Wall clock time and date at job start Tue Mar 31 2020 06:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31527 * 1 3 3 Si 1.86795 * 119.99823 * 2 1 4 4 H 1.48501 * 109.47284 * 269.99436 * 3 2 1 5 5 H 1.48500 * 109.47331 * 29.99964 * 3 2 1 6 6 H 1.48506 * 109.47016 * 149.99889 * 3 2 1 7 7 C 1.38686 * 119.99757 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00110 * 180.02562 * 7 2 1 9 9 O 1.34775 * 120.00315 * 0.02562 * 7 2 1 10 10 C 1.35516 * 117.00192 * 179.71641 * 9 7 2 11 11 C 1.38745 * 120.17908 * 4.33941 * 10 9 7 12 12 C 1.38081 * 120.10143 * 180.25884 * 11 10 9 13 13 C 1.38638 * 120.47622 * 359.74624 * 12 11 10 14 14 C 1.37728 * 120.36319 * 359.97438 * 13 12 11 15 15 C 1.40013 * 119.88305 * 0.02562 * 14 13 12 16 16 C 1.46673 * 120.23351 * 179.97438 * 15 14 13 17 17 C 1.35890 * 120.00179 * 18.84317 * 16 15 14 18 18 S 1.77246 * 127.75398 * 6.70421 * 17 16 15 19 19 C 1.77226 * 94.70720 * 180.02562 * 18 17 16 20 20 N 1.31308 * 141.69124 * 180.02562 * 19 18 17 21 21 C 1.35682 * 109.57303 * 180.02562 * 20 19 18 22 22 C 1.39817 * 133.45750 * 180.36094 * 21 20 19 23 23 C 1.37743 * 119.64504 * 180.11898 * 22 21 20 24 24 C 1.38669 * 120.58374 * 359.45240 * 23 22 21 25 25 C 1.38142 * 120.37815 * 0.27246 * 24 23 22 26 26 C 1.38403 * 119.64782 * 0.02562 * 25 24 23 27 27 N 1.36610 * 107.55174 * 0.02562 * 19 18 17 28 28 C 1.33977 * 117.24568 * 359.97438 * 27 19 18 29 29 O 1.21691 * 121.99492 * 180.02562 * 28 27 19 30 30 H 0.97000 * 119.99934 * 0.02562 * 1 2 3 31 31 H 1.08000 * 119.95110 * 359.97438 * 11 10 9 32 32 H 1.08004 * 119.76050 * 179.76321 * 12 11 10 33 33 H 1.07998 * 119.81632 * 179.97438 * 13 12 11 34 34 H 1.08002 * 120.06164 * 179.97438 * 14 13 12 35 35 H 1.08005 * 120.00128 * 198.83707 * 16 15 14 36 36 H 1.08000 * 120.17649 * 359.83937 * 22 21 20 37 37 H 1.08004 * 119.70571 * 179.72202 * 23 22 21 38 38 H 1.07996 * 119.80723 * 180.29592 * 24 23 22 39 39 H 1.07995 * 120.17480 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0086 -1.2011 0.0005 8 1 3.0886 -1.2011 0.0010 9 8 1.3348 -2.3683 0.0005 10 6 2.0728 -3.5048 -0.0049 11 6 3.4561 -3.4386 0.0806 12 6 4.2068 -4.5975 0.0696 13 6 3.5885 -5.8350 -0.0215 14 6 2.2164 -5.9235 -0.1015 15 6 1.4404 -4.7581 -0.0916 16 6 -0.0213 -4.8434 -0.1770 17 6 -0.6521 -6.0110 0.1156 18 16 0.0611 -7.4947 0.7725 19 6 -1.4676 -8.3911 0.7997 20 7 -1.9699 -9.5619 1.1175 21 6 -3.3034 -9.5676 0.8669 22 6 -4.3071 -10.5284 1.0226 23 6 -5.6022 -10.2248 0.6653 24 6 -5.9205 -8.9718 0.1636 25 6 -4.9398 -8.0111 0.0100 26 6 -3.6331 -8.3047 0.3593 27 7 -2.4411 -7.5599 0.3227 28 6 -2.0693 -6.3254 -0.0416 29 8 -2.8652 -5.5145 -0.4773 30 1 -0.4850 0.8401 -0.0004 31 1 3.9466 -2.4791 0.1513 32 1 5.2835 -4.5393 0.1325 33 1 4.1861 -6.7345 -0.0296 34 1 1.7399 -6.8901 -0.1727 35 1 -0.5964 -3.9783 -0.4723 36 1 -4.0673 -11.5050 1.4166 37 1 -6.3775 -10.9678 0.7809 38 1 -6.9409 -8.7456 -0.1081 39 1 -5.1913 -7.0362 -0.3806 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000147679506.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:36 Heat of formation + Delta-G solvation = 66.870407 kcal Electronic energy + Delta-G solvation = -27952.991041 eV Core-core repulsion = 23919.038727 eV Total energy + Delta-G solvation = -4033.952314 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 364.067 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.98423 -41.15692 -40.67488 -38.56049 -38.44081 -35.70374 -35.01655 -34.45073 -32.26553 -31.02678 -30.69158 -30.31725 -27.54369 -26.76915 -25.05239 -24.44479 -23.37751 -23.21322 -22.17909 -20.71629 -20.04641 -19.81654 -18.77396 -18.59115 -18.03731 -17.84902 -17.07562 -16.82392 -16.35043 -16.16728 -15.93810 -15.88636 -15.67435 -15.49118 -15.43910 -15.11003 -14.83130 -14.55164 -13.90458 -13.66567 -13.49834 -13.26615 -13.19524 -13.03765 -12.88964 -12.71479 -12.48348 -12.34530 -12.23898 -12.14124 -12.08418 -11.72090 -11.47825 -11.28532 -10.91779 -10.39974 -9.77899 -9.69078 -9.25149 -8.60442 -8.50103 -6.24853 -1.29848 -0.53004 -0.41814 0.04220 0.34384 0.60489 0.70520 1.00189 1.16764 1.35489 1.44641 1.52879 1.59635 2.09315 2.56098 2.63767 2.72916 3.06542 3.09860 3.17807 3.62244 3.66020 3.72107 3.89236 3.91615 4.13519 4.14981 4.20950 4.25408 4.41784 4.55258 4.57564 4.68096 4.82822 4.85647 5.00367 5.06993 5.11440 5.20738 5.33023 5.42874 5.47135 5.50561 5.60756 5.64988 5.82783 5.85663 6.01866 6.23659 6.83307 7.53693 8.60184 Molecular weight = 364.07amu Principal moments of inertia in cm(-1) A = 0.014515 B = 0.002561 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.631658 B =10930.337791 C =12722.267322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.016 4.016 3 Si 1.019 2.981 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.245 1.245 7 C -0.413 4.413 8 H 0.118 0.882 9 O -0.202 6.202 10 C 0.158 3.842 11 C -0.243 4.243 12 C -0.025 4.025 13 C -0.183 4.183 14 C -0.041 4.041 15 C -0.200 4.200 16 C 0.141 3.859 17 C -0.319 4.319 18 S 0.221 5.779 19 C 0.213 3.787 20 N -0.443 5.443 21 C 0.042 3.958 22 C -0.064 4.064 23 C -0.097 4.097 24 C -0.082 4.082 25 C -0.121 4.121 26 C 0.027 3.973 27 N -0.508 5.508 28 C 0.560 3.440 29 O -0.507 6.507 30 H 0.276 0.724 31 H 0.136 0.864 32 H 0.164 0.836 33 H 0.166 0.834 34 H 0.143 0.857 35 H 0.130 0.870 36 H 0.165 0.835 37 H 0.185 0.815 38 H 0.173 0.827 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.124 -17.706 1.168 17.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.216 4.216 3 Si 0.838 3.162 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.168 1.168 7 C -0.488 4.488 8 H 0.135 0.865 9 O -0.104 6.104 10 C 0.103 3.897 11 C -0.262 4.262 12 C -0.044 4.044 13 C -0.202 4.202 14 C -0.063 4.063 15 C -0.202 4.202 16 C 0.114 3.886 17 C -0.434 4.434 18 S 0.463 5.537 19 C -0.157 4.157 20 N -0.166 5.166 21 C -0.074 4.074 22 C -0.084 4.084 23 C -0.116 4.116 24 C -0.102 4.102 25 C -0.142 4.142 26 C -0.073 4.073 27 N -0.220 5.220 28 C 0.354 3.646 29 O -0.383 6.383 30 H 0.086 0.914 31 H 0.154 0.846 32 H 0.181 0.819 33 H 0.184 0.816 34 H 0.159 0.841 35 H 0.148 0.852 36 H 0.183 0.817 37 H 0.203 0.797 38 H 0.190 0.810 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.441 -18.041 1.580 18.116 hybrid contribution -1.859 2.546 -0.850 3.264 sum -1.418 -15.496 0.731 15.578 Atomic orbital electron populations 1.70165 1.08280 1.29456 1.46264 1.26668 0.96716 1.03021 0.95177 0.84563 0.78103 0.74179 0.79350 1.18806 1.20146 1.16785 1.22042 0.93163 0.80565 1.52997 0.86472 1.83849 1.36253 1.12708 1.77633 1.19961 0.91768 0.86358 0.91591 1.21407 0.92188 1.01279 1.11324 1.21583 1.01242 0.90754 0.90771 1.21197 0.93212 0.99120 1.06660 1.21344 0.94984 0.94826 0.95101 1.18112 0.90526 0.92173 1.19423 1.21757 0.93752 0.92510 0.80620 1.22820 0.93523 1.02538 1.24532 1.84888 0.94391 0.99544 1.74868 1.28042 0.97725 0.90663 0.99291 1.70466 1.07935 1.16386 1.21794 1.19606 0.90906 0.93609 1.03234 1.20860 0.90181 0.98293 0.99094 1.21592 0.95964 0.97295 0.96742 1.21562 0.99563 0.92168 0.96862 1.20501 0.89222 1.01740 1.02736 1.19718 0.87920 0.92467 1.07207 1.44921 1.10386 1.13013 1.53711 1.18232 0.89847 0.79689 0.76801 1.90820 1.56372 1.48537 1.42526 0.91445 0.84619 0.81884 0.81619 0.84097 0.85228 0.81724 0.79734 0.80987 0.86459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.16 13.67 21.62 0.30 -51.86 16 2 C -0.02 -0.81 5.49 84.85 0.47 -0.34 16 3 Si 1.02 38.90 29.55 68.60 2.03 40.92 16 4 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 5 H -0.28 -10.47 7.11 99.48 0.71 -9.76 16 6 H -0.24 -8.41 7.11 99.48 0.71 -7.70 16 7 C -0.41 -21.22 9.49 67.93 0.64 -20.57 16 8 H 0.12 5.29 5.20 -2.91 -0.02 5.28 16 9 O -0.20 -10.68 9.03 -19.61 -0.18 -10.86 16 10 C 0.16 6.77 6.67 22.98 0.15 6.92 16 11 C -0.24 -8.50 9.15 22.35 0.20 -8.29 16 12 C -0.03 -0.64 10.03 22.33 0.22 -0.42 16 13 C -0.18 -4.35 10.02 22.24 0.22 -4.12 16 14 C -0.04 -1.20 8.67 22.58 0.20 -1.01 16 15 C -0.20 -7.59 5.83 -20.06 -0.12 -7.70 16 16 C 0.14 5.69 9.48 23.93 0.23 5.91 16 17 C -0.32 -11.94 6.32 23.74 0.15 -11.79 16 18 S 0.22 6.62 18.85 -56.49 -1.07 5.55 16 19 C 0.21 7.31 8.96 179.52 1.61 8.92 16 20 N -0.44 -14.73 11.32 -187.80 -2.13 -16.86 16 21 C 0.04 1.26 7.21 39.37 0.28 1.54 16 22 C -0.06 -1.28 10.11 22.53 0.23 -1.05 16 23 C -0.10 -1.38 10.01 22.26 0.22 -1.15 16 24 C -0.08 -1.46 10.04 22.35 0.22 -1.23 16 25 C -0.12 -3.42 10.07 22.29 0.22 -3.20 16 26 C 0.03 0.93 7.15 38.21 0.27 1.21 16 27 N -0.51 -19.22 3.06 -466.39 -1.43 -20.64 16 28 C 0.56 23.12 7.90 86.38 0.68 23.80 16 29 O -0.51 -23.79 17.85 -4.32 -0.08 -23.87 16 30 H 0.28 14.71 8.31 -92.71 -0.77 13.94 16 31 H 0.14 4.70 5.64 -2.91 -0.02 4.69 16 32 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 33 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 34 H 0.14 3.66 4.35 -19.75 -0.09 3.57 16 35 H 0.13 5.99 7.78 -2.91 -0.02 5.97 16 36 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 37 H 0.19 0.90 8.06 -2.91 -0.02 0.88 16 38 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 39 H 0.12 3.56 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -74.07 356.90 4.64 -69.43 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 1.07 Total: 20.76 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: 6.12 Total: -12.57 kcal Atomic # 7 Polarization: -86.11 SS G_CDS: -3.26 Total: -89.36 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -0.25 Total: -34.73 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.92 kcal Atomic # 16 Polarization: 6.62 SS G_CDS: -1.07 Total: 5.55 kcal Total: -74.07 4.64 -69.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147679506.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.305 kcal (2) G-P(sol) polarization free energy of solvation -74.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds