -0.090 4.090 23 C -0.135 4.135 24 C -0.127 4.127 25 C -0.112 4.112 26 C -0.040 4.040 27 N -0.210 5.210 28 C 0.359 3.641 29 O -0.344 6.344 30 H 0.090 0.910 31 H 0.154 0.846 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.143 0.857 35 H 0.177 0.823 36 H 0.154 0.846 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.832 -13.339 0.956 13.399 hybrid contribution -1.330 1.820 -0.673 2.352 sum -2.162 -11.519 0.283 11.724 Atomic orbital electron populations 1.70007 1.06253 1.29081 1.41194 1.25494 0.95998 0.99450 0.95564 0.85572 0.79029 0.78971 0.79205 1.19350 1.19800 1.18717 1.21607 0.92389 0.80121 1.52440 0.87959 1.83836 1.35032 1.11819 1.73616 1.19361 0.90246 0.86476 0.91795 1.21202 0.93212 0.99619 1.10582 1.21062 0.99144 0.92049 0.93809 1.20578 0.93844 0.97489 1.11000 1.21089 0.94046 0.95418 0.95114 1.17845 0.90739 0.91536 1.19791 1.21935 0.93121 0.92928 0.79724 1.22689 0.93579 1.01363 1.26008 1.85368 0.96030 1.02696 1.75579 1.27721 0.97137 0.90303 0.97742 1.70529 1.06921 1.16725 1.22556 1.19089 0.90808 0.92923 1.01775 1.20317 0.90329 0.98079 1.00324 1.20994 0.95791 0.97063 0.99659 1.21017 0.98873 0.92891 0.99899 1.20289 0.89046 1.00925 1.00920 1.19166 0.87447 0.91862 1.05482 1.44923 1.09130 1.13448 1.53477 1.17923 0.89486 0.79361 0.77362 1.90854 1.55395 1.47343 1.40781 0.90980 0.84583 0.86427 0.86339 0.85682 0.82256 0.84553 0.84770 0.84763 0.84993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.78 13.67 55.48 0.76 -21.03 16 2 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 3 Si 0.95 17.93 29.55 -169.99 -5.02 12.90 16 4 H -0.27 -4.98 7.11 56.52 0.40 -4.57 16 5 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 6 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 7 C -0.39 -9.35 9.49 30.90 0.29 -9.05 16 8 H 0.10 2.20 5.20 -52.49 -0.27 1.92 16 9 O -0.14 -3.50 9.03 0.92 0.01 -3.49 16 10 C 0.18 3.69 6.67 -38.48 -0.26 3.43 16 11 C -0.23 -4.04 9.15 -39.45 -0.36 -4.40 16 12 C -0.04 -0.61 10.03 -39.49 -0.40 -1.01 16 13 C -0.21 -2.99 10.02 -39.62 -0.40 -3.39 16 14 C -0.04 -0.55 8.67 -39.10 -0.34 -0.89 16 15 C -0.20 -3.62 5.83 -104.92 -0.61 -4.24 16 16 C 0.15 2.78 9.48 -37.02 -0.35 2.43 16 17 C -0.32 -5.71 6.32 -37.31 -0.24 -5.94 16 18 S 0.16 2.47 18.85 -107.50 -2.03 0.44 16 19 C 0.24 4.15 8.96 -88.25 -0.79 3.36 16 20 N -0.44 -7.58 11.32 -10.71 -0.12 -7.71 16 21 C 0.07 1.11 7.21 -84.89 -0.61 0.49 16 22 C -0.07 -0.83 10.11 -39.17 -0.40 -1.22 16 23 C -0.12 -1.11 10.01 -39.60 -0.40 -1.51 16 24 C -0.11 -1.13 10.04 -39.46 -0.40 -1.52 16 25 C -0.09 -1.29 10.07 -39.56 -0.40 -1.69 16 26 C 0.06 1.05 7.15 -83.09 -0.59 0.46 16 27 N -0.50 -9.09 3.06 -61.26 -0.19 -9.28 16 28 C 0.57 10.91 7.90 -13.50 -0.11 10.81 16 29 O -0.47 -10.11 17.85 5.20 0.09 -10.02 16 30 H 0.28 6.71 8.31 -40.82 -0.34 6.37 16 31 H 0.14 2.36 5.64 -52.49 -0.30 2.06 16 32 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 33 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.13 1.79 4.35 -26.00 -0.11 1.68 16 35 H 0.16 3.20 7.78 -52.48 -0.41 2.79 16 36 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 37 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 38 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 39 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 356.90 15.07 5.38 5.38 Total: -1.00 -29.04 356.90 -10.33 -39.37 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -2.76 Total: 6.36 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -6.44 Total: -12.94 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.45 Total: -38.01 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.10 Total: -13.51 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.02 Total: 12.90 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -2.03 Total: 0.44 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.04 -10.33 -39.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147679506.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.555 kcal (2) G-P(sol) polarization free energy of solvation -29.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds